mRNA_H-elongata_contig109605.777.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109605.777.1
Unique NamemRNA_H-elongata_contig109605.777.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig109605.777.1 vs. uniprot
Match: D8LEK1_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK1_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 3.000e-16
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:   43 DRSKLSRALLWVVIMSPARPTTEINALCNSPKYHSRVVYYRGNVTNPRDMDAVCAE 210
            D    S   +WVV+M+PA P+ EI+ALC  PKY SRV+Y+RG+VTNPRDM AVCAE
Sbjct:  219 DDQTASNVSVWVVVMAPASPSEEISALCRQPKYRSRVIYFRGSVTNPRDMAAVCAE 274
[Close]
BLAST of mRNA_H-elongata_contig109605.777.1 vs. uniprot
Match: A0A6H5JQ48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ48_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 8.990e-16
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:   43 DRSKLSRALLWVVIMSPARPTTEINALCNSPKYHSRVVYYRGNVTNPRDMDAVCAE 210
            D  K     +WV+IM+PA P+ EI ALC  PKY SRV+Y+RG+VTNPRDM AVCAE
Sbjct:  321 DDQKSINVSVWVIIMAPASPSEEITALCRQPKYRSRVIYFRGSVTNPRDMAAVCAE 376
[Close]
BLAST of mRNA_H-elongata_contig109605.777.1 vs. uniprot
Match: A0A6H5K4I5_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4I5_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 6.060e-10
Identity = 27/47 (57.45%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:   70 LWVVIMSPARPTTEINALCNSPKYHSRVVYYRGNVTNPRDMDAVCAE 210
            LWVVIMSP+ P+ E+ ++  SP + SRV+Y+RG+V +P DM+AVCAE
Sbjct:  325 LWVVIMSPSSPSPEVLSVIRSPLFMSRVIYFRGSVMDPLDMNAVCAE 371
[Close]
BLAST of mRNA_H-elongata_contig109605.777.1 vs. uniprot
Match: D7FXB0_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXB0_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 6.980e-10
Identity = 27/47 (57.45%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:   70 LWVVIMSPARPTTEINALCNSPKYHSRVVYYRGNVTNPRDMDAVCAE 210
            LWVVIMSP+ P+ E+ ++  SP + SRV+Y+RG+V +P DM+AVCAE
Sbjct:  284 LWVVIMSPSPPSPEVLSVIRSPLFMSRVIYFRGSVMDPLDMNAVCAE 330
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109605.777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LEK1_ECTSI3.000e-1662.50Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JQ48_9PHAE8.990e-1662.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4I5_9PHAE6.060e-1057.45Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FXB0_ECTSI6.980e-1057.45Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109605contigH-elongata_contig109605:461..673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue5.8e-08
Seed eggNOG ortholog2880.D7FXB0
KEGG koko:K04936
KEGG TC1.A.1.3.1,1.A.1.3.2,1.A.1.3.3
KEGG Pathwayko04022,ko04270,ko04911,ko04924,ko04970,ko04972,map04022,map04270,map04911,map04924,map04970,map04972
EggNOG free text desc.large conductance calcium-activated potassium channel activity
EggNOG OGsKOG1420@1,KOG1420@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929623.0152152-CDS-H-elongata_contig109605:460..6731622929623.0152152-CDS-H-elongata_contig109605:460..673Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109605 461..673 -
1691679095.4166765-CDS-H-elongata_contig109605:460..6731691679095.4166765-CDS-H-elongata_contig109605:460..673Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109605 461..673 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109605.777.1prot_H-elongata_contig109605.777.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109605 461..673 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109605.777.1

>prot_H-elongata_contig109605.777.1 ID=prot_H-elongata_contig109605.777.1|Name=mRNA_H-elongata_contig109605.777.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
FSERRTELVYYMRQDRSKLSRALLWVVIMSPARPTTEINALCNSPKYHSR
VVYYRGNVTNPRDMDAVCAE*
back to top

mRNA from alignment at H-elongata_contig109605:461..673-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109605.777.1 ID=mRNA_H-elongata_contig109605.777.1|Name=mRNA_H-elongata_contig109605.777.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig109605:461..673- (Himanthalia elongata Himel1 dioecious)
TTTTCGGAACGTCGAACTGAACTTGTATATTACATGAGACAGGATCGATC
AAAATTGAGCAGGGCGCTGCTGTGGGTGGTGATCATGTCTCCAGCCCGCC
CCACCACAGAGATAAACGCCCTGTGCAACTCGCCAAAGTACCACTCAAGG
GTGGTCTACTACAGGGGGAACGTCACCAACCCGAGGGACATGGACGCCGT
GTGCGCAGAGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig109605:461..673-

>mRNA_H-elongata_contig109605.777.1 ID=mRNA_H-elongata_contig109605.777.1|Name=mRNA_H-elongata_contig109605.777.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig109605:461..673- (Himanthalia elongata Himel1 dioecious)
TTTTCGGAACGTCGAACTGAACTTGTATATTACATGAGACAGGATCGATC
AAAATTGAGCAGGGCGCTGCTGTGGGTGGTGATCATGTCTCCAGCCCGCC
CCACCACAGAGATAAACGCCCTGTGCAACTCGCCAAAGTACCACTCAAGG
GTGGTCTACTACAGGGGGAACGTCACCAACCCGAGGGACATGGACGCCGT
GTGCGCAGAGTGATTTTCGGAACGTCGAACTGAACTTGTATATTACATGA
GACAGGATCGATCAAAATTGAGCAGGGCGCTGCTGTGGGTGGTGATCATG
TCTCCAGCCCGCCCCACCACAGAGATAAACGCCCTGTGCAACTCGCCAAA
GTACCACTCAAGGGTGGTCTACTACAGGGGGAACGTCACCAACCCGAGGG
ACATGGACGCCGTGTGCGCAGAGTGA
back to top