mRNA_H-elongata_contig109475.769.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig109475.769.1 vs. uniprot
Match: D8LMN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMN4_ECTSI) HSP 1 Score: 149 bits (375), Expect = 1.640e-43 Identity = 66/89 (74.16%), Postives = 78/89 (87.64%), Query Frame = 1
Query: 1 YDVGDPVYFVDDTGVESWYIVTRINLLTTMFRRWDGQATILPNSVMATKTIRNQWRSGPLLHNTMLAVSLDTPMEKLDHVKEGVAKGMR 267
YDVGDPVYFVDDTG E WYIVTRIN+LTT+FRRWDGQAT++ N++MA K IRNQWRS LH+TM+AVS+DTPMEKLD +K G+A G+R
Sbjct: 13 YDVGDPVYFVDDTGGEDWYIVTRINMLTTVFRRWDGQATLIANNIMAKKAIRNQWRSSRYLHHTMIAVSVDTPMEKLDQMKSGIAAGLR 101
BLAST of mRNA_H-elongata_contig109475.769.1 vs. uniprot
Match: A0A6H5JSR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR3_9PHAE) HSP 1 Score: 149 bits (375), Expect = 1.130e-39 Identity = 66/89 (74.16%), Postives = 78/89 (87.64%), Query Frame = 1
Query: 1 YDVGDPVYFVDDTGVESWYIVTRINLLTTMFRRWDGQATILPNSVMATKTIRNQWRSGPLLHNTMLAVSLDTPMEKLDHVKEGVAKGMR 267
YDVGDPVYFVDDTG E WYIVTRIN+LTT+FRRWDGQAT++ N++MA K IRNQWRS LH+TM+AVS+DTPMEKLD +K G+A G+R
Sbjct: 839 YDVGDPVYFVDDTGGEDWYIVTRINMLTTVFRRWDGQATLIANNIMAKKAIRNQWRSSRYLHHTMIAVSVDTPMEKLDQMKNGIAAGLR 927
BLAST of mRNA_H-elongata_contig109475.769.1 vs. uniprot
Match: A0A835YNU8_9STRA (Mechanosensitive ion channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNU8_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 5.460e-17 Identity = 43/82 (52.44%), Postives = 54/82 (65.85%), Query Frame = 1
Query: 1 YDVGDPVYFVDDTGVESWYIVTRINLLTTMFRRWDGQATILPNSVMATKTIRNQWRSGPLLHNTMLAVSLDTPMEKLDHVKE 246
YDVGD VY D+ E+ Y+V RIN+LTT+FRRWD TILPN +A + IRN RSG + L VS+ TP KL+ +KE
Sbjct: 968 YDVGDRVYIKDELNDEANYVVQRINMLTTVFRRWDDHYTILPNQQLAKREIRNMRRSGDGVMLMTLLVSIATPRAKLEALKE 1049
BLAST of mRNA_H-elongata_contig109475.769.1 vs. uniprot
Match: A0A835YTT2_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTT2_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 9.370e-14 Identity = 36/89 (40.45%), Postives = 53/89 (59.55%), Query Frame = 1
Query: 1 YDVGDPVYFVDDTGVESWYIVTRINLLTTMFRRWDGQATILPNSVMATKTIRNQWRSGPLLHNTMLAVSLDTPMEKLDHVKEGVAKGMR 267
+DVGD V+F DD G ++ ++V RINLL+T+ +RWDGQ + PN +A + IRN RSGP + + V D E L ++ + R
Sbjct: 494 FDVGDGVHFRDDMGQDNVFVVHRINLLSTVLKRWDGQYVVWPNRFLALREIRNMRRSGPQSNTLTVFVRRDASAEALARYRDALRAAAR 582
BLAST of mRNA_H-elongata_contig109475.769.1 vs. uniprot
Match: A0A5B7BL62_DAVIN (Mechanosensitive ion channel protein n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BL62_DAVIN) HSP 1 Score: 65.5 bits (158), Expect = 2.270e-10 Identity = 36/94 (38.30%), Postives = 56/94 (59.57%), Query Frame = 1
Query: 1 YDVGDPVYFVDDTGVESWYIVTRINLLTTMFRRWDGQATILPNSVMATKTIRNQWRSGPLLHNTMLAVSLDTPMEKLDHVKEGVAKGMRVRKPH 282
YDVGD + GV+ IV +N+LTT+F+R+D Q I PNS++ATK I N +RS + ++ + TPMEK+ +K+ + + + R H
Sbjct: 541 YDVGDRC---EVDGVQM--IVEEMNILTTVFQRYDNQIIIYPNSILATKPIGNYFRSPDMADTVDFSIHISTPMEKIAIMKKRIIRYIESRSDH 629
BLAST of mRNA_H-elongata_contig109475.769.1 vs. uniprot
Match: A0A2P6PZF5_ROSCH (Mechanosensitive ion channel protein n=2 Tax=Rosoideae TaxID=171638 RepID=A0A2P6PZF5_ROSCH) HSP 1 Score: 65.1 bits (157), Expect = 3.100e-10 Identity = 39/94 (41.49%), Postives = 54/94 (57.45%), Query Frame = 1
Query: 1 YDVGDPVYFVDDTGVESWYIVTRINLLTTMFRRWDGQATILPNSVMATKTIRNQWRSGPLLHNTMLAVSLDTPMEKLDHVKEGVAKGMRVRKPH 282
YDVGD + GV+ +V +NLLTT+F ++D Q I PNSV+ATK I N +RS + V + TP+EKL+ VKE + + R H
Sbjct: 565 YDVGDRC---EVDGVQ--LVVEEMNLLTTVFLKFDNQKVIYPNSVLATKPIANYYRSPDMGDAVDFCVHISTPLEKLNIVKERIIGYIETRTDH 653
BLAST of mRNA_H-elongata_contig109475.769.1 vs. uniprot
Match: A0A6N2BDQ6_SOLCI (Mechanosensitive ion channel protein n=6 Tax=Solanum TaxID=4107 RepID=A0A6N2BDQ6_SOLCI) HSP 1 Score: 65.1 bits (157), Expect = 3.100e-10 Identity = 36/94 (38.30%), Postives = 57/94 (60.64%), Query Frame = 1
Query: 1 YDVGDPVYFVDDTGVESWYIVTRINLLTTMFRRWDGQATILPNSVMATKTIRNQWRSGPLLHNTMLAVSLDTPMEKLDHVKEGVAKGMRVRKPH 282
+DVGD V + GV+ +V +N+LTT+F R+D Q I PNSV++TK I N +RS + + ++ + TPMEK+ +KE + + + R H
Sbjct: 580 FDVGDRV---EVDGVQM--VVEEMNILTTVFLRYDNQKIIYPNSVVSTKPISNYYRSPDMGDSVDFSIHISTPMEKIAMMKEKITRYIENRSDH 668
BLAST of mRNA_H-elongata_contig109475.769.1 vs. uniprot
Match: A0A1J6J755_NICAT (Mechanosensitive ion channel protein n=6 Tax=Nicotiana TaxID=4085 RepID=A0A1J6J755_NICAT) HSP 1 Score: 65.1 bits (157), Expect = 3.100e-10 Identity = 36/94 (38.30%), Postives = 56/94 (59.57%), Query Frame = 1
Query: 1 YDVGDPVYFVDDTGVESWYIVTRINLLTTMFRRWDGQATILPNSVMATKTIRNQWRSGPLLHNTMLAVSLDTPMEKLDHVKEGVAKGMRVRKPH 282
+DVGD V + GV+ +V +N+LTT+F R+D Q I PNSV++TK I N +RS + + + + TPMEK+ +KE + + + R H
Sbjct: 585 FDVGDRV---EVDGVQ--LVVEEMNILTTVFLRYDNQKIIYPNSVLSTKPISNYYRSPDMGDSVDFCIHISTPMEKIAMMKERITRYIENRSDH 673
BLAST of mRNA_H-elongata_contig109475.769.1 vs. uniprot
Match: A0A2G3DGR6_CAPCH (Mechanosensitive ion channel protein 6 n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3DGR6_CAPCH) HSP 1 Score: 62.8 bits (151), Expect = 3.400e-10 Identity = 31/75 (41.33%), Postives = 46/75 (61.33%), Query Frame = 1
Query: 58 IVTRINLLTTMFRRWDGQATILPNSVMATKTIRNQWRSGPLLHNTMLAVSLDTPMEKLDHVKEGVAKGMRVRKPH 282
IV IN+LTT+F R+D Q I PNSV++TK I N +RS + + + + TPMEK+ +KE + + + R H
Sbjct: 7 IVEEINILTTVFLRFDNQKIIYPNSVLSTKPISNYYRSPHMGDSVDFCIHISTPMEKISMMKERITRYIENRSDH 81
BLAST of mRNA_H-elongata_contig109475.769.1 vs. uniprot
Match: A0A4S4D1J7_CAMSI (Mechanosensitive ion channel protein n=2 Tax=Camellia sinensis TaxID=4442 RepID=A0A4S4D1J7_CAMSI) HSP 1 Score: 64.7 bits (156), Expect = 4.240e-10 Identity = 35/94 (37.23%), Postives = 56/94 (59.57%), Query Frame = 1
Query: 1 YDVGDPVYFVDDTGVESWYIVTRINLLTTMFRRWDGQATILPNSVMATKTIRNQWRSGPLLHNTMLAVSLDTPMEKLDHVKEGVAKGMRVRKPH 282
+DVGD + GV+ +V +N+LTT+F R+D Q I PNSV+ATK I N +RS +L + ++ + TPMEK+ +++ + + R H
Sbjct: 519 FDVGDRC---EVDGVQM--VVEEMNILTTVFLRYDNQMIIYPNSVLATKPISNYFRSPDMLDSVEFSIHISTPMEKIASMRKSIISYIDERSDH 607 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109475.769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig109475.769.1 >prot_H-elongata_contig109475.769.1 ID=prot_H-elongata_contig109475.769.1|Name=mRNA_H-elongata_contig109475.769.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp YDVGDPVYFVDDTGVESWYIVTRINLLTTMFRRWDGQATILPNSVMATKTback to top mRNA from alignment at H-elongata_contig109475:313..926- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig109475.769.1 ID=mRNA_H-elongata_contig109475.769.1|Name=mRNA_H-elongata_contig109475.769.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=614bp|location=Sequence derived from alignment at H-elongata_contig109475:313..926- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig109475:313..926- >mRNA_H-elongata_contig109475.769.1 ID=mRNA_H-elongata_contig109475.769.1|Name=mRNA_H-elongata_contig109475.769.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig109475:313..926- (Himanthalia elongata Himel1 dioecious)back to top |