mRNA_H-elongata_contig109475.769.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109475.769.1
Unique NamemRNA_H-elongata_contig109475.769.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig109475.769.1 vs. uniprot
Match: D8LMN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMN4_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 1.640e-43
Identity = 66/89 (74.16%), Postives = 78/89 (87.64%), Query Frame = 1
Query:    1 YDVGDPVYFVDDTGVESWYIVTRINLLTTMFRRWDGQATILPNSVMATKTIRNQWRSGPLLHNTMLAVSLDTPMEKLDHVKEGVAKGMR 267
            YDVGDPVYFVDDTG E WYIVTRIN+LTT+FRRWDGQAT++ N++MA K IRNQWRS   LH+TM+AVS+DTPMEKLD +K G+A G+R
Sbjct:   13 YDVGDPVYFVDDTGGEDWYIVTRINMLTTVFRRWDGQATLIANNIMAKKAIRNQWRSSRYLHHTMIAVSVDTPMEKLDQMKSGIAAGLR 101          
BLAST of mRNA_H-elongata_contig109475.769.1 vs. uniprot
Match: A0A6H5JSR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR3_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 1.130e-39
Identity = 66/89 (74.16%), Postives = 78/89 (87.64%), Query Frame = 1
Query:    1 YDVGDPVYFVDDTGVESWYIVTRINLLTTMFRRWDGQATILPNSVMATKTIRNQWRSGPLLHNTMLAVSLDTPMEKLDHVKEGVAKGMR 267
            YDVGDPVYFVDDTG E WYIVTRIN+LTT+FRRWDGQAT++ N++MA K IRNQWRS   LH+TM+AVS+DTPMEKLD +K G+A G+R
Sbjct:  839 YDVGDPVYFVDDTGGEDWYIVTRINMLTTVFRRWDGQATLIANNIMAKKAIRNQWRSSRYLHHTMIAVSVDTPMEKLDQMKNGIAAGLR 927          
BLAST of mRNA_H-elongata_contig109475.769.1 vs. uniprot
Match: A0A835YNU8_9STRA (Mechanosensitive ion channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNU8_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 5.460e-17
Identity = 43/82 (52.44%), Postives = 54/82 (65.85%), Query Frame = 1
Query:    1 YDVGDPVYFVDDTGVESWYIVTRINLLTTMFRRWDGQATILPNSVMATKTIRNQWRSGPLLHNTMLAVSLDTPMEKLDHVKE 246
            YDVGD VY  D+   E+ Y+V RIN+LTT+FRRWD   TILPN  +A + IRN  RSG  +    L VS+ TP  KL+ +KE
Sbjct:  968 YDVGDRVYIKDELNDEANYVVQRINMLTTVFRRWDDHYTILPNQQLAKREIRNMRRSGDGVMLMTLLVSIATPRAKLEALKE 1049          
BLAST of mRNA_H-elongata_contig109475.769.1 vs. uniprot
Match: A0A835YTT2_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTT2_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 9.370e-14
Identity = 36/89 (40.45%), Postives = 53/89 (59.55%), Query Frame = 1
Query:    1 YDVGDPVYFVDDTGVESWYIVTRINLLTTMFRRWDGQATILPNSVMATKTIRNQWRSGPLLHNTMLAVSLDTPMEKLDHVKEGVAKGMR 267
            +DVGD V+F DD G ++ ++V RINLL+T+ +RWDGQ  + PN  +A + IRN  RSGP  +   + V  D   E L   ++ +    R
Sbjct:  494 FDVGDGVHFRDDMGQDNVFVVHRINLLSTVLKRWDGQYVVWPNRFLALREIRNMRRSGPQSNTLTVFVRRDASAEALARYRDALRAAAR 582          
BLAST of mRNA_H-elongata_contig109475.769.1 vs. uniprot
Match: A0A5B7BL62_DAVIN (Mechanosensitive ion channel protein n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BL62_DAVIN)

HSP 1 Score: 65.5 bits (158), Expect = 2.270e-10
Identity = 36/94 (38.30%), Postives = 56/94 (59.57%), Query Frame = 1
Query:    1 YDVGDPVYFVDDTGVESWYIVTRINLLTTMFRRWDGQATILPNSVMATKTIRNQWRSGPLLHNTMLAVSLDTPMEKLDHVKEGVAKGMRVRKPH 282
            YDVGD     +  GV+   IV  +N+LTT+F+R+D Q  I PNS++ATK I N +RS  +      ++ + TPMEK+  +K+ + + +  R  H
Sbjct:  541 YDVGDRC---EVDGVQM--IVEEMNILTTVFQRYDNQIIIYPNSILATKPIGNYFRSPDMADTVDFSIHISTPMEKIAIMKKRIIRYIESRSDH 629          
BLAST of mRNA_H-elongata_contig109475.769.1 vs. uniprot
Match: A0A2P6PZF5_ROSCH (Mechanosensitive ion channel protein n=2 Tax=Rosoideae TaxID=171638 RepID=A0A2P6PZF5_ROSCH)

HSP 1 Score: 65.1 bits (157), Expect = 3.100e-10
Identity = 39/94 (41.49%), Postives = 54/94 (57.45%), Query Frame = 1
Query:    1 YDVGDPVYFVDDTGVESWYIVTRINLLTTMFRRWDGQATILPNSVMATKTIRNQWRSGPLLHNTMLAVSLDTPMEKLDHVKEGVAKGMRVRKPH 282
            YDVGD     +  GV+   +V  +NLLTT+F ++D Q  I PNSV+ATK I N +RS  +       V + TP+EKL+ VKE +   +  R  H
Sbjct:  565 YDVGDRC---EVDGVQ--LVVEEMNLLTTVFLKFDNQKVIYPNSVLATKPIANYYRSPDMGDAVDFCVHISTPLEKLNIVKERIIGYIETRTDH 653          
BLAST of mRNA_H-elongata_contig109475.769.1 vs. uniprot
Match: A0A6N2BDQ6_SOLCI (Mechanosensitive ion channel protein n=6 Tax=Solanum TaxID=4107 RepID=A0A6N2BDQ6_SOLCI)

HSP 1 Score: 65.1 bits (157), Expect = 3.100e-10
Identity = 36/94 (38.30%), Postives = 57/94 (60.64%), Query Frame = 1
Query:    1 YDVGDPVYFVDDTGVESWYIVTRINLLTTMFRRWDGQATILPNSVMATKTIRNQWRSGPLLHNTMLAVSLDTPMEKLDHVKEGVAKGMRVRKPH 282
            +DVGD V   +  GV+   +V  +N+LTT+F R+D Q  I PNSV++TK I N +RS  +  +   ++ + TPMEK+  +KE + + +  R  H
Sbjct:  580 FDVGDRV---EVDGVQM--VVEEMNILTTVFLRYDNQKIIYPNSVVSTKPISNYYRSPDMGDSVDFSIHISTPMEKIAMMKEKITRYIENRSDH 668          
BLAST of mRNA_H-elongata_contig109475.769.1 vs. uniprot
Match: A0A1J6J755_NICAT (Mechanosensitive ion channel protein n=6 Tax=Nicotiana TaxID=4085 RepID=A0A1J6J755_NICAT)

HSP 1 Score: 65.1 bits (157), Expect = 3.100e-10
Identity = 36/94 (38.30%), Postives = 56/94 (59.57%), Query Frame = 1
Query:    1 YDVGDPVYFVDDTGVESWYIVTRINLLTTMFRRWDGQATILPNSVMATKTIRNQWRSGPLLHNTMLAVSLDTPMEKLDHVKEGVAKGMRVRKPH 282
            +DVGD V   +  GV+   +V  +N+LTT+F R+D Q  I PNSV++TK I N +RS  +  +    + + TPMEK+  +KE + + +  R  H
Sbjct:  585 FDVGDRV---EVDGVQ--LVVEEMNILTTVFLRYDNQKIIYPNSVLSTKPISNYYRSPDMGDSVDFCIHISTPMEKIAMMKERITRYIENRSDH 673          
BLAST of mRNA_H-elongata_contig109475.769.1 vs. uniprot
Match: A0A2G3DGR6_CAPCH (Mechanosensitive ion channel protein 6 n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3DGR6_CAPCH)

HSP 1 Score: 62.8 bits (151), Expect = 3.400e-10
Identity = 31/75 (41.33%), Postives = 46/75 (61.33%), Query Frame = 1
Query:   58 IVTRINLLTTMFRRWDGQATILPNSVMATKTIRNQWRSGPLLHNTMLAVSLDTPMEKLDHVKEGVAKGMRVRKPH 282
            IV  IN+LTT+F R+D Q  I PNSV++TK I N +RS  +  +    + + TPMEK+  +KE + + +  R  H
Sbjct:    7 IVEEINILTTVFLRFDNQKIIYPNSVLSTKPISNYYRSPHMGDSVDFCIHISTPMEKISMMKERITRYIENRSDH 81          
BLAST of mRNA_H-elongata_contig109475.769.1 vs. uniprot
Match: A0A4S4D1J7_CAMSI (Mechanosensitive ion channel protein n=2 Tax=Camellia sinensis TaxID=4442 RepID=A0A4S4D1J7_CAMSI)

HSP 1 Score: 64.7 bits (156), Expect = 4.240e-10
Identity = 35/94 (37.23%), Postives = 56/94 (59.57%), Query Frame = 1
Query:    1 YDVGDPVYFVDDTGVESWYIVTRINLLTTMFRRWDGQATILPNSVMATKTIRNQWRSGPLLHNTMLAVSLDTPMEKLDHVKEGVAKGMRVRKPH 282
            +DVGD     +  GV+   +V  +N+LTT+F R+D Q  I PNSV+ATK I N +RS  +L +   ++ + TPMEK+  +++ +   +  R  H
Sbjct:  519 FDVGDRC---EVDGVQM--VVEEMNILTTVFLRYDNQMIIYPNSVLATKPISNYFRSPDMLDSVEFSIHISTPMEKIASMRKSIISYIDERSDH 607          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109475.769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMN4_ECTSI1.640e-4374.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSR3_9PHAE1.130e-3974.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YNU8_9STRA5.460e-1752.44Mechanosensitive ion channel-domain-containing pro... [more]
A0A835YTT2_9STRA9.370e-1440.45EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
A0A5B7BL62_DAVIN2.270e-1038.30Mechanosensitive ion channel protein n=1 Tax=David... [more]
A0A2P6PZF5_ROSCH3.100e-1041.49Mechanosensitive ion channel protein n=2 Tax=Rosoi... [more]
A0A6N2BDQ6_SOLCI3.100e-1038.30Mechanosensitive ion channel protein n=6 Tax=Solan... [more]
A0A1J6J755_NICAT3.100e-1038.30Mechanosensitive ion channel protein n=6 Tax=Nicot... [more]
A0A2G3DGR6_CAPCH3.400e-1041.33Mechanosensitive ion channel protein 6 n=1 Tax=Cap... [more]
A0A4S4D1J7_CAMSI4.240e-1037.23Mechanosensitive ion channel protein n=2 Tax=Camel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109475contigH-elongata_contig109475:313..926 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.0
Seed ortholog evalue2.8e-34
Seed eggNOG ortholog2880.D8LMN4
KEGG koko:K02575,ko:K22048
KEGG TC1.A.23.4,2.A.1.8
KEGG Pathwayko00910,map00910
KEGG ModuleM00615
EggNOG free text desc.mechanosensitive ion channel activity
EggNOG OGsCOG0668@1,KOG4629@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000
Hectar predicted targeting categoryother localisation
Exons2
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929622.0957668-CDS-H-elongata_contig109475:312..5071622929622.0957668-CDS-H-elongata_contig109475:312..507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109475 313..507 -
1691679095.0815861-CDS-H-elongata_contig109475:312..5071691679095.0815861-CDS-H-elongata_contig109475:312..507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109475 313..507 -
1622929622.1075761-CDS-H-elongata_contig109475:839..9261622929622.1075761-CDS-H-elongata_contig109475:839..926Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109475 840..926 -
1691679095.0947273-CDS-H-elongata_contig109475:839..9261691679095.0947273-CDS-H-elongata_contig109475:839..926Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109475 840..926 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109475.769.1prot_H-elongata_contig109475.769.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109475 313..926 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109475.769.1

>prot_H-elongata_contig109475.769.1 ID=prot_H-elongata_contig109475.769.1|Name=mRNA_H-elongata_contig109475.769.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
YDVGDPVYFVDDTGVESWYIVTRINLLTTMFRRWDGQATILPNSVMATKT
IRNQWRSGPLLHNTMLAVSLDTPMEKLDHVKEGVAKGMRVRKPH
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mRNA from alignment at H-elongata_contig109475:313..926-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109475.769.1 ID=mRNA_H-elongata_contig109475.769.1|Name=mRNA_H-elongata_contig109475.769.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=614bp|location=Sequence derived from alignment at H-elongata_contig109475:313..926- (Himanthalia elongata Himel1 dioecious)
TACGATGTCGGAGACCCGGTGTATTTTGTCGACGACACCGGGGTCGAGTC CTGGTACATCGTCACGAGGATTAACTTGCTGACAACGGTGAGCCAAATAC GTGCTTTACCGATTACAACATAATGATCCTCCCATATAGTGTTATGTATG TCTGCCTGGTCATTACCTATAGCAGAGTAAGATCAACCGTATTTGGTTGC CTCCTGCTCGCGGTTAGCACCTCATCGATTTTGCTCTTTCGCTGCCCCTT TTTAAAAATCAATTTGTGACTTCTCTTATCCCCGCTCTTATTAAAAGGAA CCAATCTCAAAATTGCATAATATTCGTTCTACCCCCCCGCCCCCCCCTCT CCTAGCCCCTAGTCCCTCTTGTTACCCAACATATTCCCCTTGTCTGCTAT CGCACTACCACCCTGTCAGATGTTTAGGCGATGGGACGGGCAGGCTACCA TTTTGCCTAACAGTGTCATGGCCACAAAGACTATCAGAAACCAGTGGAGA TCGGGGCCACTCTTGCACAACACCATGCTGGCCGTTTCATTGGACACACC CATGGAAAAACTTGATCACGTCAAGGAGGGGGTCGCCAAGGGGATGCGGG TACGAAAGCCCCAC
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Coding sequence (CDS) from alignment at H-elongata_contig109475:313..926-

>mRNA_H-elongata_contig109475.769.1 ID=mRNA_H-elongata_contig109475.769.1|Name=mRNA_H-elongata_contig109475.769.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig109475:313..926- (Himanthalia elongata Himel1 dioecious)
TACGATGTCGGAGACCCGGTGTATTTTGTCGACGACACCGGGGTCGAGTC
CTGGTACATCGTCACGAGGATTAACTTGCTGACAACGTACGATGTCGGAG
ACCCGGTGTATTTTGTCGACGACACCGGGGTCGAGTCCTGGTACATCGTC
ACGAGGATTAACTTGCTGACAACGATGTTTAGGCGATGGGACGGGCAGGC
TACCATTTTGCCTAACAGTGTCATGGCCACAAAGACTATCAGAAACCAGT
GGAGATCGGGGCCACTCTTGCACAACACCATGCTGGCCGTTTCATTGGAC
ACACCCATGGAAAAACTTGATCACGTCAAGGAGGGGGTCGCCAAGGGGAT
GCGGGTACGAAAGCCCCACATGTTTAGGCGATGGGACGGGCAGGCTACCA
TTTTGCCTAACAGTGTCATGGCCACAAAGACTATCAGAAACCAGTGGAGA
TCGGGGCCACTCTTGCACAACACCATGCTGGCCGTTTCATTGGACACACC
CATGGAAAAACTTGATCACGTCAAGGAGGGGGTCGCCAAGGGGATGCGGG
TACGAAAGCCCCAC
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