mRNA_H-elongata_contig109409.765.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109409.765.1
Unique NamemRNA_H-elongata_contig109409.765.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig109409.765.1 vs. uniprot
Match: D8LC63_ECTSI (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC63_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 6.250e-28
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:    4 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLIDVQVVDAERYPQL 162
            LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKL DVQVVDAERYPQL
Sbjct:    2 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAERYPQL 54
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BLAST of mRNA_H-elongata_contig109409.765.1 vs. uniprot
Match: A0A7S3PVL2_9STRA (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PVL2_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.740e-25
Identity = 48/57 (84.21%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:    1 QLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLIDVQVVDAERYPQLVRL 171
            QLFYSFFKTLVGKE+AVELKNDV LTGTLHSVDQYLNVKL +VQVVD ++YPQL+ L
Sbjct:   12 QLFYSFFKTLVGKEVAVELKNDVVLTGTLHSVDQYLNVKLNNVQVVDKQKYPQLLAL 68
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BLAST of mRNA_H-elongata_contig109409.765.1 vs. uniprot
Match: A0A8J9SEU0_PHATR (Hypothetical protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SEU0_PHATR)

HSP 1 Score: 97.4 bits (241), Expect = 3.880e-25
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:    1 QLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLIDVQVVDAERYPQLVRL 171
            Q+F SFFKTLVGKE+AVELKNDV LTGTLHSVDQYLN+KLI VQVV  ERYPQLV L
Sbjct:    1 QIFLSFFKTLVGKEVAVELKNDVVLTGTLHSVDQYLNIKLIHVQVVQPERYPQLVAL 57
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BLAST of mRNA_H-elongata_contig109409.765.1 vs. uniprot
Match: A0A7S2U7M8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7M8_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 3.910e-25
Identity = 48/56 (85.71%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    4 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLIDVQVVDAERYPQLVRL 171
            LFYSFFKTLVGKE+A+ELKNDV LTGTLHSVDQYLNVKL DVQVV+ E+YPQLV L
Sbjct:   39 LFYSFFKTLVGKEVAIELKNDVVLTGTLHSVDQYLNVKLTDVQVVNKEQYPQLVPL 94
[Close]
BLAST of mRNA_H-elongata_contig109409.765.1 vs. uniprot
Match: A0A6U3SK19_9STRA (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3SK19_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 6.890e-25
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:    7 FYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLIDVQVVDAERYPQL 162
            F SFFKTL+GKEIAVELKNDVALTGTLHSVDQYLN+KL DVQVVDAER+PQL
Sbjct:    6 FNSFFKTLIGKEIAVELKNDVALTGTLHSVDQYLNIKLTDVQVVDAERFPQL 57
[Close]
BLAST of mRNA_H-elongata_contig109409.765.1 vs. uniprot
Match: A0A8J2SX90_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SX90_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 9.650e-25
Identity = 46/54 (85.19%), Postives = 51/54 (94.44%), Query Frame = 1 
Query:    4 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLIDVQVVDAERYPQLV 165
            LFYS FKTLVGKEIAVELKNDVALTGTLHS+DQYLN+KL+D +VVDA R+PQLV
Sbjct:    2 LFYSMFKTLVGKEIAVELKNDVALTGTLHSIDQYLNIKLLDARVVDAARHPQLV 55
[Close]
BLAST of mRNA_H-elongata_contig109409.765.1 vs. uniprot
Match: A0A7S3PVB5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PVB5_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 2.370e-24
Identity = 47/56 (83.93%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    4 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLIDVQVVDAERYPQLVRL 171
            LFYSFFKTLVGKE+AVELKNDV LTGTLHSVDQYLNVKL +VQVVD ++YPQL+ L
Sbjct:   44 LFYSFFKTLVGKEVAVELKNDVVLTGTLHSVDQYLNVKLNNVQVVDKQKYPQLLAL 99
[Close]
BLAST of mRNA_H-elongata_contig109409.765.1 vs. uniprot
Match: A0A835YRK1_9STRA (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRK1_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 3.010e-24
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    4 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLIDVQVVDAERYPQL 162
            LFYSFFKTLVGKE+AVELKNDV+LTGTLHSVDQYLNVKL  V+VVD ER+PQL
Sbjct:    2 LFYSFFKTLVGKEVAVELKNDVSLTGTLHSVDQYLNVKLTGVKVVDEERFPQL 54
[Close]
BLAST of mRNA_H-elongata_contig109409.765.1 vs. uniprot
Match: A0A4D9DC94_9STRA (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DC94_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 6.060e-24
Identity = 47/53 (88.68%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    4 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLIDVQVVDAERYPQL 162
            LFYSFFKTLVGKE+AVELKNDV LTG LHSVDQYLNVKL DVQVV  ERYPQL
Sbjct:    2 LFYSFFKTLVGKEVAVELKNDVELTGKLHSVDQYLNVKLEDVQVVKKERYPQL 54
[Close]
BLAST of mRNA_H-elongata_contig109409.765.1 vs. uniprot
Match: A0A7S2RW57_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RW57_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 7.290e-24
Identity = 46/52 (88.46%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:    7 FYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLIDVQVVDAERYPQL 162
            F SFFKTL+GKEIAVELKNDVALTGTLHSVDQYLN+KL DVQVVD+ER+PQL
Sbjct:   49 FNSFFKTLIGKEIAVELKNDVALTGTLHSVDQYLNIKLTDVQVVDSERFPQL 100
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109409.765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC63_ECTSI6.250e-2898.11U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=E... [more]
A0A7S3PVL2_9STRA1.740e-2584.21U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=C... [more]
A0A8J9SEU0_PHATR3.880e-2584.21Hypothetical protein n=2 Tax=Phaeodactylum tricorn... [more]
A0A7S2U7M8_9STRA3.910e-2585.71Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A6U3SK19_9STRA6.890e-2590.38U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=D... [more]
A0A8J2SX90_9STRA9.650e-2585.19Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3PVB5_9STRA2.370e-2483.93Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A835YRK1_9STRA3.010e-2486.79U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=T... [more]
A0A4D9DC94_9STRA6.060e-2488.68U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=N... [more]
A0A7S2RW57_9STRA7.290e-2488.46Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109409contigH-elongata_contig109409:1617..1787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue3.1e-20
Seed eggNOG ortholog2880.D8LC63
Preferred nameLSM2
KEGG koko:K10523,ko:K12621
KEGG Pathwayko03018,ko03040,ko04340,ko04341,map03018,map03040,map04340,map04341
KEGG ModuleM00354,M00384,M00396,M00397
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000932,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005688,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0030532,GO:0032991,GO:0034641,GO:0035770,GO:0036464,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0071011,GO:0071013,GO:0071704,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1902494,GO:1990726,GO:1990904
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsCOG1958@1,KOG3448@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929621.7370262-CDS-H-elongata_contig109409:1616..17871622929621.7370262-CDS-H-elongata_contig109409:1616..1787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109409 1617..1787 -
1691679094.8241765-CDS-H-elongata_contig109409:1616..17871691679094.8241765-CDS-H-elongata_contig109409:1616..1787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109409 1617..1787 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109409.765.1prot_H-elongata_contig109409.765.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109409 1617..1787 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109409.765.1

>prot_H-elongata_contig109409.765.1 ID=prot_H-elongata_contig109409.765.1|Name=mRNA_H-elongata_contig109409.765.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
QLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLIDVQVVDAER
YPQLVRL
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mRNA from alignment at H-elongata_contig109409:1617..1787-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109409.765.1 ID=mRNA_H-elongata_contig109409.765.1|Name=mRNA_H-elongata_contig109409.765.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig109409:1617..1787- (Himanthalia elongata Himel1 dioecious)
CAGCTGTTCTACTCTTTTTTCAAGACTCTCGTGGGGAAGGAAATCGCCGT
AGAGCTGAAAAACGACGTTGCTCTCACTGGCACTCTTCACTCGGTAGACC
AGTACCTTAACGTCAAGCTCATCGACGTGCAAGTCGTCGACGCTGAGCGG
TATCCACAACTGGTGAGACTT
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Coding sequence (CDS) from alignment at H-elongata_contig109409:1617..1787-

>mRNA_H-elongata_contig109409.765.1 ID=mRNA_H-elongata_contig109409.765.1|Name=mRNA_H-elongata_contig109409.765.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig109409:1617..1787- (Himanthalia elongata Himel1 dioecious)
CAGCTGTTCTACTCTTTTTTCAAGACTCTCGTGGGGAAGGAAATCGCCGT
AGAGCTGAAAAACGACGTTGCTCTCACTGGCACTCTTCACTCGGTAGACC
AGTACCTTAACGTCAAGCTCATCGACGTGCAAGTCGTCGACGCTGAGCGG
TATCCACAACTGGTGAGACTTCAGCTGTTCTACTCTTTTTTCAAGACTCT
CGTGGGGAAGGAAATCGCCGTAGAGCTGAAAAACGACGTTGCTCTCACTG
GCACTCTTCACTCGGTAGACCAGTACCTTAACGTCAAGCTCATCGACGTG
CAAGTCGTCGACGCTGAGCGGTATCCACAACTGGTGAGACTT
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