prot_H-elongata_contig109385.762.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig109385.762.1
Unique Name	prot_H-elongata_contig109385.762.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	86

Homology

[Close]

BLAST of mRNA_H-elongata_contig109385.762.1 vs. uniprot
Match: A0A6H5KKP9_9PHAE (DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKP9_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 3.190e-40
Identity = 73/85 (85.88%), Postives = 80/85 (94.12%), Query Frame = 0

Query:    1 LLINGATGIAVGMATNIPPHNLGEVVSATIALIREPGISDDQIFRILPAPDFPTGGCIMGLSGARKLYSTSNGGVTIRATTHTEV 85
            LLINGATGIAVGMATNIPPHNLGEVV+ATIALIR P + DDQ+FR+LPAPDFPTGG IMGL+GARKLY+TSNGGVT+RATTH EV
Sbjct:  324 LLINGATGIAVGMATNIPPHNLGEVVAATIALIRNPELPDDQLFRLLPAPDFPTGGRIMGLAGARKLYTTSNGGVTLRATTHIEV 408

[Close]

BLAST of mRNA_H-elongata_contig109385.762.1 vs. uniprot
Match: A0A836CKD9_9STRA (DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKD9_9STRA)

HSP 1 Score: 129 bits (325), Expect = 4.430e-33
Identity = 59/84 (70.24%), Postives = 74/84 (88.10%), Query Frame = 0

Query:    1 LLINGATGIAVGMATNIPPHNLGEVVSATIALIREPGISDDQIFRILPAPDFPTGGCIMGLSGARKLYSTSNGGVTIRATTHTE 84
            LL+NGATGIAVGMATNIPPHNLGE+  A +ALI++P + +  +F+I+PAPDFP+GG IMGL+GARK+Y+TSNG VT+RATTH E
Sbjct:  146 LLLNGATGIAVGMATNIPPHNLGELTDACVALIKDPELPEADLFKIVPAPDFPSGGTIMGLAGARKMYTTSNGSVTLRATTHIE 229

[Close]

BLAST of mRNA_H-elongata_contig109385.762.1 vs. uniprot
Match: W7TLA9_9STRA (DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLA9_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.370e-31
Identity = 56/84 (66.67%), Postives = 70/84 (83.33%), Query Frame = 0

Query:    1 LLINGATGIAVGMATNIPPHNLGEVVSATIALIREPGISDDQIFRILPAPDFPTGGCIMGLSGARKLYSTSNGGVTIRATTHTE 84
            LL+NGATGIAVGMATN+PPHNLGEV+  T+ALI +P +SDD++ R++PAPDFPTGG IMGL G RKLY+  +G + +RA TH E
Sbjct:  291 LLLNGATGIAVGMATNVPPHNLGEVLDGTLALIEDPSLSDDKLLRLIPAPDFPTGGDIMGLEGPRKLYTNGSGSIVMRAKTHME 374

[Close]

BLAST of mRNA_H-elongata_contig109385.762.1 vs. uniprot
Match: A0A0G4GL74_9ALVE (DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GL74_9ALVE)

HSP 1 Score: 124 bits (311), Expect = 3.490e-31
Identity = 59/84 (70.24%), Postives = 69/84 (82.14%), Query Frame = 0

Query:    1 LLINGATGIAVGMATNIPPHNLGEVVSATIALIREPGISDDQIFRILPAPDFPTGGCIMGLSGARKLYSTSNGGVTIRATTHTE 84
            LL+NGATGIAVGMATNIPPHNLGE+VSA IALI E  + DD +F+++P PDFPTGG I+G  GARKLY+TS GGV +RA  H E
Sbjct:  228 LLLNGATGIAVGMATNIPPHNLGELVSACIALIDERELPDDDLFQLVPGPDFPTGGIILGTQGARKLYTTSGGGVRVRARVHVE 311

[Close]

BLAST of mRNA_H-elongata_contig109385.762.1 vs. uniprot
Match: A0A0G4ESH9_VITBC (DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ESH9_VITBC)

HSP 1 Score: 123 bits (309), Expect = 6.490e-31
Identity = 57/84 (67.86%), Postives = 68/84 (80.95%), Query Frame = 0

Query:    1 LLINGATGIAVGMATNIPPHNLGEVVSATIALIREPGISDDQIFRILPAPDFPTGGCIMGLSGARKLYSTSNGGVTIRATTHTE 84
            LL+NGATGIAVGMATNIPPH LGE+V A IALI+ P +SD+++F ++PAPDFPTG  I+GL G RKLY T NG V +RA TH E
Sbjct:  184 LLLNGATGIAVGMATNIPPHQLGELVDACIALIKNPSLSDERLFSLIPAPDFPTGALIVGLEGVRKLYKTGNGAVVMRARTHVE 267

[Close]

BLAST of mRNA_H-elongata_contig109385.762.1 vs. uniprot
Match: A0A7S4F4W1_CHRCT (DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F4W1_CHRCT)

HSP 1 Score: 122 bits (307), Expect = 1.210e-30
Identity = 55/85 (64.71%), Postives = 71/85 (83.53%), Query Frame = 0

Query:    1 LLINGATGIAVGMATNIPPHNLGEVVSATIALIREPGISDDQIFRILPAPDFPTGGCIMGLSGARKLYSTSNGGVTIRATTHTEV 85
            LL+NGATGIAVGMATN PPHNLGE+V A   ++++P +SD+++F I+PAPDFP+GG IMGLSGAR++YST  G V +RA  HTE+
Sbjct:  262 LLLNGATGIAVGMATNCPPHNLGELVDALQVILKDPEVSDEKLFSIIPAPDFPSGGTIMGLSGARQMYSTGRGSVVVRAKAHTEM 346

[Close]

BLAST of mRNA_H-elongata_contig109385.762.1 vs. uniprot
Match: A0A2V3IEH5_9FLOR (DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEH5_9FLOR)

HSP 1 Score: 119 bits (299), Expect = 1.450e-29
Identity = 53/84 (63.10%), Postives = 68/84 (80.95%), Query Frame = 0

Query:    1 LLINGATGIAVGMATNIPPHNLGEVVSATIALIREPGISDDQIFRILPAPDFPTGGCIMGLSGARKLYSTSNGGVTIRATTHTE 84
            LL+NG +GIAVGMATNIPPHNLGE+VSA  ALI +P +SD+++F  +PAPDFPTGG I+G  GA+++Y T  G +T+RA  HTE
Sbjct:  224 LLVNGGSGIAVGMATNIPPHNLGELVSALTALIEDPDVSDERLFEFVPAPDFPTGGLILGTDGAKEMYRTGRGRITVRALAHTE 307

[Close]

BLAST of mRNA_H-elongata_contig109385.762.1 vs. uniprot
Match: UPI001D035179 (DNA gyrase subunit A n=1 Tax=Pseudogemmobacter sp. CC-YST710 TaxID=2755041 RepID=UPI001D035179)

HSP 1 Score: 119 bits (298), Expect = 1.980e-29
Identity = 58/84 (69.05%), Postives = 66/84 (78.57%), Query Frame = 0

Query:    1 LLINGATGIAVGMATNIPPHNLGEVVSATIALIREPGISDDQIFRILPAPDFPTGGCIMGLSGARKLYSTSNGGVTIRATTHTE 84
            +L+NGA GIAVGMATNIPPHNLGEVV AT+A+I  P IS +Q+  I+PAPDFPTGG I+G SGARK Y    G V IRA THTE
Sbjct:  180 MLVNGAGGIAVGMATNIPPHNLGEVVDATLAMIGNPDISTEQLMEIIPAPDFPTGGQILGRSGARKAYLEGRGSVIIRAKTHTE 263

[Close]

BLAST of mRNA_H-elongata_contig109385.762.1 vs. uniprot
Match: A0A257ZSW4_9RHOB (DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1 Tax=Rhodobacterales bacterium 12-65-15 TaxID=1970555 RepID=A0A257ZSW4_9RHOB)

HSP 1 Score: 113 bits (283), Expect = 6.260e-29
Identity = 55/84 (65.48%), Postives = 63/84 (75.00%), Query Frame = 0

Query:    1 LLINGATGIAVGMATNIPPHNLGEVVSATIALIREPGISDDQIFRILPAPDFPTGGCIMGLSGARKLYSTSNGGVTIRATTHTE 84
            +L+NGA GIAVGMATNIPPHNLGEV+  T+ALI  P IS + +  I+PAPDFPTGG I+G SGARK Y    G V IRA TH E
Sbjct:  180 MLVNGAGGIAVGMATNIPPHNLGEVIDGTLALIDNPDISMEALMEIIPAPDFPTGGLILGRSGARKAYLEGRGSVIIRAKTHIE 263

[Close]

BLAST of mRNA_H-elongata_contig109385.762.1 vs. uniprot
Match: A0A7S0JD38_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JD38_9EUKA)

HSP 1 Score: 112 bits (280), Expect = 1.310e-28
Identity = 52/85 (61.18%), Postives = 68/85 (80.00%), Query Frame = 0

Query:    1 LLINGATGIAVGMATNIPPHNLGEVVSATIALIREPGISDDQIFRILPAPDFPTGGCIMGLSGARKLYSTSNGGVTIRATTHTEV 85
            LL+NGA GIAVGMATN PPHNLGE+V A  AL+R+  ++D+ +F ++ APDFP+GG IMG SGAR++Y+T  G + IRAT HTE+
Sbjct:  179 LLLNGAAGIAVGMATNCPPHNLGELVDALQALLRDRTVADEVLFSLVRAPDFPSGGTIMGSSGARQMYATGRGSILIRATAHTEL 263

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig109385.762.1 vs. uniprot

BLAST of mRNA_H-elongata_contig109385.762.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KKP9_9PHAE	3.190e-40	85.88	DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Ectoca...	[more]
A0A836CKD9_9STRA	4.430e-33	70.24	DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Tribon...	[more]
W7TLA9_9STRA	1.370e-31	66.67	DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Monodo...	[more]
A0A0G4GL74_9ALVE	3.490e-31	70.24	DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Chrome...	[more]
A0A0G4ESH9_VITBC	6.490e-31	67.86	DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Vitrel...	[more]
A0A7S4F4W1_CHRCT	1.210e-30	64.71	DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Chryso...	[more]
A0A2V3IEH5_9FLOR	1.450e-29	63.10	DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Gracil...	[more]
UPI001D035179	1.980e-29	69.05	DNA gyrase subunit A n=1 Tax=Pseudogemmobacter sp....	[more]
A0A257ZSW4_9RHOB	6.260e-29	65.48	DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1...	[more]
A0A7S0JD38_9EUKA	1.310e-28	61.18	Hypothetical protein (Fragment) n=1 Tax=Calcidiscu...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002205	DNA topoisomerase, type IIA, subunit A/C-terminal	PFAM	PF00521	DNA_topoisoIV	coord: 1..83 e-value: 5.8E-23 score: 81.5
None	No IPR available	GENE3D	3.30.1360.40		coord: 1..85 e-value: 4.6E-33 score: 116.1
None	No IPR available	PANTHER	PTHR43493	FAMILY NOT NAMED	coord: 1..84
IPR013760	DNA topoisomerase, type IIA-like domain superfamily	SUPERFAMILY	56719	Type II DNA topoisomerase	coord: 1..84

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig109385	contig	H-elongata_contig109385:527..1790 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig109385.762.1	mRNA_H-elongata_contig109385.762.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig109385 527..1790 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig109385.762.1 ID=prot_H-elongata_contig109385.762.1|Name=mRNA_H-elongata_contig109385.762.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
LLINGATGIAVGMATNIPPHNLGEVVSATIALIREPGISDDQIFRILPAP
DFPTGGCIMGLSGARKLYSTSNGGVTIRATTHTEV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002205	Topo_IIA_A/C
IPR013760	Topo_IIA-like_dom_sf