mRNA_H-elongata_contig10938.761.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig10938.761.1 vs. uniprot
Match: D8LU75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU75_ECTSI) HSP 1 Score: 237 bits (605), Expect = 1.830e-74 Identity = 127/285 (44.56%), Postives = 182/285 (63.86%), Query Frame = 1
Query: 1 MEKSRANLVRNIAIEGFRRDERIFDSVQWYRGDDYGLDIMTNSHWRLLHGGFVEAVRRYQTETQSVPEDPGRGTCAWFTVFRDPVARLVSAFDHCQMAPQDPICGPADAMDLESFARYWGNFGLRQFALASVSSTDVKGWRVLPGGPQGPLSTWHLLKQYLSRGREKSLLDEGMLEDTLKQVKETLSTAYVAIGIAEEFDTTLKLFDKILSMPGVDWAASLRDSWAA------SARKNDIDAVKTARVERASAIPSIKAALKLDISLYEHAVGIFQKQVARAGLE 837
M+KS A+ R +A E +R+DE +FD+VQW RGD + D+M S W+LLHGG VE++R ++ GR +C W T+FR P+ARL+SA+DHC AP+DP+C P ++ L +FA WGNF +RQFALA+VS + VK W G S W+L+K+YL+RG + ++ +L L+ VK LST Y A+GIA+E TT+ LF K LSM G+DW++S WA + ++ D ++ +A P I +AL+LD+SLYEHAV +F+ QVA+ G+E
Sbjct: 1 MDKSGASGARRVATEQWRKDELVFDTVQWRRGDGFAADVMA-SRWKLLHGGCVESLRNHK----------GR-SCKWITIFRHPIARLLSAYDHCLGAPKDPVCPPTESTGLAAFAELWGNFAMRQFALAAVSPSAVKEWAAQRQARTGT-SMWYLVKEYLARG---GIAEDEVLGSKLEPVKGLLSTQYAAVGIAQELKTTMVLFSKALSMEGLDWSSS----WATLGINEEDKQDSEYDITESEPFRQALENPRIVSALRLDMSLYEHAVHVFKDQVAQFGIE 265
BLAST of mRNA_H-elongata_contig10938.761.1 vs. uniprot
Match: A0A6H5JQM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM0_9PHAE) HSP 1 Score: 238 bits (606), Expect = 2.840e-71 Identity = 125/285 (43.86%), Postives = 179/285 (62.81%), Query Frame = 1
Query: 1 MEKSRANLVRNIAIEGFRRDERIFDSVQWYRGDDYGLDIMTNSHWRLLHGGFVEAVRRYQTETQSVPEDPGRGTCAWFTVFRDPVARLVSAFDHCQMAPQDPICGPADAMDLESFARYWGNFGLRQFALASVSSTDVKGWRVLPGGPQGPLSTWHLLKQYLSRGREKSLLDEGMLEDTLKQVKETLSTAYVAIGIAEEFDTTLKLFDKILSMPGVDWAASLRDSWAASARKNDI------DAVKTARVERASAIPSIKAALKLDISLYEHAVGIFQKQVARAGLE 837
M+KS A+ R +A E +R+DE +FD+VQW RGD + D+M SHW+LLHGG VE++R ++ + C W T+FR P+ARL+SA+ HC AP+DP+C P ++ L FA WGNF +RQFAL SVS + VK W G S W+L+K+YL+RG + ++ +LE L+ VK LST Y A+GIA+E +TT+ LF K LSM G+DW++S WA ++ D ++ +A P I +AL+LD+SLYEHA+ +F+ QVA+ G+E
Sbjct: 279 MDKSGASGARRVATERWRKDELVFDTVQWRRGDGFAADVMA-SHWKLLHGGCVESLRNHKERS-----------CKWLTIFRHPIARLLSAYHHCLEAPKDPVCPPTESTGLVVFAELWGNFAMRQFALESVSPSAVKEWAAQRQARTGT-SMWYLVKEYLARG---GIAEDEVLESMLEPVKGLLSTQYAAVGIAQELETTMVLFSKALSMEGLDWSSS----WATLGINEEVKQDSEYDIAESEPFRQALENPRIVSALRLDMSLYEHAMHVFKDQVAQFGIE 543
BLAST of mRNA_H-elongata_contig10938.761.1 vs. uniprot
Match: D7G715_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G715_ECTSI) HSP 1 Score: 155 bits (393), Expect = 3.160e-41 Identity = 102/295 (34.58%), Postives = 151/295 (51.19%), Query Frame = 1
Query: 1 MEKSRANLVRNIAIEGFRRDERIFDSVQWYRGDDYGLDIMTN----SHWRLLHGGFVEAVRRYQTETQSVPEDPGRGTCAWFTVFRDPVARLVSAFDHCQMAPQDPICGP----ADAMDLESFARYWGNFGLRQFALASVSSTDVKGWRVLP--GGPQGPLST-------WHLLKQYLS--RGREKSLLDEGM-LEDTLKQVKETLSTAYVAIGIAEEFDTTLKLFDKILSMPGVDWAASLRDSWAASARKNDIDAVKTAR---VERASAIPSIKAALKLDISLYEHAVGIFQKQ 816
++K+ V+ + + + + +DS QW +G Y + + + W GG++EA+RR T + D R C WFTVFR PV+RLVSA+ +C+ P D +C + +DL +FAR+WGNF LRQFAL VS VK + V P GG G + W++LK +L+ G EG LE + V + L Y +GI E+++ TL LFD L MPG+ W R+ + S + N K + +++A + P I L LD+ LY AV IF +Q
Sbjct: 94 LQKAGGTTVKRLLFDSWGSESTTYDSYQWKKGQGYAESVAASLASPAGWSAAAGGYLEALRR----TPAFQPDDERTPCRWFTVFRHPVSRLVSAYYYCREDPSDQLCASEFVSSRNVDLVTFARHWGNFALRQFALGFVSHDKVKDFLVSPNGGGAMGLTAEQVELMPGWYMLKLFLNDRSGVADDTSPEGTRLEYMFRPVVDLLRDNYAVVGILEDWNATLSLFDSALDMPGMTW----REEFERSGKLNVDTRFKGEKQDVLQQALSDPEIVKHLSLDLRLYGQAVDIFNQQ 380
BLAST of mRNA_H-elongata_contig10938.761.1 vs. uniprot
Match: A0A6H5JY77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY77_9PHAE) HSP 1 Score: 152 bits (384), Expect = 1.970e-40 Identity = 88/271 (32.47%), Postives = 137/271 (50.55%), Query Frame = 1
Query: 67 IFDSVQWYRGDDYGLDIMTNSHWRLLHGGFVEAVRRYQTETQSVPEDPGRGTCAWFTVFRDPVARLVSAFDHCQMAPQDPICGP----ADAMDLESFARYWGNFGLRQFALASVSSTDVKGWRVLP-------GGPQGPLSTWHLLKQYLSRGREKSLLD----EGMLEDTLKQVKETLSTAYVAIGIAEEFDTTLKLFDKILSMPGVDWAASLRDSWAASARKNDIDAVKTARVERASAIPSIKAALKLDISLYEHAVGIFQKQVARAGL 834
+FD ++W G Y + + +GG+ E +R Y C WFTVFR PV+R+VSA+ +CQ A D +C A +DL +FA +WGN+GLRQFALAS+ + DV V+ G + W+ K YL + E L L +ETLST Y A+GI EE+D +++LF+++L++ DW + S ++ + + + ++ A P +K + LDI LY+HA+ + + QVA G+
Sbjct: 83 LFDDIEWSSGRSYA-ETFVKENAVFTYGGYTEGLRMYDDRD-----------CKWFTVFRHPVSRVVSAYFYCQRAHHDQLCAAVVLDASKVDLLTFAEHWGNYGLRQFALASIKAEDVFHNEVVSEFCQQARGHGDVCIPAWYRQKHYLHLPHQDDFCGPTQPESGLAQFLSSAQETLSTRYAAVGIIEEWDNSMELFNRVLNLRRFDWVKEFQKSGKKNSGGSQFETASKSALKAAWHSPELKKFIWLDILLYDHALSVHRSQVADLGI 341
BLAST of mRNA_H-elongata_contig10938.761.1 vs. uniprot
Match: D7FWQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ3_ECTSI) HSP 1 Score: 147 bits (371), Expect = 1.570e-37 Identity = 100/292 (34.25%), Postives = 148/292 (50.68%), Query Frame = 1
Query: 67 IFDSVQWYRGDD----YGLDIMTNSHWRLLHGGFVEAVRRYQTETQSVPEDPGRGTCAWFTVFRDPVARLVSAFDHCQMAPQDPICGP----ADAMDLESFARYWGNFGLRQFALASVSSTDVKGWRVLPGGPQ------GPLSTWHLLKQYLSR---------GREKSLLDE--------GMLEDTLKQVKETLSTAYVAIGIAEEFDTTLKLFDKILSMPGVDWAASLRDSWAASARKNDIDAVKTARVE-----RASAIPSIKAALKLDISLYEHAVGIFQKQVARAGL 834
I+DS QW GDD +G+ + W ++ GG+ EA+RR S P D G C +FT+FR P+AR+VSA+ +C+ D C A +DL +FA++WGNF +RQFAL V S V+ + P ++ W+ LK YL R G+ +++ E L D L+ + + + YVA+GI E+++TTL LFD L +PG+ W A A K +D K R+E +A +K ++LD+ LYEHAV +F +Q GL
Sbjct: 184 IYDSNQWKLGDDISANFGVKLARGETWNVMAGGYTEALRR------SEPVDAG---CRFFTLFRHPIARMVSAYFYCRSTLGDAACASEVVDAKDVDLLTFAKHWGNFAVRQFALGFVPSDGVQEYIRTPEAQALHDFDLKKIAGWYQLKMYLERPEKGDWGVPGQSEAMTVEHDAAATLEAPLYDLLQPAMDLIRSGYVAVGILEQWNTTLHLFDHALEIPGMYWGAQF-----AEGGKQRVD-YKNKRLESETLKQAWTDSELKKYMRLDLLLYEHAVDVFHEQARGYGL 460
BLAST of mRNA_H-elongata_contig10938.761.1 vs. uniprot
Match: D7FS84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS84_ECTSI) HSP 1 Score: 142 bits (358), Expect = 5.530e-37 Identity = 90/288 (31.25%), Postives = 143/288 (49.65%), Query Frame = 1
Query: 67 IFDSVQWYRGDDYGLDIMTNSHWRLLHGGFVEAVRRYQTETQSVPEDPGRGTCAWFTVFRDPVARLVSAFDHCQMAPQDPICGP------ADAMDLESFARYWGNFGLRQFALASVSSTDVKGWRV--------LPGGPQGPLSTWHLLKQYLSRGREKSLLDEGM---------------LEDTLKQVKETLSTAYVAIGIAEEFDTTLKLFDKILSMPGVDWAASLRDSWAASARKNDIDAVKTARVE---RASAIPSIKAALKLDISLYEHAVGIFQKQVARAGL 834
++DS QW G D+ D + + + L+ G + E +R + G C WFT+FR P+ RLVSA+ +C+ PQD +C AD DL +FA +WG+FGLRQFALA V ++ +V P + W+ LK YL + ++ EG + L+ V+E L+ Y A+G+ E+++T+L LF++ L MPG DW +++ + +KN E R+ P ++ L LD+ LY++AV + +QV + GL
Sbjct: 26 LYDSPQWLEGKDFAQDFLGDEN-SLMWGAYTEGLRPFG--------GLGLRECKWFTIFRHPIPRLVSAYFYCKKKPQDGLCATVALDANADDTDLYAFAEHWGDFGLRQFALAFVLPEELLANKVKYDATGICTPYHGKRSCPGWYELKLYLQQQLDEQEQGEGSRGWDGSGAAASGAATISHLLQPVQELLTNEYAAVGVLEQWETSLLLFNEALGMPGFDWP----ETFGSIGKKNSDGTFHNEEAEMLLRSWTDPRLRRYLSLDLLLYDYAVSVHNQQVDKYGL 300
BLAST of mRNA_H-elongata_contig10938.761.1 vs. uniprot
Match: D7G716_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G716_ECTSI) HSP 1 Score: 141 bits (355), Expect = 3.110e-35 Identity = 88/277 (31.77%), Postives = 146/277 (52.71%), Query Frame = 1
Query: 67 IFDSVQWYRGDDY----GLDIMTNSHWRLLHGGFVEAVRRYQTETQSVPEDPGRGTCAWFTVFRDPVARLVSAFDHCQMAPQDPICGP----ADAMDLESFARYWGNFGLRQFALASVSSTDVKGWRVL---------PGGPQGPLSTWHLLKQYLSRGREKSLLDEGMLEDTLKQVKETLSTAYVAIGIAEEFDTTLKLFDKILSMPGVDWAASLRDSWAASARKNDIDAV----KTARVERASAIPSIKAALKLDISLYEHAVGIFQKQVARAGL 834
I+DS++W GD++ G + W ++ GG+ EA+R + E G G C +FT+FR P+AR+VSA+ +C+ D C A +DL +FA++WGNF LRQFAL V S DV+ +++ GG G ++ ++ ++ + + L + L+ + + YVA+GI E+++TTL+LFD L MP ++W +S K+ +D V + +++A +K ++LD+ LYEHAV +F +Q GL
Sbjct: 205 IYDSMRWKFGDEFSAKFGAKLALGDKWNVMTGGYTEALR--------LSEPVGAG-CRFFTLFRHPIARMVSAYFYCRSVSGDVACASEVMQAKDVDLLTFAKHWGNFALRQFALGFVPSDDVQEYQLKMYLERPQKEDGGVLGQ-------REAMTAHQDAAATPDAPLYELLQPAMDLVRDGYVAVGILEQWNTTLRLFDHTLDMPVMNWEEQFAESG-----KHHVDIVNKQLEIETLQQAWTDSELKKYMRLDLLLYEHAVDVFHQQARSHGL 460
BLAST of mRNA_H-elongata_contig10938.761.1 vs. uniprot
Match: A0A6H5JQY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY7_9PHAE) HSP 1 Score: 125 bits (313), Expect = 3.080e-30 Identity = 86/268 (32.09%), Postives = 129/268 (48.13%), Query Frame = 1
Query: 88 YRGDDYGLDIMTNSHWRLLHGGFVEAVRRYQTETQSVPEDPGRGTCAWFTVFRDPVARLVSAFDHCQMAPQDPICG-----PADAMDLESFARYWGNFGLRQFALASVSSTDV-----------KGWRVLPG--GPQGPLSTWHLLKQYLSRGREKSLLDEGMLEDTLKQVKETLSTAYVAIGIAEEFDTTLKLFDKILSMPGVDWAASLRDSWAASARKNDIDA-VKTARVERASAIPSIKAALKLDISLYEHAVGIFQKQVARAGL 834
Y D G+ + + L+ G + E +R Y T C WFT+ R P+ARLVSAF++C + P D +C P D D+ FA +WGN G+ QFALA D+ K G GP G ST + K + + + L+ V+E L + Y A+GI E+++T++ LFD L +PG +W ++ A+S +N D+ K + + P +K L LDI LYEHA + + Q++R GL
Sbjct: 74 YNAGDRGVQQILDRRPSLIWGAYTEGLRPYATVLG----------CKWFTMVRHPIARLVSAFNYCGIVPSDQLCATRIHKPEDG-DIYDFAEHWGNHGVVQFALAFEDLNDILVTEVKSPPWYKAKLYFEGRLGPSGKTSTSANIST-------KDVCQNVWMPEILQPVEELLRSKYAAVGILEQWETSMMLFDHALQLPGFNWTSTS----ASSTPRNVHDSKAKNDLLVASMTDPVLKQILWLDILLYEHACSVHKAQLSRYGL 319
BLAST of mRNA_H-elongata_contig10938.761.1 vs. uniprot
Match: A0A6H5L061_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L061_9PHAE) HSP 1 Score: 106 bits (264), Expect = 6.140e-24 Identity = 77/221 (34.84%), Postives = 119/221 (53.85%), Query Frame = 1
Query: 241 FRDPVARLVSAFDHCQMAPQDPICGP----ADAMDLESFARYWGNFGLRQFALASVSSTDV---KGWRVLPGGPQGPLSTWHLLKQYLSRG----REKSLLDE-GMLEDT-----LKQVKETLSTAYVAIGIAEEFDTTLKLFDKILSMPGVDWAASLRDSWAASARKNDIDAVKTARVERASAI------PSIKAALKLDISLYEHAVGIFQKQVARAGL 834
++ P+ RLVSA+ +C+ D +C A DL +FA++WGN+GLRQF+LA V + DV + R + G P W+ +K+Y +E++L+ E G D L+ V++ LS Y A+GI E+++T++ LF+K L +P +W + R+ RKN +D K E A A+ P + L LDI LY+HAV + KQV G+
Sbjct: 18 YKCPIPRLVSAYFYCKQNGWDELCASMVLKAGNTDLHTFAKHWGNYGLRQFSLAFVGAEDVFAAEQERGIDGRPV-MFPGWYRVKEYFENQFDVEQERALMQETGASNDLAMSYLLQPVEDLLSRNYSAVGILEKWETSMTLFNKALKVPSFNWQTASRNL----GRKN-VD--KRLHDEEAHALRAAWDDPVLAKTLWLDIFLYDHAVAVHNKQVEEHGI 230
BLAST of mRNA_H-elongata_contig10938.761.1 vs. uniprot
Match: A0A2G8KXM0_STIJA (Uncharacterized protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KXM0_STIJA) HSP 1 Score: 60.8 bits (146), Expect = 6.320e-7 Identity = 56/219 (25.57%), Postives = 92/219 (42.01%), Query Frame = 1
Query: 223 CAWFTVFRDPVARLVSAFDHCQMAPQDPICGPADAMD--LESFARYWGNFGLRQFAL-ASVSSTDVKGWRVLPGGPQ----GPLSTWH----LLKQYLSRGREKSLLDEGMLEDTLKQVKETLSTAYVAIGIAEEFDTTLKLFDKILSMPGVDWAASLRDSWAASARKNDIDAVKTARVERASAI----------PSIKAALKLDISLYEHAVGIFQKQ 816
C++FT+ R+P R++S + CQ + +D +C +A + L+ +A + G++ Q L V + L G G W +L YL+ +E LLD V + L + +IGI EEFD +L +F I +P D ++ +V+R I P ++ AL D+ +Y+ A IF KQ
Sbjct: 155 CSYFTMVRNPYERIISCYFFCQRSSKDQLCTALNAANVTLKEWALHQGSYFFNQILLHPHVCQGTFDQYFKLDGIQHNFWYGDPPCWFKQKVILGHYLTSEQENILLD---------YVLDHLEQWFASIGIIEEFDLSLGMFQHIYGLPFKDDCVGKHFQTGKYKKRKKNVTTNEEQVDRDQMIQQLKAELQADPEVRRALHADLVIYDKAKEIFDKQ 364 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10938.761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10938.761.1 >prot_H-elongata_contig10938.761.1 ID=prot_H-elongata_contig10938.761.1|Name=mRNA_H-elongata_contig10938.761.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=281bp MEKSRANLVRNIAIEGFRRDERIFDSVQWYRGDDYGLDIMTNSHWRLLHGback to top mRNA from alignment at H-elongata_contig10938:3421..4263+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10938.761.1 ID=mRNA_H-elongata_contig10938.761.1|Name=mRNA_H-elongata_contig10938.761.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=843bp|location=Sequence derived from alignment at H-elongata_contig10938:3421..4263+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10938:3421..4263+ >mRNA_H-elongata_contig10938.761.1 ID=mRNA_H-elongata_contig10938.761.1|Name=mRNA_H-elongata_contig10938.761.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1686bp|location=Sequence derived from alignment at H-elongata_contig10938:3421..4263+ (Himanthalia elongata Himel1 dioecious)back to top |