mRNA_H-elongata_contig109299.755.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109299.755.1
Unique NamemRNA_H-elongata_contig109299.755.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig109299.755.1 vs. uniprot
Match: D7FM44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM44_ECTSI)

HSP 1 Score: 275 bits (702), Expect = 1.340e-85
Identity = 130/137 (94.89%), Postives = 135/137 (98.54%), Query Frame = 1
Query:   16 QDAIKGAEAQRVLGMHLTDERIEGFCKVSVCENVTESAVTVMHHAGIGSLQPNTVLFAWPDDWSKNYEKGERFVSMLRGAVNARKAVMVLKGDKKLPTPVNPARAGQTIDIWWVAKDGGLLLLVPYLLKLHVLWKRC 426
            +DA+KGAEAQRVLGMHLTDERIEGFCKVSVC+NVTESAVTVMHHAGIGSLQPNTVLFAWPDDWSKNYEKGERFVSMLRGAVNARKAVMVLKGDK+LPT +NPA AGQTIDIWWVAKDGGLLLLVPYLLKLHVLWKRC
Sbjct:  428 EDAVKGAEAQRVLGMHLTDERIEGFCKVSVCQNVTESAVTVMHHAGIGSLQPNTVLFAWPDDWSKNYEKGERFVSMLRGAVNARKAVMVLKGDKRLPTRLNPATAGQTIDIWWVAKDGGLLLLVPYLLKLHVLWKRC 564          
BLAST of mRNA_H-elongata_contig109299.755.1 vs. uniprot
Match: A0A6H5L1Z6_9PHAE (Ccc protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z6_9PHAE)

HSP 1 Score: 275 bits (702), Expect = 2.670e-84
Identity = 130/137 (94.89%), Postives = 135/137 (98.54%), Query Frame = 1
Query:   16 QDAIKGAEAQRVLGMHLTDERIEGFCKVSVCENVTESAVTVMHHAGIGSLQPNTVLFAWPDDWSKNYEKGERFVSMLRGAVNARKAVMVLKGDKKLPTPVNPARAGQTIDIWWVAKDGGLLLLVPYLLKLHVLWKRC 426
            +DA+KGAEAQRVLGMHLTDERIEGFCKVSVC+NVTESAVTVMHHAGIGSLQPNTVLFAWPDDWSKNYEKGERFVSMLRGAVNARKAVMVLKGDK+LPT +NPA AGQTIDIWWVAKDGGLLLLVPYLLKLHVLWKRC
Sbjct:  622 EDAVKGAEAQRVLGMHLTDERIEGFCKVSVCQNVTESAVTVMHHAGIGSLQPNTVLFAWPDDWSKNYEKGERFVSMLRGAVNARKAVMVLKGDKRLPTRLNPATAGQTIDIWWVAKDGGLLLLVPYLLKLHVLWKRC 758          
BLAST of mRNA_H-elongata_contig109299.755.1 vs. uniprot
Match: A0A835Z2U9_9STRA (Amino acid permease-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2U9_9STRA)

HSP 1 Score: 193 bits (491), Expect = 1.440e-54
Identity = 88/137 (64.23%), Postives = 106/137 (77.37%), Query Frame = 1
Query:   16 QDAIKGAEAQRVLGMHLTDERIEGFCKVSVCENVTESAVTVMHHAGIGSLQPNTVLFAWPDDWSKNYEKGERFVSMLRGAVNARKAVMVLKGDKKLPTPVNPARAGQTIDIWWVAKDGGLLLLVPYLLKLHVLWKRC 426
            QDA++  EAQ VL +HL DE++EGFCKVSVC +  ++A+T+MHHAG+G++QPN+VL AWPDDWSKN E G  FV+ LRGAV+A KAVMVLKG + LPT         T+DIWWVA DGGLLLLVPYLL LH  W RC
Sbjct:  599 QDAVRAEEAQGVLALHLKDEKMEGFCKVSVCHDPVDAAITIMHHAGMGTMQPNSVLLAWPDDWSKNSESGVAFVATLRGAVHAHKAVMVLKGAQALPTQYEVLEPSCTVDIWWVAHDGGLLLLVPYLLSLHPTWSRC 735          
BLAST of mRNA_H-elongata_contig109299.755.1 vs. uniprot
Match: A0A835Z753_9STRA (Amino acid permease-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z753_9STRA)

HSP 1 Score: 168 bits (426), Expect = 9.570e-46
Identity = 76/130 (58.46%), Postives = 99/130 (76.15%), Query Frame = 1
Query:   40 AQRVLGMHLTDERIEGFCKVSVCENVTESAVTVMHHAGIGSLQPNTVLFAWPDDWSK-NYEKGERFVSMLRGAVNARKAVMVLKGDKKLPTPVNPARAGQTIDIWWVAKDGGLLLLVPYLLKLHVLWKRC 426
            AQ VL +HL DE+I+GFCKVSVC +  ++A+T+MHHAG+G++QPN+VL AWP+DW + +   G  FV  +RGAV+A+KAVMVLKG + +PT      A  T+DIWWVA DGGLLLLVP+LL LH +W  C
Sbjct:  531 AQGVLSLHLKDEKIDGFCKVSVCRDPVDAAITIMHHAGMGTMQPNSVLLAWPEDWDEEDSTSGSDFVDTVRGAVHAQKAVMVLKGGQAMPTQYERLPASNTVDIWWVAHDGGLLLLVPHLLSLHPVWSSC 660          
BLAST of mRNA_H-elongata_contig109299.755.1 vs. uniprot
Match: A0A6G0WHY2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHY2_9STRA)

HSP 1 Score: 115 bits (288), Expect = 3.910e-27
Identity = 61/130 (46.92%), Postives = 78/130 (60.00%), Query Frame = 1
Query:   37 EAQRVLGMHLTDERIEGFCKVSVCENVTESAVTVMHHAGIGSLQPNTVLFAWPDDWSKNYEKGERFVSMLRGAVNARKAVMVLKGDKKLPTPVNPARAGQTIDIWWVAKDGGLLLLVPYLLKLHVLWKRC 426
            EA   L  HL   RI GF  V  C+NV  S  TV   +G+GSL+ NTV+  WP  W    E  E +V ML   +N +KA++VL+    LPT  N  +    ID+WWV  DGGLLLL+PYLLKLH +W++C
Sbjct:  583 EATLALREHLFSARISGFGHVYACKNVWRSMGTVAEASGMGSLRSNTVMVGWPLTWED--EDAEPYVDMLHEIINCKKALLVLQHMHLLPT--NEEKKRGNIDVWWVLHDGGLLLLMPYLLKLHRVWRKC 708          
BLAST of mRNA_H-elongata_contig109299.755.1 vs. uniprot
Match: A0A7R9YE43_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YE43_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.190e-25
Identity = 56/134 (41.79%), Postives = 82/134 (61.19%), Query Frame = 1
Query:   28 KGAEAQRVLGMHLTDERIEGFCKVSVCENVTESAVTVMHHAGIGSLQPNTVLFAWPDDWSKNYE-KGERFVSMLRGAVNARKAVMVLKGDKKLPTPVNPARAGQTIDIWWVAKDGGLLLLVPYLLKLHVLWKRC 426
            K   A +VL  +L +  ++GF +V + +N  E   T +  AG+G LQPN ++F +P         + E FVSMLR ++  +K  +V+KG ++LP    P   G TIDIWWV  DGG+L+L+PYLL LH +WK+C
Sbjct:  608 KARAATQVLRAYLREASVKGFARVIMTKNPAEGVFTAVQAAGVGILQPNCLMFTYPARSEMELPPQRETFVSMLRSSIACKKTTIVVKGAEQLPDNDQPFEHG-TIDIWWVVYDGGVLMLLPYLLSLHSVWKKC 740          
BLAST of mRNA_H-elongata_contig109299.755.1 vs. uniprot
Match: A0A485K431_9STRA (Aste57867_621 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K431_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.040e-24
Identity = 56/137 (40.88%), Postives = 75/137 (54.74%), Query Frame = 1
Query:   28 KGAEAQRVLGMHLTDERIEGFCKVSVCENVTESAVTVMHHAGIGSLQPNTVLFAWPDDWSKNYEKGE----RFVSMLRGAVNARKAVMVLKGDKKLPTPVNPARAGQTIDIWWVAKDGGLLLLVPYLLKLHVLWKRC 426
            K   A   L  HL + RI GF  V  C +   S   V   +G+GSL+ NTV+  WP  W      G      +V ML   +N +K++MVLK  +  PT  N      ++DIWWV  DGGLLLL+PYLL+LH +W++C
Sbjct:  582 KAQTATLALRQHLANARISGFGHVYACRHAMRSIGMVAESSGMGSLRSNTVMVGWPQTWRTAARNGTDEAIAYVDMLHDVINCKKSIMVLKHLETFPT--NDVVKKGSMDIWWVLHDGGLLLLMPYLLRLHPVWRKC 716          
BLAST of mRNA_H-elongata_contig109299.755.1 vs. uniprot
Match: A0A024TUN0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TUN0_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.040e-24
Identity = 55/128 (42.97%), Postives = 77/128 (60.16%), Query Frame = 1
Query:   49 VLGMHLTDERIEGFCKVSVCENVTESAVTVMHHAGIGSLQPNTVLFAWPDDWSKNYEKGER--FVSMLRGAVNARKAVMVLKGDKKLPTPVNPARAGQTIDIWWVAKDGGLLLLVPYLLKLHVLWKRC 426
            VL  HL   R+  F  V  C++  E+   V   +G+G L+ NTV+  WP+ W    E G+   +V ML   +N +K+VMVLK  + LP   N A+    +D+WWV  DGGLLLLVPYLL+LH +W++C
Sbjct:  580 VLRQHLATARLSAFGHVYACKDPLETMAMVAEASGMGCLRTNTVMVGWPNTW----ESGDAAPYVDMLHDMINCKKSVMVLKNMETLP--FNDAKKNGYMDVWWVLHDGGLLLLVPYLLRLHRVWRKC 701          
BLAST of mRNA_H-elongata_contig109299.755.1 vs. uniprot
Match: A0A553N9X6_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553N9X6_TIGCA)

HSP 1 Score: 108 bits (269), Expect = 1.430e-24
Identity = 50/134 (37.31%), Postives = 81/134 (60.45%), Query Frame = 1
Query:   28 KGAEAQRVLGMHLTDERIEGFCKVSVCENVTESAVTVMHHAGIGSLQPNTVLFAWPDDWSKNYEKGER-FVSMLRGAVNARKAVMVLKGDKKLPTPVNPARAGQTIDIWWVAKDGGLLLLVPYLLKLHVLWKRC 426
            +G  A+  +   + DE ++GF +V V ++ TE    ++  +G+G ++PNT++  WP+ W K  E   R FV  +R A +A+ A++V KG ++ P   +  +    IDIWW+  DGGLL+L+P+LLK H  WK C
Sbjct:  791 EGQAAKVSIQQTIKDEAVKGFAEVVVSKHTTEGICHLIQTSGLGGMKPNTIILGWPNSWRKRNEDSWRVFVDTIRNAASAKMALLVPKGIQRFPDSGDKVKGN--IDIWWIVHDGGLLMLLPFLLKQHRTWKNC 922          
BLAST of mRNA_H-elongata_contig109299.755.1 vs. uniprot
Match: UPI0018860FBE (solute carrier family 12 member 7 isoform X1 n=4 Tax=Syngnathidae TaxID=72045 RepID=UPI0018860FBE)

HSP 1 Score: 107 bits (268), Expect = 1.970e-24
Identity = 54/139 (38.85%), Postives = 84/139 (60.43%), Query Frame = 1
Query:   28 KGAEAQRV---LGMHLTDERIEGFCKVSVCENVTESAVTVMHHAGIGSLQPNTVLFAWPDDW--SKNYEKGERFVSMLRGAVNARKAVMVLKGDKKLPTPVNPARAGQ-TIDIWWVAKDGGLLLLVPYLLKLHVLWKRC 426
            K AEA++    +   +T ER +GFC V V  N+ +    ++  AG+G ++ NTVL AWP  W  S + +  + F+  +R   +A +A++V K     PT  N  R G+ TID+WWV  DGGLL+L+P+LL+ H +W++C
Sbjct:  769 KDAEAKKAEQNIKSSMTAERTKGFCHVVVSSNLRDGVSHLIQSAGLGGMKHNTVLMAWPGTWKQSNDTQSWKNFIETIRETTSAHQALLVAKNVDSFPT--NQERLGEGTIDVWWVVHDGGLLMLLPFLLRQHKVWRKC 905          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109299.755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM44_ECTSI1.340e-8594.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1Z6_9PHAE2.670e-8494.89Ccc protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A835Z2U9_9STRA1.440e-5464.23Amino acid permease-domain-containing protein n=1 ... [more]
A0A835Z753_9STRA9.570e-4658.46Amino acid permease-domain-containing protein n=1 ... [more]
A0A6G0WHY2_9STRA3.910e-2746.92Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7R9YE43_9STRA1.190e-2541.79Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A485K431_9STRA1.040e-2440.88Aste57867_621 protein n=1 Tax=Aphanomyces stellatu... [more]
A0A024TUN0_9STRA1.040e-2442.97Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A553N9X6_TIGCA1.430e-2437.31Uncharacterized protein n=1 Tax=Tigriopus californ... [more]
UPI0018860FBE1.970e-2438.85solute carrier family 12 member 7 isoform X1 n=4 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109299contigH-elongata_contig109299:776..2019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score275.4
Seed ortholog evalue1.5e-71
Seed eggNOG ortholog2880.D7FM44
KEGG koko:K14427
KEGG TC2.A.30.5
EggNOG free text desc.potassium:chloride symporter activity
EggNOG OGsCOG0531@1,KOG2082@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Exons3
Model size426
Cds size426
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109299.755.1prot_H-elongata_contig109299.755.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109299 776..2019 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929620.4672947-CDS-H-elongata_contig109299:775..9521622929620.4672947-CDS-H-elongata_contig109299:775..952Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109299 776..952 +
1691679094.1724913-CDS-H-elongata_contig109299:775..9521691679094.1724913-CDS-H-elongata_contig109299:775..952Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109299 776..952 +
1622929620.4791055-CDS-H-elongata_contig109299:1395..15391622929620.4791055-CDS-H-elongata_contig109299:1395..1539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109299 1396..1539 +
1691679094.186008-CDS-H-elongata_contig109299:1395..15391691679094.186008-CDS-H-elongata_contig109299:1395..1539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109299 1396..1539 +
1622929620.495342-CDS-H-elongata_contig109299:1914..20191622929620.495342-CDS-H-elongata_contig109299:1914..2019Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109299 1915..2019 +
1691679094.199819-CDS-H-elongata_contig109299:1914..20191691679094.199819-CDS-H-elongata_contig109299:1914..2019Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109299 1915..2019 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109299.755.1

>prot_H-elongata_contig109299.755.1 ID=prot_H-elongata_contig109299.755.1|Name=mRNA_H-elongata_contig109299.755.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=142bp
MAVWAQDAIKGAEAQRVLGMHLTDERIEGFCKVSVCENVTESAVTVMHHA
GIGSLQPNTVLFAWPDDWSKNYEKGERFVSMLRGAVNARKAVMVLKGDKK
LPTPVNPARAGQTIDIWWVAKDGGLLLLVPYLLKLHVLWKRC
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mRNA from alignment at H-elongata_contig109299:776..2019+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109299.755.1 ID=mRNA_H-elongata_contig109299.755.1|Name=mRNA_H-elongata_contig109299.755.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1244bp|location=Sequence derived from alignment at H-elongata_contig109299:776..2019+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGTGTGGGCGCAGGACGCCATCAAGGGGGCAGAGGCCCAGCGAGT GCTGGGCATGCACCTCACGGACGAGCGCATCGAGGGCTTCTGCAAGGTGT CGGTGTGCGAGAACGTTACCGAGAGCGCCGTGACGGTCATGCACCACGCC GGCATCGGGTCGCTGCAGCCGAACACTGTGAGAGAGTAACACGCTGTATT GTAGCTATACACCTACTCCGCCTCAAAACACGGCATCGATCTATCCATGT ACCAGTAAACAGTTTTGAAGGTGGCCGTACTCCCCCCCCCTCCCCCAACG CTATTTTCTCCCTCTTCCCTCTTACTATTTGACGAACGTCGCTCTAAAAC GCACATCCATGCGAAGCTACTACCTATGACTGATGTACCCCTGCGGAGGA CGCGTGGTAAATGGTCTCACGGCGAAGGCATGCAAAACTTGTGTCCGTCC ATCCCTCTCCCGCCCCCCGCCCCCCGCCCTCCTCCTCCCTTACTCCATGG TTGATGTTTCAAGGTGGTTGTGTTTTCTATACTTCCGTATTTAACCGTTT ACTGCCAACCTCTCCTTACCTCCGACACCTCCCTTTCCGCGTCCGTGTCC GTATCGCGCACGATCTCCAGGTGTTATTCGCGTGGCCGGATGACTGGAGC AAGAACTACGAGAAGGGAGAGCGCTTCGTATCGATGCTGAGGGGTGCCGT CAACGCGCGGAAAGCGGTCATGGTCCTCAAGGGGGACAAAAAGCTTCCCA CCCCTGTCAACCCCGTGAGTCACAGACGGCTACGAACAGCTAGATGTACC CTCTCATCCCCTCCCCCACCCTCGTTGCCTATTGCGAGAGCGGCGGAACG TTTGGCGAAGCCTCTCGTGCTTCAGCAACCGGAGAGTTTTGGTTCCATGT CTCCCGTGCTTGAGGTTGTTGGGTTCAGTATGCAGGCAAGCGGGACTAGA AACCTAGAGTGCGGTTTGGAACCGTGCGCTAGGTATTGGCAGTAGGAATA TTTATATCTTAAGCCGCGTCTTGCCCATCAGACGCTTAGCGCGCTATGGC GTTTTCCTTGCCCCTCCTTCCTTTTTCTGCCGCGGTCGGTATTTCCCGTT CTTGTACGCACGTCGACCGGTGCCCCCGTGTTAATGCAGGCAAGGGCCGG GCAGACGATTGATATCTGGTGGGTGGCCAAGGACGGCGGGCTCTTGCTCC TGGTCCCGTATCTCCTCAAGCTACATGTGCTGTGGAAGAGGTGC
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Coding sequence (CDS) from alignment at H-elongata_contig109299:776..2019+

>mRNA_H-elongata_contig109299.755.1 ID=mRNA_H-elongata_contig109299.755.1|Name=mRNA_H-elongata_contig109299.755.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=852bp|location=Sequence derived from alignment at H-elongata_contig109299:776..2019+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGTGTGGGCGCAGGACGCCATCAAGGGGGCAGAGGCCCAGCGAGT
GCTGGGCATGCACCTCACGGACGAGCGCATCGAGGGCTTCTGCAAGGTGT
CGGTGTGCGAGAACGTTACCGAGAGCGCCGTGACGGTCATGCACCACGCC
GGCATCGGGTCGCTGCAGCCGAACACTATGGCGGTGTGGGCGCAGGACGC
CATCAAGGGGGCAGAGGCCCAGCGAGTGCTGGGCATGCACCTCACGGACG
AGCGCATCGAGGGCTTCTGCAAGGTGTCGGTGTGCGAGAACGTTACCGAG
AGCGCCGTGACGGTCATGCACCACGCCGGCATCGGGTCGCTGCAGCCGAA
CACTGTGTTATTCGCGTGGCCGGATGACTGGAGCAAGAACTACGAGAAGG
GAGAGCGCTTCGTATCGATGCTGAGGGGTGCCGTCAACGCGCGGAAAGCG
GTCATGGTCCTCAAGGGGGACAAAAAGCTTCCCACCCCTGTCAACCCCGT
GTTATTCGCGTGGCCGGATGACTGGAGCAAGAACTACGAGAAGGGAGAGC
GCTTCGTATCGATGCTGAGGGGTGCCGTCAACGCGCGGAAAGCGGTCATG
GTCCTCAAGGGGGACAAAAAGCTTCCCACCCCTGTCAACCCCGCAAGGGC
CGGGCAGACGATTGATATCTGGTGGGTGGCCAAGGACGGCGGGCTCTTGC
TCCTGGTCCCGTATCTCCTCAAGCTACATGTGCTGTGGAAGAGGTGCGCA
AGGGCCGGGCAGACGATTGATATCTGGTGGGTGGCCAAGGACGGCGGGCT
CTTGCTCCTGGTCCCGTATCTCCTCAAGCTACATGTGCTGTGGAAGAGGT
GC
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