mRNA_H-elongata_contig109249.747.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109249.747.1
Unique NamemRNA_H-elongata_contig109249.747.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig109249.747.1 vs. uniprot
Match: A0A6H5JA57_9PHAE (Tr-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JA57_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 7.870e-32
Identity = 65/74 (87.84%), Postives = 67/74 (90.54%), Query Frame = 1 
Query:    1 DIRIAMIGNVDSGKSTLIGVLSSAGLDDGRGAARSLVLRHRHEQENGRTSAVTMEIMGYGKDGEQVQDRGTSGL 222
            DIRIAMIGNVDSGKSTLIGVLSS+GLDDGRGAARSLVLRHRHEQENGRTSAVTMEIMGY KDG+QV     S L
Sbjct:  105 DIRIAMIGNVDSGKSTLIGVLSSSGLDDGRGAARSLVLRHRHEQENGRTSAVTMEIMGYAKDGKQVVPTARSHL 178
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BLAST of mRNA_H-elongata_contig109249.747.1 vs. uniprot
Match: A0A7R9UAM3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAM3_9STRA)

HSP 1 Score: 114 bits (285), Expect = 8.100e-28
Identity = 56/66 (84.85%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:    1 DIRIAMIGNVDSGKSTLIGVLSSAGLDDGRGAARSLVLRHRHEQENGRTSAVTMEIMGYGKDGEQV 198
            D+R+AMIGNVDSGKSTLIGVL+SAGLDDGRG+ARSLVL+HRHEQ+NGRTSAVT+E+MGY +DGEQV
Sbjct:  150 DVRVAMIGNVDSGKSTLIGVLTSAGLDDGRGSARSLVLKHRHEQDNGRTSAVTVEVMGY-RDGEQV 214
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BLAST of mRNA_H-elongata_contig109249.747.1 vs. uniprot
Match: A0A7S2BKI3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BKI3_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.720e-27
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:    1 DIRIAMIGNVDSGKSTLIGVLSSAGLDDGRGAARSLVLRHRHEQENGRTSAVTMEIMGYGKDGEQV 198
            D+R+AMIGNVDSGKSTLIGVL+SA LDDGRG ARSLVLRHRHEQENGRTSAVT+E+MGY KDGEQV
Sbjct:   83 DVRVAMIGNVDSGKSTLIGVLTSACLDDGRGLARSLVLRHRHEQENGRTSAVTVELMGY-KDGEQV 147
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BLAST of mRNA_H-elongata_contig109249.747.1 vs. uniprot
Match: A0A7S3HE85_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HE85_9STRA)

HSP 1 Score: 108 bits (271), Expect = 2.690e-26
Identity = 59/72 (81.94%), Postives = 65/72 (90.28%), Query Frame = 1 
Query:    1 DIRIAMIGNVDSGKSTLIGVLSSAGLDDGRGAARSLVLRHRHEQENGRTSAVTMEIMGYGKDGEQVQDRGTS 216
            D RIAMIGNVDSGKSTLIG+L++A LDDGRGAARSLVL+HRHEQENGRTSAVT+EIMGY K+G QV   GTS
Sbjct:   64 DTRIAMIGNVDSGKSTLIGILTNATLDDGRGAARSLVLKHRHEQENGRTSAVTVEIMGY-KEGTQVY--GTS 132
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BLAST of mRNA_H-elongata_contig109249.747.1 vs. uniprot
Match: W7TYD2_9STRA (Gtp-binding protein 1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYD2_9STRA)

HSP 1 Score: 108 bits (271), Expect = 6.940e-26
Identity = 53/70 (75.71%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:    1 DIRIAMIGNVDSGKSTLIGVLSSAGLDDGRGAARSLVLRHRHEQENGRTSAVTMEIMGYGKDGEQVQDRG 210
            D+R+AMIGNVD+GKSTLIGVL++A LDDGRG+ARSLVL+HRHEQENGRTSAVT+E++GY   GEQV  +G
Sbjct:   87 DVRVAMIGNVDAGKSTLIGVLTNAILDDGRGSARSLVLKHRHEQENGRTSAVTIELLGYKGTGEQVLPQG 156
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BLAST of mRNA_H-elongata_contig109249.747.1 vs. uniprot
Match: A0A7S2WNE9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WNE9_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.670e-25
Identity = 53/66 (80.30%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:    1 DIRIAMIGNVDSGKSTLIGVLSSAGLDDGRGAARSLVLRHRHEQENGRTSAVTMEIMGYGKDGEQV 198
            ++R+AMIGNVDSGKSTLIGVL+SA LDDGRG ARS++LRHRHEQENGRTSAV++E+MGY +DGEQV
Sbjct:   40 EVRVAMIGNVDSGKSTLIGVLTSASLDDGRGLARSVMLRHRHEQENGRTSAVSVELMGY-RDGEQV 104
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BLAST of mRNA_H-elongata_contig109249.747.1 vs. uniprot
Match: A0A6V2X5T2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2X5T2_HETAK)

HSP 1 Score: 106 bits (264), Expect = 4.320e-25
Identity = 51/66 (77.27%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:    1 DIRIAMIGNVDSGKSTLIGVLSSAGLDDGRGAARSLVLRHRHEQENGRTSAVTMEIMGYGKDGEQV 198
            D+R+AMIGNVDSGKSTLIGVL++  LDDGRGAARS VL+HRHEQENGRTSAV++E+MGY +  EQV
Sbjct:   56 DVRVAMIGNVDSGKSTLIGVLTNCTLDDGRGAARSSVLKHRHEQENGRTSAVSVEVMGYNEKNEQV 121
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BLAST of mRNA_H-elongata_contig109249.747.1 vs. uniprot
Match: F0Y7C9_AURAN (Tr-type G domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7C9_AURAN)

HSP 1 Score: 101 bits (251), Expect = 1.800e-23
Identity = 47/59 (79.66%), Postives = 56/59 (94.92%), Query Frame = 1 
Query:    1 DIRIAMIGNVDSGKSTLIGVLSSAGLDDGRGAARSLVLRHRHEQENGRTSAVTMEIMGY 177
            D+R+AMIGNVDSGKSTLIGVL++ GLDDGRG ARSLVLRH+HEQENGRTS V++E+MG+
Sbjct:    4 DVRVAMIGNVDSGKSTLIGVLTAGGLDDGRGGARSLVLRHKHEQENGRTSTVSVELMGF 62
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BLAST of mRNA_H-elongata_contig109249.747.1 vs. uniprot
Match: A0A7S3K4J1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K4J1_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 4.440e-22
Identity = 47/66 (71.21%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    1 DIRIAMIGNVDSGKSTLIGVLSSAGLDDGRGAARSLVLRHRHEQENGRTSAVTMEIMGYGKDGEQV 198
            DIR+AMIGNVDSGKS+LIGVL++  LDDGRG ARSLVL+H+HEQ NGRTSAVT+E+MG+ ++ + V
Sbjct:   89 DIRVAMIGNVDSGKSSLIGVLTNGSLDDGRGLARSLVLKHKHEQSNGRTSAVTVELMGFKEEHQIV 154
[Close]
BLAST of mRNA_H-elongata_contig109249.747.1 vs. uniprot
Match: A0A836C8C3_9STRA (Elongation factor Tu GTP binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8C3_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 5.130e-22
Identity = 49/61 (80.33%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:   16 MIGNVDSGKSTLIGVLSSAGLDDGRGAARSLVLRHRHEQENGRTSAVTMEIMGYGKDGEQV 198
            MIGNVDSGKSTLIGVL +   DDGRG+ARSLVL+HRHEQENGRTSAVT EIMGY  +G+QV
Sbjct:    1 MIGNVDSGKSTLIGVLCNRCTDDGRGSARSLVLKHRHEQENGRTSAVTTEIMGYTAEGDQV 61
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109249.747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JA57_9PHAE7.870e-3287.84Tr-type G domain-containing protein n=2 Tax=Ectoca... [more]
A0A7R9UAM3_9STRA8.100e-2884.85Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2BKI3_9STRA1.720e-2787.88Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3HE85_9STRA2.690e-2681.94Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
W7TYD2_9STRA6.940e-2675.71Gtp-binding protein 1 n=2 Tax=Monodopsidaceae TaxI... [more]
A0A7S2WNE9_9STRA1.670e-2580.30Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A6V2X5T2_HETAK4.320e-2577.27Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
F0Y7C9_AURAN1.800e-2379.66Tr-type G domain-containing protein (Fragment) n=1... [more]
A0A7S3K4J1_9STRA4.440e-2271.21Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A836C8C3_9STRA5.130e-2280.33Elongation factor Tu GTP binding domain-containing... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109249contigH-elongata_contig109249:222..862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.5
Seed ortholog evalue1.1e-23
Seed eggNOG ortholog2880.D7FIQ8
EggNOG free text desc.GTP metabolic process
EggNOG OGsCOG5258@1,KOG0463@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGTPBP1, EF1alpha-like GTPase
Ec32 orthologEc-27_000690.1
Exons2
Model size252
Cds size237
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109249.747.1prot_H-elongata_contig109249.747.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109249 222..847 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929619.8191278-CDS-H-elongata_contig109249:221..4381622929619.8191278-CDS-H-elongata_contig109249:221..438Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109249 222..438 -
1691679093.9126997-CDS-H-elongata_contig109249:221..4381691679093.9126997-CDS-H-elongata_contig109249:221..438Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109249 222..438 -
1622929619.8411126-CDS-H-elongata_contig109249:827..8471622929619.8411126-CDS-H-elongata_contig109249:827..847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109249 828..847 -
1691679093.9275389-CDS-H-elongata_contig109249:827..8471691679093.9275389-CDS-H-elongata_contig109249:827..847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109249 828..847 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929619.8600385-UTR-H-elongata_contig109249:847..8621622929619.8600385-UTR-H-elongata_contig109249:847..862Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig109249 848..862 -
1691679093.9414704-UTR-H-elongata_contig109249:847..8621691679093.9414704-UTR-H-elongata_contig109249:847..862Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig109249 848..862 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109249.747.1

>prot_H-elongata_contig109249.747.1 ID=prot_H-elongata_contig109249.747.1|Name=mRNA_H-elongata_contig109249.747.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
MIGNVDSGKSTLIGVLSSAGLDDGRGAARSLVLRHRHEQENGRTSAVTME
IMGYGKDGEQVQDRGTSGLIFIVRLVQLR
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mRNA from alignment at H-elongata_contig109249:222..862-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109249.747.1 ID=mRNA_H-elongata_contig109249.747.1|Name=mRNA_H-elongata_contig109249.747.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=641bp|location=Sequence derived from alignment at H-elongata_contig109249:222..862- (Himanthalia elongata Himel1 dioecious)
GACATCCGCATTGCCATGATCGGCAACGTCGATAGGTAACAATGATAACG
ATAATGGCTTGGTTCATACGTACTTCTTGATATTTTCTCTCTTGACTGTC
TTTTTCCAACGGAATGTTACCAGACCAAGAATATTATGGTGTAGACACGC
CATACAGACGTGAACTCCTCTCAGGCGTTTCGTTCACCACGAGACTCGCT
CTCCCAATCCGTGAAGGCATCTCTATACAGCTGAAGTCGTCGATCCCGTC
AGCCCCTTGAGTAGCCGTCACTAAATTACGAACCCGTCGTCTCATCGATC
TTGTTCGTAGAGCAGCGGGGTAACCCGCAACCCTCGCCTGGCTGGTCCTC
GTGGCTGCGGCGCCGTATGCTCTCTGGCCCGCGCTCGCCCTTGTCGTATG
CCCTCCTCCCCACTCTCTTGGCAGCGGCAAGTCGACGTTGATAGGGGTGT
TGTCAAGTGCCGGCCTGGACGATGGCCGCGGCGCTGCACGTAGCCTGGTG
CTCCGACACCGCCACGAGCAGGAAAACGGGCGTACATCGGCGGTAACGAT
GGAGATCATGGGCTACGGCAAAGATGGCGAGCAGGTACAAGATAGAGGCA
CGAGCGGGTTAATTTTTATCGTTCGACTGGTTCAGCTGCGG
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Coding sequence (CDS) from alignment at H-elongata_contig109249:222..862-

>mRNA_H-elongata_contig109249.747.1 ID=mRNA_H-elongata_contig109249.747.1|Name=mRNA_H-elongata_contig109249.747.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig109249:222..862- (Himanthalia elongata Himel1 dioecious)
ATGATCGGCAACGTCGATAGATGATCGGCAACGTCGATAGCGGCAAGTCG
ACGTTGATAGGGGTGTTGTCAAGTGCCGGCCTGGACGATGGCCGCGGCGC
TGCACGTAGCCTGGTGCTCCGACACCGCCACGAGCAGGAAAACGGGCGTA
CATCGGCGGTAACGATGGAGATCATGGGCTACGGCAAAGATGGCGAGCAG
GTACAAGATAGAGGCACGAGCGGGTTAATTTTTATCGTTCGACTGGTTCA
GCTGCGGCGGCAAGTCGACGTTGATAGGGGTGTTGTCAAGTGCCGGCCTG
GACGATGGCCGCGGCGCTGCACGTAGCCTGGTGCTCCGACACCGCCACGA
GCAGGAAAACGGGCGTACATCGGCGGTAACGATGGAGATCATGGGCTACG
GCAAAGATGGCGAGCAGGTACAAGATAGAGGCACGAGCGGGTTAATTTTT
ATCGTTCGACTGGTTCAGCTGCGG
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