mRNA_H-elongata_contig109248.746.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109248.746.1
Unique NamemRNA_H-elongata_contig109248.746.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig109248.746.1 vs. uniprot
Match: A0A6H5JJZ9_9PHAE (AAA domain-containing protein n=2 Tax=Ochrophyta TaxID=2696291 RepID=A0A6H5JJZ9_9PHAE)

HSP 1 Score: 488 bits (1256), Expect = 4.050e-171
Identity = 246/249 (98.80%), Postives = 249/249 (100.00%), Query Frame = 1 
Query:    1 QVARCTKIINAGQDDAKYVINVRQIAKFVVGLGEKVSPTDVEEGMRVGVDRTKYSVQIPLPPKIDPTVSLMTVEDKPDVTYEDVGGAKDALEKLREVVELPLLHPERFVTLGIDPPKGVLLFGPPGTGKTLSARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFTMARTKKACIVFFDEIDAIGGSRTGGDDSGGDNEVQRTMLQIVSELDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKV 747
            QVARCTKIINAGQ+DAKYVINVRQIAKFVVGLGEKVSPTDVEEGMRVGVDRTKYSVQIPLPPKIDPTVSLMTVEDKPDVTYEDVGGAKDALEKLREVVELPLLHPERFVTLGIDPPKGVLLFGPPGTGKTLSARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFTMAR+KKACIVFFDEIDAIGGSRTGGDDSGGDNEVQRTMLQIV+ELDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKV
Sbjct:   96 QVARCTKIINAGQEDAKYVINVRQIAKFVVGLGEKVSPTDVEEGMRVGVDRTKYSVQIPLPPKIDPTVSLMTVEDKPDVTYEDVGGAKDALEKLREVVELPLLHPERFVTLGIDPPKGVLLFGPPGTGKTLSARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFTMARSKKACIVFFDEIDAIGGSRTGGDDSGGDNEVQRTMLQIVTELDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKV 344
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BLAST of mRNA_H-elongata_contig109248.746.1 vs. uniprot
Match: A0A836CGS4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGS4_9STRA)

HSP 1 Score: 476 bits (1225), Expect = 2.090e-166
Identity = 236/249 (94.78%), Postives = 246/249 (98.80%), Query Frame = 1 
Query:    1 QVARCTKIINAGQDDAKYVINVRQIAKFVVGLGEKVSPTDVEEGMRVGVDRTKYSVQIPLPPKIDPTVSLMTVEDKPDVTYEDVGGAKDALEKLREVVELPLLHPERFVTLGIDPPKGVLLFGPPGTGKTLSARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFTMARTKKACIVFFDEIDAIGGSRTGGDDSGGDNEVQRTMLQIVSELDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKV 747
            QVARCTKII+AGQDDAKYVINVRQIAKFVVGLGEKVSPTD+EEGMRVGVDRTKYS+QIPLPPKIDPTVSLMTVEDKPDVTYEDVGGAKDALEKLREVVELPLLHPERFVTLGIDPPKGVLL+GPPGTGKTLSARAVANRTDACFIRVIGSELVQKYVGEGARMVRE+FTMAR+KKACI+FFDE+DAIGGSR GG+D G DNEVQRTMLQIV+ELDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKV
Sbjct:   96 QVARCTKIIDAGQDDAKYVINVRQIAKFVVGLGEKVSPTDIEEGMRVGVDRTKYSIQIPLPPKIDPTVSLMTVEDKPDVTYEDVGGAKDALEKLREVVELPLLHPERFVTLGIDPPKGVLLYGPPGTGKTLSARAVANRTDACFIRVIGSELVQKYVGEGARMVREIFTMARSKKACIIFFDEVDAIGGSRGGGEDGGSDNEVQRTMLQIVTELDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKV 344
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BLAST of mRNA_H-elongata_contig109248.746.1 vs. uniprot
Match: A0A418CD62_9STRA (AAA domain-containing protein (Fragment) n=11 Tax=Saprolegniaceae TaxID=4764 RepID=A0A418CD62_9STRA)

HSP 1 Score: 465 bits (1197), Expect = 1.480e-161
Identity = 228/256 (89.06%), Postives = 246/256 (96.09%), Query Frame = 1 
Query:    1 QVARCTKIINAGQDDAKYVINVRQIAKFVVGLGEKVSPTDVEEGMRVGVDRTKYSVQIPLPPKIDPTVSLMTVEDKPDVTYEDVGGAKDALEKLREVVELPLLHPERFVTLGIDPPKGVLLFGPPGTGKTLSARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFTMARTKKACIVFFDEIDAIGGSRTGGDDSGGDNEVQRTMLQIVSELDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVRITASRL 768
            QVARCTKIINAG+DDAKY+INV+QIAKFVVGLGEKV+PTD+EEGMRVGVDRTKY++QIPLPPKIDPTVSLMTVEDKPDVTY+DVGG KD+LEKLREVVELPLLHPERFV LGIDPPKGVLL+GPPGTGKTLSARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFTMAR+KKACIVFFDE+DAIGG+R+ G++ G DNEVQRTMLQIV+ELDGFDPRGNIKVLMATNRPDTLDPAL+RPGRLDRKV  T   L
Sbjct:   97 QVARCTKIINAGEDDAKYMINVKQIAKFVVGLGEKVAPTDIEEGMRVGVDRTKYAIQIPLPPKIDPTVSLMTVEDKPDVTYDDVGGCKDSLEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLSARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFTMARSKKACIVFFDEVDAIGGARSSGEEGGTDNEVQRTMLQIVTELDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFTVPEL 352
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BLAST of mRNA_H-elongata_contig109248.746.1 vs. uniprot
Match: A0A7S3JSE5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JSE5_9STRA)

HSP 1 Score: 463 bits (1191), Expect = 3.190e-161
Identity = 228/249 (91.57%), Postives = 244/249 (97.99%), Query Frame = 1 
Query:    1 QVARCTKIINAGQDDAKYVINVRQIAKFVVGLGEKVSPTDVEEGMRVGVDRTKYSVQIPLPPKIDPTVSLMTVEDKPDVTYEDVGGAKDALEKLREVVELPLLHPERFVTLGIDPPKGVLLFGPPGTGKTLSARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFTMARTKKACIVFFDEIDAIGGSRTGGDDSGGDNEVQRTMLQIVSELDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKV 747
            QVARCTK+I+ G ++AKYVINV+QIAKFVVGLGEKV+PTDVEEGMRVGVDRTKY++QIPLPPKIDPTVSLMTVEDKPDVTY+DVGGAK+ALEKLREVVELPLLHPERF+TLGIDPPKGVLL+GPPGTGKTLSARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFTMAR+KKACIVFFDE+DAIGGSRTGGDD   D+EVQRTMLQIV+ELDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKV
Sbjct:   97 QVARCTKVIDEGSEEAKYVINVKQIAKFVVGLGEKVAPTDVEEGMRVGVDRTKYAIQIPLPPKIDPTVSLMTVEDKPDVTYDDVGGAKEALEKLREVVELPLLHPERFLTLGIDPPKGVLLYGPPGTGKTLSARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFTMARSKKACIVFFDEVDAIGGSRTGGDDGNADHEVQRTMLQIVTELDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKV 345
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BLAST of mRNA_H-elongata_contig109248.746.1 vs. uniprot
Match: A0A0X7YKY4_GLOUL (26S protease regulatory subunit 7 (Fragment) n=11 Tax=Globisporangium ultimum TaxID=2052682 RepID=A0A0X7YKY4_GLOUL)

HSP 1 Score: 459 bits (1180), Expect = 3.410e-161
Identity = 225/256 (87.89%), Postives = 245/256 (95.70%), Query Frame = 1 
Query:    1 QVARCTKIINAGQDDAKYVINVRQIAKFVVGLGEKVSPTDVEEGMRVGVDRTKYSVQIPLPPKIDPTVSLMTVEDKPDVTYEDVGGAKDALEKLREVVELPLLHPERFVTLGIDPPKGVLLFGPPGTGKTLSARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFTMARTKKACIVFFDEIDAIGGSRTGGDDSGGDNEVQRTMLQIVSELDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVRITASRL 768
            QVARC+KIINAG++DAKY+INV+QIAKFVVGLGEKV+PTD+EEGMRVGVDRTKY++QIPLPPKIDPTVSLMTVEDKPDVTY++VGGAKDALEKLREVVELPLLHPERFV LGIDPPKGVLL+GPPGTGKTLSARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFTMAR+KKACIVFFDE+DAIGG+R+  ++ G DNEVQRTMLQIV+ELDGFDPRGNIKVLMATNRPDTLDPAL+RPGRLDRKV      L
Sbjct:   28 QVARCSKIINAGEEDAKYMINVKQIAKFVVGLGEKVAPTDIEEGMRVGVDRTKYAIQIPLPPKIDPTVSLMTVEDKPDVTYDEVGGAKDALEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLSARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFTMARSKKACIVFFDEVDAIGGARSSSEEGGTDNEVQRTMLQIVTELDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFNLPEL 283
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BLAST of mRNA_H-elongata_contig109248.746.1 vs. uniprot
Match: A0A6V1T8U9_HETAK (Hypothetical protein n=2 Tax=Chattonellaceae TaxID=658124 RepID=A0A6V1T8U9_HETAK)

HSP 1 Score: 461 bits (1187), Expect = 1.250e-160
Identity = 228/249 (91.57%), Postives = 242/249 (97.19%), Query Frame = 1 
Query:    1 QVARCTKIINAGQDDAKYVINVRQIAKFVVGLGEKVSPTDVEEGMRVGVDRTKYSVQIPLPPKIDPTVSLMTVEDKPDVTYEDVGGAKDALEKLREVVELPLLHPERFVTLGIDPPKGVLLFGPPGTGKTLSARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFTMARTKKACIVFFDEIDAIGGSRTGGDDSGGDNEVQRTMLQIVSELDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKV 747
            QVARCTKIINAGQ+DAKYVINVRQIAKFVV LGEKV+PTDVEEGMRVGVDR KYS+QIPLPPKIDPTVSLMTVEDKPDVTY+DVGGAK+ LE+LREVVELPLLHPERFVTLGIDPPKGV+L+GPPGTGKTLSARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFTMAR+KKACI+FFDEIDAIGGSRTG D++  DNEVQRTMLQIV+ELDGFDPRGNIKVLMATNRPDTLDPAL RPGR+DRKV
Sbjct:   96 QVARCTKIINAGQEDAKYVINVRQIAKFVVALGEKVAPTDVEEGMRVGVDRAKYSIQIPLPPKIDPTVSLMTVEDKPDVTYDDVGGAKEPLEQLREVVELPLLHPERFVTLGIDPPKGVMLYGPPGTGKTLSARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFTMARSKKACIIFFDEIDAIGGSRTGSDEANSDNEVQRTMLQIVTELDGFDPRGNIKVLMATNRPDTLDPALCRPGRIDRKV 344
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BLAST of mRNA_H-elongata_contig109248.746.1 vs. uniprot
Match: M4BLV6_HYAAE (AAA domain-containing protein n=44 Tax=Oomycota TaxID=4762 RepID=M4BLV6_HYAAE)

HSP 1 Score: 460 bits (1184), Expect = 4.540e-160
Identity = 226/256 (88.28%), Postives = 245/256 (95.70%), Query Frame = 1 
Query:    1 QVARCTKIINAGQDDAKYVINVRQIAKFVVGLGEKVSPTDVEEGMRVGVDRTKYSVQIPLPPKIDPTVSLMTVEDKPDVTYEDVGGAKDALEKLREVVELPLLHPERFVTLGIDPPKGVLLFGPPGTGKTLSARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFTMARTKKACIVFFDEIDAIGGSRTGGDDSGGDNEVQRTMLQIVSELDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVRITASRL 768
            QVARCTKIINAG+++AKY+INV+QIAKFVVGLGEKV+PTD+EEGMRVGVDRTKY++QIPLPPKIDPTVSLMTVEDKPDVTY+DVGGAKDALEKLREVVELPLLHPERFV LGIDPPKGVLL+GPPGTGKTLSARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFTMAR+KKACIVFFDE+DAIGG+R+  ++ G DNEVQRTMLQIV+ELDGFDPRGNIKVLMATNRPDTLDPAL+RPGRLDRKV      L
Sbjct:  103 QVARCTKIINAGEEEAKYMINVKQIAKFVVGLGEKVAPTDIEEGMRVGVDRTKYAIQIPLPPKIDPTVSLMTVEDKPDVTYDDVGGAKDALEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLSARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFTMARSKKACIVFFDEVDAIGGARSSSEEGGTDNEVQRTMLQIVTELDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFNLPEL 358
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BLAST of mRNA_H-elongata_contig109248.746.1 vs. uniprot
Match: A0A397CV15_9STRA (AAA domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CV15_9STRA)

HSP 1 Score: 465 bits (1197), Expect = 3.250e-159
Identity = 228/256 (89.06%), Postives = 246/256 (96.09%), Query Frame = 1 
Query:    1 QVARCTKIINAGQDDAKYVINVRQIAKFVVGLGEKVSPTDVEEGMRVGVDRTKYSVQIPLPPKIDPTVSLMTVEDKPDVTYEDVGGAKDALEKLREVVELPLLHPERFVTLGIDPPKGVLLFGPPGTGKTLSARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFTMARTKKACIVFFDEIDAIGGSRTGGDDSGGDNEVQRTMLQIVSELDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVRITASRL 768
            QVARCTKIINAG+DDAKY+INV+QIAKFVVGLGEKV+PTD+EEGMRVGVDRTKY++QIPLPPKIDPTVSLMTVEDKPDVTY+DVGG KD+LEKLREVVELPLLHPERFV LGIDPPKGVLL+GPPGTGKTLSARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFTMAR+KKACIVFFDE+DAIGG+R+ G++ G DNEVQRTMLQIV+ELDGFDPRGNIKVLMATNRPDTLDPAL+RPGRLDRKV  T   L
Sbjct:   97 QVARCTKIINAGEDDAKYMINVKQIAKFVVGLGEKVAPTDIEEGMRVGVDRTKYAIQIPLPPKIDPTVSLMTVEDKPDVTYDDVGGCKDSLEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLSARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFTMARSKKACIVFFDEVDAIGGARSSGEEGGTDNEVQRTMLQIVTELDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFTVPEL 352
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BLAST of mRNA_H-elongata_contig109248.746.1 vs. uniprot
Match: F0YJ93_AURAN (26S proteasome ATPase subunit n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0YJ93_AURAN)

HSP 1 Score: 457 bits (1177), Expect = 4.140e-159
Identity = 227/250 (90.80%), Postives = 243/250 (97.20%), Query Frame = 1 
Query:    1 QVARCTKIINAGQDDAKYVINVRQIAKFVVGLGEKVSPTDVEEGMRVGVDRTKYSVQIPLPPKIDPTVSLMTVEDKPDVTYEDVGGAKDALEKLREVVELPLLHPERFVTLGIDPPKGVLLFGPPGTGKTLSARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFTMARTKKACIVFFDEIDAIGGSRTGGD-DSGGDNEVQRTMLQIVSELDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKV 747
            QVARCTKII+ G +D KYVINV+QIAKFVVGLGEKV+PTDVEEGMRVGVDRTKY++QIPLPPKIDPTVSLMTVEDKPDVTY++VGGAK++LEKLREVVELPLLHPERF+TLGIDPPKGVLL+GPPGTGKTLSARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFTMAR+KKACI+FFDE+DAIGGSRT GD D G DNEVQRTMLQIV+ELDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKV
Sbjct:   95 QVARCTKIIDEGNEDCKYVINVKQIAKFVVGLGEKVAPTDVEEGMRVGVDRTKYAIQIPLPPKIDPTVSLMTVEDKPDVTYDEVGGAKESLEKLREVVELPLLHPERFLTLGIDPPKGVLLYGPPGTGKTLSARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFTMARSKKACIIFFDEVDAIGGSRTSGDGDGGSDNEVQRTMLQIVTELDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKV 344
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BLAST of mRNA_H-elongata_contig109248.746.1 vs. uniprot
Match: A0A7S2CGH0_9STRA (Hypothetical protein n=3 Tax=Dictyochophyceae TaxID=39119 RepID=A0A7S2CGH0_9STRA)

HSP 1 Score: 456 bits (1173), Expect = 1.680e-158
Identity = 228/250 (91.20%), Postives = 243/250 (97.20%), Query Frame = 1 
Query:    1 QVARCTKIINAGQDDAKYVINVRQIAKFVVGLGEKVSPTDVEEGMRVGVDRTKYSVQIPLPPKIDPTVSLMTVEDKPDVTYEDVGGAKDALEKLREVVELPLLHPERFVTLGIDPPKGVLLFGPPGTGKTLSARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFTMARTKKACIVFFDEIDAIGGSRT-GGDDSGGDNEVQRTMLQIVSELDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKV 747
            QVARCTKII+A  ++AKYVINV+QIAKFVVGLGEKV+PTDVEEGMRVGVDRTKYS+QIPLPPKIDP+VSLMTVEDKPDVTY++VGGAKD+LEKLREVVELPLLHPERF TLGIDPPKGVLL+GPPGTGKTLSARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFTMAR+KKACI+FFDE+DAIGGSRT GGDD G DNEVQRTMLQIV+ELDGFD RGNIKVLMATNRPDTLDPALLRPGRLDRKV
Sbjct:   95 QVARCTKIIDAQSEEAKYVINVKQIAKFVVGLGEKVAPTDVEEGMRVGVDRTKYSIQIPLPPKIDPSVSLMTVEDKPDVTYDEVGGAKDSLEKLREVVELPLLHPERFYTLGIDPPKGVLLYGPPGTGKTLSARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFTMARSKKACIIFFDEVDAIGGSRTSGGDDGGSDNEVQRTMLQIVTELDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKV 344
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109248.746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJZ9_9PHAE4.050e-17198.80AAA domain-containing protein n=2 Tax=Ochrophyta T... [more]
A0A836CGS4_9STRA2.090e-16694.78P-loop containing nucleoside triphosphate hydrolas... [more]
A0A418CD62_9STRA1.480e-16189.06AAA domain-containing protein (Fragment) n=11 Tax=... [more]
A0A7S3JSE5_9STRA3.190e-16191.57Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A0X7YKY4_GLOUL3.410e-16187.8926S protease regulatory subunit 7 (Fragment) n=11 ... [more]
A0A6V1T8U9_HETAK1.250e-16091.57Hypothetical protein n=2 Tax=Chattonellaceae TaxID... [more]
M4BLV6_HYAAE4.540e-16088.28AAA domain-containing protein n=44 Tax=Oomycota Ta... [more]
A0A397CV15_9STRA3.250e-15989.06AAA domain-containing protein n=2 Tax=Aphanomyces ... [more]
F0YJ93_AURAN4.140e-15990.8026S proteasome ATPase subunit n=2 Tax=Pelagomonada... [more]
A0A7S2CGH0_9STRA1.680e-15891.20Hypothetical protein n=3 Tax=Dictyochophyceae TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109248contigH-elongata_contig109248:238..2124 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score465.3
Seed ortholog evalue1.9e-128
Seed eggNOG ortholog42099.EPrPV00000021779
KEGG koko:K03061
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
GOsGO:0000166,GO:0000502,GO:0000731,GO:0002020,GO:0002082,GO:0003674,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005783,GO:0005789,GO:0005811,GO:0005829,GO:0006139,GO:0006140,GO:0006163,GO:0006259,GO:0006281,GO:0006301,GO:0006302,GO:0006464,GO:0006486,GO:0006487,GO:0006508,GO:0006511,GO:0006515,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0006914,GO:0006919,GO:0006950,GO:0006974,GO:0007034,GO:0007041,GO:0008047,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008333,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009109,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009166,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0010918,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016192,GO:0016197,GO:0016236,GO:0016462,GO:0016504,GO:0016567,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017144,GO:0018130,GO:0018193,GO:0018196,GO:0018279,GO:0019058,GO:0019079,GO:0019219,GO:0019220,GO:0019222,GO:0019362,GO:0019438,GO:0019439,GO:0019538,GO:0019637,GO:0019674,GO:0019693,GO:0019899,GO:0019902,GO:0019903,GO:0019904,GO:0019941,GO:0019985,GO:0022411,GO:0022607,GO:0023051,GO:0023056,GO:0030111,GO:0030162,GO:0030163,GO:0030177,GO:0030234,GO:0030433,GO:0030554,GO:0030808,GO:0030810,GO:0030970,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031334,GO:0031399,GO:0031401,GO:0031593,GO:0031625,GO:0031974,GO:0031981,GO:0031984,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032446,GO:0032509,GO:0032510,GO:0032527,GO:0032553,GO:0032555,GO:0032559,GO:0032984,GO:0032991,GO:0033036,GO:0033554,GO:0034098,GO:0034214,GO:0034404,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034976,GO:0035639,GO:0035800,GO:0035861,GO:0035966,GO:0035967,GO:0036094,GO:0036211,GO:0036435,GO:0036503,GO:0036513,GO:0042175,GO:0042176,GO:0042221,GO:0042287,GO:0042288,GO:0042325,GO:0042327,GO:0042391,GO:0042726,GO:0042728,GO:0042802,GO:0042886,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043161,GO:0043167,GO:0043168,GO:0043170,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043280,GO:0043281,GO:0043412,GO:0043413,GO:0043457,GO:0043467,GO:0043531,GO:0043632,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044389,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045184,GO:0045732,GO:0045838,GO:0045862,GO:0045935,GO:0045937,GO:0045981,GO:0046034,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046907,GO:0048193,GO:0048471,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051186,GO:0051187,GO:0051234,GO:0051246,GO:0051247,GO:0051259,GO:0051260,GO:0051336,GO:0051345,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0051788,GO:0051881,GO:0052547,GO:0052548,GO:0055086,GO:0060255,GO:0060828,GO:0061134,GO:0061136,GO:0061857,GO:0061919,GO:0062012,GO:0062013,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070085,GO:0070647,GO:0070727,GO:0070841,GO:0070842,GO:0070887,GO:0071218,GO:0071310,GO:0071702,GO:0071704,GO:0071705,GO:0071712,GO:0071840,GO:0071897,GO:0071985,GO:0072387,GO:0072389,GO:0072521,GO:0072524,GO:0080090,GO:0090085,GO:0090263,GO:0090304,GO:0090734,GO:0097159,GO:0097352,GO:0097367,GO:0098772,GO:0098796,GO:0098827,GO:0140030,GO:1900371,GO:1900373,GO:1900542,GO:1900544,GO:1901135,GO:1901137,GO:1901265,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1901800,GO:1902494,GO:1903003,GO:1903004,GO:1903006,GO:1903007,GO:1903050,GO:1903052,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903513,GO:1903578,GO:1903580,GO:1903715,GO:1903862,GO:1904288,GO:1904949,GO:1905368,GO:1905369,GO:1990381,GO:1990730,GO:2000058,GO:2000060,GO:2000116,GO:2000152,GO:2000158,GO:2001056,GO:2001169,GO:2001171
EggNOG free text desc.26S protease regulatory subunit 7. Source PGD
EggNOG OGs1MEQI@121069,COG0554@1,KOG0729@2759
COG Functional cat.O
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03051
Hectar predicted targeting categoryother localisation
Exons4
Model size780
Cds size780
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109248.746.1prot_H-elongata_contig109248.746.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109248 238..2124 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929619.7234583-CDS-H-elongata_contig109248:237..4551622929619.7234583-CDS-H-elongata_contig109248:237..455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109248 238..455 -
1691679093.874174-CDS-H-elongata_contig109248:237..4551691679093.874174-CDS-H-elongata_contig109248:237..455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109248 238..455 -
1622929619.7383697-CDS-H-elongata_contig109248:703..10641622929619.7383697-CDS-H-elongata_contig109248:703..1064Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109248 704..1064 -
1691679093.8888798-CDS-H-elongata_contig109248:703..10641691679093.8888798-CDS-H-elongata_contig109248:703..1064Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109248 704..1064 -
1622929619.7517333-CDS-H-elongata_contig109248:1397..14931622929619.7517333-CDS-H-elongata_contig109248:1397..1493Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109248 1398..1493 -
1691679093.8963864-CDS-H-elongata_contig109248:1397..14931691679093.8963864-CDS-H-elongata_contig109248:1397..1493Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109248 1398..1493 -
1622929619.770567-CDS-H-elongata_contig109248:2019..21241622929619.770567-CDS-H-elongata_contig109248:2019..2124Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109248 2020..2124 -
1691679093.9041111-CDS-H-elongata_contig109248:2019..21241691679093.9041111-CDS-H-elongata_contig109248:2019..2124Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109248 2020..2124 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109248.746.1

>prot_H-elongata_contig109248.746.1 ID=prot_H-elongata_contig109248.746.1|Name=mRNA_H-elongata_contig109248.746.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=260bp
QVARCTKIINAGQDDAKYVINVRQIAKFVVGLGEKVSPTDVEEGMRVGVD
RTKYSVQIPLPPKIDPTVSLMTVEDKPDVTYEDVGGAKDALEKLREVVEL
PLLHPERFVTLGIDPPKGVLLFGPPGTGKTLSARAVANRTDACFIRVIGS
ELVQKYVGEGARMVRELFTMARTKKACIVFFDEIDAIGGSRTGGDDSGGD
NEVQRTMLQIVSELDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVR
ITASRLPTY*
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mRNA from alignment at H-elongata_contig109248:238..2124-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109248.746.1 ID=mRNA_H-elongata_contig109248.746.1|Name=mRNA_H-elongata_contig109248.746.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1887bp|location=Sequence derived from alignment at H-elongata_contig109248:238..2124- (Himanthalia elongata Himel1 dioecious)
CAGGTAGCGAGGTGCACCAAGATTATTAACGCTGGCCAGGATGACGCCAA
GTACGTGATCAACGTTAGGCAGATCGCAAAGTTCGTCGTGGGGCTAGGAG
AAAAGGTACAGCATACAGCTTTTAGGAGGTGGGGAAAGAACTTTGTGTCA
GGGTGCGATATTTGCCTTCACCGCCGCTCTGTTTAGACCAGCACCAGAGC
ATCTACTGGATTATCCGTGTCAGCCGCCCGACGGTTGACTCTTGGTCGTC
GTGGGCCGCGTTTTGTTTATTGTGTACTTCCTCATAATGAGGCGCATTTT
TCATCAGCCTGCCCGTAACTTGTTTTTAACGAGGCCCTAGTGTTGATCCT
TTAGAAACATATCCCGTATTCCCCGCTTATAATATCTCTCATCTATCGGA
TGTACAGCACGGTAGCGGGTAGCTTCCTCGACGTGTGGCGTTTCCCCCTT
CTTATGTACAGTGCTACTGGAAATATATATATATATATATATATATATAT
TTCCTACGCCTAGACTTTTTACTTCTACTCCACCCTTCCGCTGTCGTACG
TAGACTTGATTTCGGAGCGTCACACATTAATTTCCCTTACAGTCGTTGGT
ACATTCTCGTTCGTCCGTCGCGGGTGGTCAGGTGTCGCCCACCGATGTGG
AGGAAGGCATGCGCGTGGGTGTGGACCGCACCAAGTACTCGGTGCAGATC
CCGTTGCCGCCGAAGATTGATCCCACGGTGAGAGGGCAATTTTGTCGCCC
AAGCTCCAGTATTAGAAGAGACCCCCCCCCCTGTTGTGTTCTACTTTGTC
ATAGATGTTGAAGTAGAGTAATACGAGCGTTTTCTAGAAAAGGAGGGTGA
TTGTCCATTTCTAGCTGTTTGGATATTGTCACGGGTGTTTATAATCGTGG
CGGTGGCGGTGGTGAAAAAGTTGGAGTATACGTCGCTCAAGATCTGTGGC
GAAAAGGCATTGTATGTTTGGTTTGGGTGTAAACTCCCGGTCCCCCCCCT
CCCTCCCTTCTCTCCGCCTTCCGTCACAACAACGACTATTTTTTCCACTG
CGTGACCCAGGTGAGCCTGATGACTGTAGAGGACAAGCCAGACGTCACTT
ACGAGGACGTGGGTGGAGCCAAAGATGCGCTGGAAAAGCTCCGAGAAGTG
GTGGAACTCCCGCTACTCCATCCGGAACGCTTTGTGACTCTTGGCATCGA
TCCCCCCAAGGGTGTCCTGCTTTTCGGGCCACCCGGGACAGGCAAGACGC
TGTCGGCGCGAGCTGTCGCGAACCGGACGGACGCGTGCTTTATCCGAGTG
ATTGGGAGCGAGCTGGTTCAAAAGTACGTGGGGGAAGGGGCTCGCATGGT
GCGGGAGCTCTTCACCATGGCGAGAACAAAGAAGGCGTGCATCGTATTCT
TCGACGAGATCGACGCTATCGGTGAGAGGCACTGTACTTTACTGTCACGC
GTTAGACTAGCATAAGCCGCCCTAGACGCTTCTGATCTGAAATCAATTCT
GACGCCGCTGGAATGTTTGCGCAATATAGTCTTGTATCTCTGTCTGCTGA
GATTCGAAATCCACACTTTTTTTTTTTGTTTACTTCCCAGCGCCATTGCC
CAATCACCAATCACCATCTTCCTTCTCTCTCATGAATATTTTTTCCCCCC
TGGAAACGTCTTCGTCCAGGTGGAAGCCGTACGGGGGGAGACGACAGCGG
GGGCGACAACGAGGTGCAGCGCACCATGCTCCAGATTGTGTCGGAGCTTG
ACGGATTCGACCCCAGGGGAAACATTAAGGTGCTCATGGCGACCAACCGT
CCGGACACGCTGGACCCTGCCTTGCTGCGCCCGGGGCGTTTAGATCGAAA
GGTGCGCATCACGGCTTCGAGGCTTCCGACTTATTAA
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Coding sequence (CDS) from alignment at H-elongata_contig109248:238..2124-

>mRNA_H-elongata_contig109248.746.1 ID=mRNA_H-elongata_contig109248.746.1|Name=mRNA_H-elongata_contig109248.746.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1560bp|location=Sequence derived from alignment at H-elongata_contig109248:238..2124- (Himanthalia elongata Himel1 dioecious)
CAGGTAGCGAGGTGCACCAAGATTATTAACGCTGGCCAGGATGACGCCAA
GTACGTGATCAACGTTAGGCAGATCGCAAAGTTCGTCGTGGGGCTAGGAG
AAAAGCAGGTAGCGAGGTGCACCAAGATTATTAACGCTGGCCAGGATGAC
GCCAAGTACGTGATCAACGTTAGGCAGATCGCAAAGTTCGTCGTGGGGCT
AGGAGAAAAGGTGTCGCCCACCGATGTGGAGGAAGGCATGCGCGTGGGTG
TGGACCGCACCAAGTACTCGGTGCAGATCCCGTTGCCGCCGAAGATTGAT
CCCACGGTGTCGCCCACCGATGTGGAGGAAGGCATGCGCGTGGGTGTGGA
CCGCACCAAGTACTCGGTGCAGATCCCGTTGCCGCCGAAGATTGATCCCA
CGGTGAGCCTGATGACTGTAGAGGACAAGCCAGACGTCACTTACGAGGAC
GTGGGTGGAGCCAAAGATGCGCTGGAAAAGCTCCGAGAAGTGGTGGAACT
CCCGCTACTCCATCCGGAACGCTTTGTGACTCTTGGCATCGATCCCCCCA
AGGGTGTCCTGCTTTTCGGGCCACCCGGGACAGGCAAGACGCTGTCGGCG
CGAGCTGTCGCGAACCGGACGGACGCGTGCTTTATCCGAGTGATTGGGAG
CGAGCTGGTTCAAAAGTACGTGGGGGAAGGGGCTCGCATGGTGCGGGAGC
TCTTCACCATGGCGAGAACAAAGAAGGCGTGCATCGTATTCTTCGACGAG
ATCGACGCTATCGGTGAGCCTGATGACTGTAGAGGACAAGCCAGACGTCA
CTTACGAGGACGTGGGTGGAGCCAAAGATGCGCTGGAAAAGCTCCGAGAA
GTGGTGGAACTCCCGCTACTCCATCCGGAACGCTTTGTGACTCTTGGCAT
CGATCCCCCCAAGGGTGTCCTGCTTTTCGGGCCACCCGGGACAGGCAAGA
CGCTGTCGGCGCGAGCTGTCGCGAACCGGACGGACGCGTGCTTTATCCGA
GTGATTGGGAGCGAGCTGGTTCAAAAGTACGTGGGGGAAGGGGCTCGCAT
GGTGCGGGAGCTCTTCACCATGGCGAGAACAAAGAAGGCGTGCATCGTAT
TCTTCGACGAGATCGACGCTATCGGTGGAAGCCGTACGGGGGGAGACGAC
AGCGGGGGCGACAACGAGGTGCAGCGCACCATGCTCCAGATTGTGTCGGA
GCTTGACGGATTCGACCCCAGGGGAAACATTAAGGTGCTCATGGCGACCA
ACCGTCCGGACACGCTGGACCCTGCCTTGCTGCGCCCGGGGCGTTTAGAT
CGAAAGGTGCGCATCACGGCTTCGAGGCTTCCGACTTATTAAGTGGAAGC
CGTACGGGGGGAGACGACAGCGGGGGCGACAACGAGGTGCAGCGCACCAT
GCTCCAGATTGTGTCGGAGCTTGACGGATTCGACCCCAGGGGAAACATTA
AGGTGCTCATGGCGACCAACCGTCCGGACACGCTGGACCCTGCCTTGCTG
CGCCCGGGGCGTTTAGATCGAAAGGTGCGCATCACGGCTTCGAGGCTTCC
GACTTATTAA
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