mRNA_H-elongata_contig109246.745.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109246.745.1
Unique NamemRNA_H-elongata_contig109246.745.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig109246.745.1 vs. uniprot
Match: D7G5K9_ECTSI (HA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5K9_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.220e-11
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    7 QGSLLAPSSFIVPEEAPWPLCCQGMRLGTKVAGVRNQ 117
            +G LL P+SF+VPE  PWPL CQGMRLG KVAGVRNQ
Sbjct:  263 EGCLLVPTSFVVPETEPWPLSCQGMRLGAKVAGVRNQ 299
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109246.745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5K9_ECTSI1.220e-1175.68HA domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109246contigH-elongata_contig109246:1513..1629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue3.8e-09
Seed eggNOG ortholog2880.D7G5K9
EggNOG free text desc.Helicase associated domain
EggNOG OGs2B9HJ@1,2S0TY@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size117
Cds size117
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929619.6768389-CDS-H-elongata_contig109246:1512..16291622929619.6768389-CDS-H-elongata_contig109246:1512..1629Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109246 1513..1629 +
1691679093.8588576-CDS-H-elongata_contig109246:1512..16291691679093.8588576-CDS-H-elongata_contig109246:1512..1629Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109246 1513..1629 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109246.745.1prot_H-elongata_contig109246.745.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109246 1513..1629 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109246.745.1

>prot_H-elongata_contig109246.745.1 ID=prot_H-elongata_contig109246.745.1|Name=mRNA_H-elongata_contig109246.745.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=39bp
EQQGSLLAPSSFIVPEEAPWPLCCQGMRLGTKVAGVRNQ
back to top

mRNA from alignment at H-elongata_contig109246:1513..1629+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109246.745.1 ID=mRNA_H-elongata_contig109246.745.1|Name=mRNA_H-elongata_contig109246.745.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=117bp|location=Sequence derived from alignment at H-elongata_contig109246:1513..1629+ (Himanthalia elongata Himel1 dioecious)
GAACAACAGGGATCGTTACTCGCGCCGAGCTCTTTTATCGTCCCCGAGGA
AGCCCCCTGGCCGCTGTGCTGCCAGGGAATGCGGCTGGGGACCAAAGTGG
CCGGAGTAAGGAACCAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig109246:1513..1629+

>mRNA_H-elongata_contig109246.745.1 ID=mRNA_H-elongata_contig109246.745.1|Name=mRNA_H-elongata_contig109246.745.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=234bp|location=Sequence derived from alignment at H-elongata_contig109246:1513..1629+ (Himanthalia elongata Himel1 dioecious)
GAACAACAGGGATCGTTACTCGCGCCGAGCTCTTTTATCGTCCCCGAGGA
AGCCCCCTGGCCGCTGTGCTGCCAGGGAATGCGGCTGGGGACCAAAGTGG
CCGGAGTAAGGAACCAGGAACAACAGGGATCGTTACTCGCGCCGAGCTCT
TTTATCGTCCCCGAGGAAGCCCCCTGGCCGCTGTGCTGCCAGGGAATGCG
GCTGGGGACCAAAGTGGCCGGAGTAAGGAACCAG
back to top