mRNA_H-elongata_contig109166.744.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109166.744.1
Unique NamemRNA_H-elongata_contig109166.744.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig109166.744.1 vs. uniprot
Match: D7G111_ECTSI (Glycine/D-amino acid oxidase-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G111_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 1.410e-48
Identity = 82/100 (82.00%), Postives = 88/100 (88.00%), Query Frame = 1
Query:    1 LLRADAGWTALRNMKTGKDAGPTPAFVAEDRMPLGDENLPAFDVLVCGGTLGIFMATALQMRGFKVGVVERGPLRGREQEWNISEAELEEMVEVGVLSEQ 300
            LLRADAGWTALRNMKTG DAGP P +V E   PLG EN PAFDV+VCGGTLGIF+ATALQMRGF+VGVVERGPL GREQEWNISEAELEEMVE  VLS++
Sbjct:   22 LLRADAGWTALRNMKTGDDAGPAPTYVTESDTPLGAENPPAFDVVVCGGTLGIFVATALQMRGFRVGVVERGPLLGREQEWNISEAELEEMVEAEVLSKE 121          
BLAST of mRNA_H-elongata_contig109166.744.1 vs. uniprot
Match: A0A6H5L433_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L433_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 3.770e-46
Identity = 82/100 (82.00%), Postives = 88/100 (88.00%), Query Frame = 1
Query:    1 LLRADAGWTALRNMKTGKDAGPTPAFVAEDRMPLGDENLPAFDVLVCGGTLGIFMATALQMRGFKVGVVERGPLRGREQEWNISEAELEEMVEVGVLSEQ 300
            LLRADAGWTALRNMKTG DAGP P +V E   PLG EN PAFDV+VCGGTLGIF+ATALQMRGF+VGVVERGPL GREQEWNISEAELEEMVE  VLS++
Sbjct:  120 LLRADAGWTALRNMKTGDDAGPAPTYVTESDTPLGAENPPAFDVVVCGGTLGIFVATALQMRGFRVGVVERGPLLGREQEWNISEAELEEMVEAEVLSKE 219          
BLAST of mRNA_H-elongata_contig109166.744.1 vs. uniprot
Match: A0A7S1J7L3_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1J7L3_9EUGL)

HSP 1 Score: 119 bits (299), Expect = 3.470e-30
Identity = 58/100 (58.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query:    1 LLRADAGWTALRNMKTGKDAGPTPAFVAEDRMPLGDENLPAFDVLVCGGTLGIFMATALQMRGFKVGVVERGPLRGREQEWNISEAELEEMVEVGVLSEQ 300
            L RAD  W  LR MKTG DAGP P FV E   PLG    P +DV+VCGGTLGIF+A  LQ RG +V VVE+G LRGREQ+WN+S +E++E+VE+G ++++
Sbjct:  156 LKRADGVWKGLREMKTGADAGPAPEFVKEATDPLGVP--PTYDVVVCGGTLGIFVACVLQKRGLRVAVVEQGILRGREQDWNVSRSEMQELVELGAITQE 253          
BLAST of mRNA_H-elongata_contig109166.744.1 vs. uniprot
Match: A0A1Y1HH77_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HH77_KLENI)

HSP 1 Score: 117 bits (294), Expect = 1.100e-28
Identity = 58/106 (54.72%), Postives = 76/106 (71.70%), Query Frame = 1
Query:    1 LLRADAGWTALRNMKTGKDAGPTPAFVAEDRMPL------GDENLPAFDVLVCGGTLGIFMATALQMRGFKVGVVERGPLRGREQEWNISEAELEEMVEVGVLSEQ 300
            L RAD  W  +R MKTG++AGP P  V E R         G ENL  +DV+VCGGTLG+F+ATALQ+RG +V +VERG L GR QEWNIS+ E++ +VE+GVL+++
Sbjct:   76 LKRADQNWARIRTMKTGREAGPAPETVKERRGSWRDVGTSGQENLGVYDVVVCGGTLGVFLATALQLRGKRVAIVERGVLMGRAQEWNISKQEMQSLVEMGVLTQE 181          
BLAST of mRNA_H-elongata_contig109166.744.1 vs. uniprot
Match: A0A7S4DCS5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCS5_HETAK)

HSP 1 Score: 112 bits (281), Expect = 6.490e-27
Identity = 58/100 (58.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:    1 LLRADAGWTALRNMKTGKDAGPTPAFVAEDRMPLGDENLPAFDVLVCGGTLGIFMATALQMRGFKVGVVERGPLRGREQEWNISEAELEEMVEVGVLSEQ 300
            LLR DA W A+RNMK G  AGP P FV E R          +DV+V GGTLG+F A ALQ+ G KV VVERGPLRGR Q+WNI+  EL  +V  GVLSE+
Sbjct:   22 LLRMDATWKAIRNMKEGAAAGPAPVFVRERRGEAWGGGPTEYDVVVAGGTLGVFQACALQLAGLKVAVVERGPLRGRNQDWNIARKELWGLVRAGVLSEE 121          
BLAST of mRNA_H-elongata_contig109166.744.1 vs. uniprot
Match: A0A7S0KT21_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KT21_MICPS)

HSP 1 Score: 112 bits (281), Expect = 7.500e-27
Identity = 58/99 (58.59%), Postives = 70/99 (70.71%), Query Frame = 1
Query:    1 LLRADAGWTALRNMKTGKDAGPTPAFVAEDRMPLGDENLPAFDVLVCGGTLGIFMATALQMRGFKVGVVERGPLRGREQEWNISEAELEEMVEVGVLSE 297
            L R D  W ++RNM  G  AGP P FV E  + L D N   +DV VCGGTLGI +ATALQ RG +V V+ERGPLRGR+QEWNIS  ELE +V +GVL++
Sbjct:   86 LRRVDGVWRSIRNMPEGDAAGPAPVFVTESSVRL-DTNRCDYDVAVCGGTLGILVATALQARGQRVVVIERGPLRGRDQEWNISRPELESLVALGVLTQ 183          
BLAST of mRNA_H-elongata_contig109166.744.1 vs. uniprot
Match: A0A2V0NPV1_9CHLO (Glycine D-amino acid oxidase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NPV1_9CHLO)

HSP 1 Score: 112 bits (281), Expect = 8.350e-27
Identity = 57/99 (57.58%), Postives = 70/99 (70.71%), Query Frame = 1
Query:    1 LLRADAGWTALRNMKTGKDAGPTPAFVAEDRMPLGD-ENLPAFDVLVCGGTLGIFMATALQMRGFKVGVVERGPLRGREQEWNISEAELEEMVEVGVLS 294
            LL ADA W A+R+ + G +A P P F+ E R PLGD     AFDV+VCGGTLGIF+A AL  RG +V V+ER  LRGR QEWNIS  EL E+ E+G+L+
Sbjct: 1755 LLAADAAWRAVRSARPGDEAAPRPRFLTESRTPLGDGAAAAAFDVVVCGGTLGIFVAAALAARGHRVAVIERAELRGRAQEWNISRKELAELREMGLLT 1853          
BLAST of mRNA_H-elongata_contig109166.744.1 vs. uniprot
Match: A0A250WS10_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WS10_9CHLO)

HSP 1 Score: 112 bits (279), Expect = 1.320e-26
Identity = 56/97 (57.73%), Postives = 70/97 (72.16%), Query Frame = 1
Query:   10 ADAGWTALRNMKTGKDAGPTPAFVAEDRMPLGDENLPAFDVLVCGGTLGIFMATALQMRGFKVGVVERGPLRGREQEWNISEAELEEMVEVGVLSEQ 300
            AD  W+ LRN+  G   GP P FV + + P G  + P FDV+VCGGTLGIF+ATAL  RG +V V+ERGPLRGR QEWNIS+ E+EE+ +  VLSE+
Sbjct:   89 ADRAWSRLRNLPVGAAVGPAPRFVQQYQGPPGVPS-PEFDVVVCGGTLGIFVATALAARGLRVAVLERGPLRGRSQEWNISKKEMEELSKFSVLSEE 184          
BLAST of mRNA_H-elongata_contig109166.744.1 vs. uniprot
Match: A0A2P6TLF7_CHLSO (Fad dependent oxidoreductase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TLF7_CHLSO)

HSP 1 Score: 110 bits (274), Expect = 6.670e-26
Identity = 59/100 (59.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query:    1 LLRADAGWTALRNMKTGKDAGPTPAFVAEDRMPLGDENLPAFDVLVCGGTLGIFMATALQMRGFKVGVVERGPLRGREQEWNISEAELEEMVEVGVLSEQ 300
            L RADA W   R+++T    GP P FV E    L  E  P +DV VCGGTLGIF+A +LQ+RG +V VVERGPL GR QEWNIS+ E+EE+VE+GVLS+Q
Sbjct:  105 LQRADAAW---RDLRTRMVWGPRPQFVRETGQKL--EAAPEYDVAVCGGTLGIFLACSLQLRGLRVAVVERGPLAGRAQEWNISKKEVEELVELGVLSQQ 199          
BLAST of mRNA_H-elongata_contig109166.744.1 vs. uniprot
Match: A0A5J4Y8J5_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y8J5_9CHLO)

HSP 1 Score: 108 bits (271), Expect = 1.550e-25
Identity = 54/98 (55.10%), Postives = 68/98 (69.39%), Query Frame = 1
Query:    1 LLRADAGWTALRNMKTGKDAGPTPAFVAEDRMPLGDENLPAFDVLVCGGTLGIFMATALQMRGFKVGVVERGPLRGREQEWNISEAELEEMVEVGVLS 294
            L  ADA W   +  K GK  GP P FV E + PL       +DV++CGGTLGIF+A +LQ++G KV VVERGPL+GR+QEWNIS  EL+E+V  G+LS
Sbjct:   98 LQGADAAWAKAKAQKAGKPQGPPPNFVQEVQTPLSQS--VQYDVIMCGGTLGIFLACSLQLKGLKVAVVERGPLQGRQQEWNISRKELQELVHEGLLS 193          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109166.744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G111_ECTSI1.410e-4882.00Glycine/D-amino acid oxidase-like protein n=1 Tax=... [more]
A0A6H5L433_9PHAE3.770e-4682.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1J7L3_9EUGL3.470e-3058.00Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A1Y1HH77_KLENI1.100e-2854.72Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A7S4DCS5_HETAK6.490e-2758.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0KT21_MICPS7.500e-2758.59Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A2V0NPV1_9CHLO8.350e-2757.58Glycine D-amino acid oxidase n=1 Tax=Raphidocelis ... [more]
A0A250WS10_9CHLO1.320e-2657.73Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A2P6TLF7_CHLSO6.670e-2659.00Fad dependent oxidoreductase n=1 Tax=Chlorella sor... [more]
A0A5J4Y8J5_9CHLO1.550e-2555.10Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109166contigH-elongata_contig109166:196..1250 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.0
Seed ortholog evalue9.3e-39
Seed eggNOG ortholog2880.D7G111
EggNOG OGs28PI8@1,2QW6A@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionglycine/D-amino acid oxidase-like protein
Ec32 orthologEc-22_001580.1
Exons2
Model size312
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929619.6062007-CDS-H-elongata_contig109166:195..3221622929619.6062007-CDS-H-elongata_contig109166:195..322Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109166 196..322 -
1691679093.8283613-CDS-H-elongata_contig109166:195..3221691679093.8283613-CDS-H-elongata_contig109166:195..322Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109166 196..322 -
1622929619.6233218-CDS-H-elongata_contig109166:1065..12501622929619.6233218-CDS-H-elongata_contig109166:1065..1250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109166 1066..1250 -
1691679093.8481069-CDS-H-elongata_contig109166:1065..12501691679093.8481069-CDS-H-elongata_contig109166:1065..1250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109166 1066..1250 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109166.744.1prot_H-elongata_contig109166.744.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109166 196..1250 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109166.744.1

>prot_H-elongata_contig109166.744.1 ID=prot_H-elongata_contig109166.744.1|Name=mRNA_H-elongata_contig109166.744.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
LLRADAGWTALRNMKTGKDAGPTPAFVAEDRMPLGDENLPAFDVLVCGGT
LGIFMATALQMRGFKVGVVERGPLRGREQEWNISEAELEEMVEVGVLSEQ
ASR*
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mRNA from alignment at H-elongata_contig109166:196..1250-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109166.744.1 ID=mRNA_H-elongata_contig109166.744.1|Name=mRNA_H-elongata_contig109166.744.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1055bp|location=Sequence derived from alignment at H-elongata_contig109166:196..1250- (Himanthalia elongata Himel1 dioecious)
TTGCTCAGGGCGGACGCGGGATGGACGGCGTTGCGGAACATGAAAACGGG GAAAGATGCCGGTCCGACTCCTGCCTTCGTGGCGGAGGACAGAATGCCTC TTGGAGACGAAAACCTGCCCGCCTTTGACGTTCTCGTGTGCGGTGGTACC CTCGGCATCTTCATGGCCACGGCGCTGCAGATGAGGTATGTGTGTGTGTG TATTTGTGTGTTTGTTTATCTGTGTCACGCACGAGTCCCGAATTGTTTTT TGCGATCCAATCTCCCGGAAGTTTCTGGAACATTTCTCGCGTGCACTCGA AAGAGGAGGCTCAACACTCGTGGATAAAAACTCCGTCCATGAAACGACAA TGCGGAATGGAAGATCTTCACGGTTGGTTCTAGGGATCGGTCACGGTTGG TTCTAGGGATCGGCCCCGATCTTAGGCTTCCGTCGAAACCAGGGAGAAAT ACTCGTCGTATGGGGGAGGGCAGGGGGGTTGCTTTGGCGAGAGAGAACCA TAACGCCTTCTTTGATAACCAAGGGGGTTCCTCTTTTGTGGTGCTGGCGA CGAGATAAAGAGATGAACGCGGACAGCCCCACCTTTATTCCGGAGGTTTC CGTGGGATGCAGAGCAATAATTTATCTAGAACGGAGTGAAAATAAGTATA TATATATATATATATATATATGCAGTAATAATTGACCCAAGCCCCAGAGG AGGTTAATGAAAACACATTAGATTCTCTAGGGTAGCCATTTTTCTGGGCG CCTTCTGAGAGATACATTCCGATGGTGTTTCAGCGCGTTACGAGATACCG CTTCGAAGAAAGTCCTTTCAGGAAATCGAGATCCCATCATCATCTCCTTA TGACTAATGTGTGCACAAAATGGTATCGCGAGCGTGTCTGTTTTCTTGTC CGTCTCTCTCTTGATGTCTTGCCCAAAGGGGTTTCAAGGTGGGCGTTGTG GAGCGGGGGCCTCTGAGGGGCCGGGAGCAGGAGTGGAACATCAGCGAGGC CGAACTGGAGGAGATGGTGGAGGTTGGGGTTCTCAGCGAACAGGCGAGTC GGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig109166:196..1250-

>mRNA_H-elongata_contig109166.744.1 ID=mRNA_H-elongata_contig109166.744.1|Name=mRNA_H-elongata_contig109166.744.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig109166:196..1250- (Himanthalia elongata Himel1 dioecious)
TTGCTCAGGGCGGACGCGGGATGGACGGCGTTGCGGAACATGAAAACGGG
GAAAGATGCCGGTCCGACTCCTGCCTTCGTGGCGGAGGACAGAATGCCTC
TTGGAGACGAAAACCTGCCCGCCTTTGACGTTCTCGTGTGCGGTGGTACC
CTCGGCATCTTCATGGCCACGGCGCTGCAGATGAGTTGCTCAGGGCGGAC
GCGGGATGGACGGCGTTGCGGAACATGAAAACGGGGAAAGATGCCGGTCC
GACTCCTGCCTTCGTGGCGGAGGACAGAATGCCTCTTGGAGACGAAAACC
TGCCCGCCTTTGACGTTCTCGTGTGCGGTGGTACCCTCGGCATCTTCATG
GCCACGGCGCTGCAGATGAGGGGTTTCAAGGTGGGCGTTGTGGAGCGGGG
GCCTCTGAGGGGCCGGGAGCAGGAGTGGAACATCAGCGAGGCCGAACTGG
AGGAGATGGTGGAGGTTGGGGTTCTCAGCGAACAGGCGAGTCGGTAGGGG
TTTCAAGGTGGGCGTTGTGGAGCGGGGGCCTCTGAGGGGCCGGGAGCAGG
AGTGGAACATCAGCGAGGCCGAACTGGAGGAGATGGTGGAGGTTGGGGTT
CTCAGCGAACAGGCGAGTCGGTAG
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