mRNA_H-elongata_contig109145.741.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109145.741.1
Unique NamemRNA_H-elongata_contig109145.741.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig109145.741.1 vs. uniprot
Match: A0A3R8U0R2_9GAMM (Uncharacterized protein n=6 Tax=Pseudoxanthomonas TaxID=83618 RepID=A0A3R8U0R2_9GAMM)

HSP 1 Score: 56.6 bits (135), Expect = 2.230e-7
Identity = 27/48 (56.25%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:    4 VLLENGADPNARDKTGRSPLHRAARWGSPACGLLLLDAGADIEARDEE 147
             LL NGADP ARD  G SPLH AAR   P    LL DAGA++EA + +
Sbjct:  325 TLLANGADPRARDAEGNSPLHHAARSTDPGVAALLRDAGAELEALNND 372
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BLAST of mRNA_H-elongata_contig109145.741.1 vs. uniprot
Match: A0A5D6XM11_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XM11_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.000e-6
Identity = 23/47 (48.94%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 QVLLENGADPNARDKTGRSPLHRAARWGSPACGLLLLDAGADIEARD 141
            Q+L+  GADP+A D++G +PLH AA WG+  C +L+L+AGA + A++
Sbjct:   57 QLLVGRGADPDAVDESGNTPLHLAAGWGNLRCCVLMLEAGARVTAKN 103
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BLAST of mRNA_H-elongata_contig109145.741.1 vs. uniprot
Match: A0A3Q2DH93_CYPVA (Cyclin dependent kinase inhibitor 2B n=2 Tax=Cyprinodon TaxID=28741 RepID=A0A3Q2DH93_CYPVA)

HSP 1 Score: 52.4 bits (124), Expect = 1.180e-6
Identity = 27/49 (55.10%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    1 QVLLENGADPNARDK-TGRSPLHRAARWGSPACGLLLLDAGADIEARDE 144
            Q+LLE+GADPN  D  TG +PLH AAR G      LL++AGA+++ARD+
Sbjct:   52 QLLLEHGADPNVADSSTGSTPLHDAARTGFLDTVRLLVEAGANLQARDK 100
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BLAST of mRNA_H-elongata_contig109145.741.1 vs. uniprot
Match: A0A151MCF4_ALLMI (Ankyrin repeat domain-containing protein 53 n=1 Tax=Alligator mississippiensis TaxID=8496 RepID=A0A151MCF4_ALLMI)

HSP 1 Score: 52.8 bits (125), Expect = 2.200e-6
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    1 QVLLENGADPNARDKTGRSPLHRAARWGSPACGLLLLDAGADIEARDEE 147
            Q L+  GAD N +++TG SPLH+AA  G   C + L++AGADI A+D E
Sbjct:  120 QYLIGKGADVNVQNQTGASPLHKAASEGRLPCIIALVEAGADIFAKDAE 168
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BLAST of mRNA_H-elongata_contig109145.741.1 vs. uniprot
Match: A0A087Y1Y3_POEFO (Cyclin-dependent kinase 4 inhibitor B-like n=5 Tax=Poecilia TaxID=8080 RepID=A0A087Y1Y3_POEFO)

HSP 1 Score: 51.6 bits (122), Expect = 2.340e-6
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 QVLLENGADPNARDK-TGRSPLHRAARWGSPACGLLLLDAGADIEARDEE 147
            Q+LL +GADPN  D+ TG +PLH AAR G      LL++AGAD +ARD++
Sbjct:   52 QLLLTSGADPNVADRSTGATPLHDAARTGFLDTVKLLVEAGADRQARDKD 101
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BLAST of mRNA_H-elongata_contig109145.741.1 vs. uniprot
Match: A0A3B3BJG7_ORYME (Cyclin-dependent kinase 4 inhibitor B-like n=2 Tax=Oryzias melastigma TaxID=30732 RepID=A0A3B3BJG7_ORYME)

HSP 1 Score: 51.2 bits (121), Expect = 3.620e-6
Identity = 28/49 (57.14%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    1 QVLLENGADPNARDKT-GRSPLHRAARWGSPACGLLLLDAGADIEARDE 144
            QVLL +GADPN  D+T G +PLH AAR G      LL+ AGAD +ARD+
Sbjct:   52 QVLLRHGADPNVADQTTGATPLHDAARTGFLDTVRLLVQAGADPQARDK 100
[Close]
BLAST of mRNA_H-elongata_contig109145.741.1 vs. uniprot
Match: A0A6A6E4C4_9PEZI (Ankyrin n=1 Tax=Zopfia rhizophila CBS 207.26 TaxID=1314779 RepID=A0A6A6E4C4_9PEZI)

HSP 1 Score: 53.1 bits (126), Expect = 3.660e-6
Identity = 26/47 (55.32%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:    4 VLLENGADPNARDKTGRSPLHRAARWGSPACGLLLLDAGADIEARDE 144
            VLL NGADPNA    G SPL  AA W +P C   LLDAGA++ + D+
Sbjct:  487 VLLRNGADPNAVCIRGISPLGYAAAWSTPKCCKKLLDAGANVRSMDD 533
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BLAST of mRNA_H-elongata_contig109145.741.1 vs. uniprot
Match: A0A3E0PEY2_9BACT (Ankyrin repeat domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3E0PEY2_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 4.720e-6
Identity = 27/61 (44.26%), Postives = 36/61 (59.02%), Query Frame = 1 
Query:    1 QVLLENGADPNARDKTGR--------------SPLHRAARWGSPACGLLLLDAGADIEARD 141
            +VLL NGA+PNA+ K                 +PLHRAA +G P    +L+DAGA++EARD
Sbjct:  116 EVLLANGAEPNAKTKKNEESGSFMRDVRTRAETPLHRAAAFGGPGAIRMLIDAGAELEARD 176
[Close]
BLAST of mRNA_H-elongata_contig109145.741.1 vs. uniprot
Match: A0A3M2SNV7_9HYPO (Uncharacterized protein n=1 Tax=Fusarium kuroshium TaxID=2010991 RepID=A0A3M2SNV7_9HYPO)

HSP 1 Score: 52.8 bits (125), Expect = 4.910e-6
Identity = 24/46 (52.17%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 QVLLENGADPNARDKTGRSPLHRAARWGSPACGLLLLDAGADIEAR 138
            ++LLENGADPN R++ GR+ LH A + G  +   +L+D GADI+AR
Sbjct:  428 ELLLENGADPNRREQHGRTALHIAVKHGYSSIVTMLVDHGADIDAR 473
[Close]
BLAST of mRNA_H-elongata_contig109145.741.1 vs. uniprot
Match: A0A428PZV3_9HYPO (Uncharacterized protein n=1 Tax=Fusarium floridanum TaxID=1325733 RepID=A0A428PZV3_9HYPO)

HSP 1 Score: 52.8 bits (125), Expect = 4.960e-6
Identity = 24/46 (52.17%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 QVLLENGADPNARDKTGRSPLHRAARWGSPACGLLLLDAGADIEAR 138
            ++LLENGADPN R++ GR+ LH A + G  +   +L+D GADI+AR
Sbjct:  525 ELLLENGADPNRREQHGRTALHIAVKHGYSSIVTMLVDHGADIDAR 570
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109145.741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3R8U0R2_9GAMM2.230e-756.25Uncharacterized protein n=6 Tax=Pseudoxanthomonas ... [more]
A0A5D6XM11_9STRA1.000e-648.94Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A3Q2DH93_CYPVA1.180e-655.10Cyclin dependent kinase inhibitor 2B n=2 Tax=Cypri... [more]
A0A151MCF4_ALLMI2.200e-651.02Ankyrin repeat domain-containing protein 53 n=1 Ta... [more]
A0A087Y1Y3_POEFO2.340e-654.00Cyclin-dependent kinase 4 inhibitor B-like n=5 Tax... [more]
A0A3B3BJG7_ORYME3.620e-657.14Cyclin-dependent kinase 4 inhibitor B-like n=2 Tax... [more]
A0A6A6E4C4_9PEZI3.660e-655.32Ankyrin n=1 Tax=Zopfia rhizophila CBS 207.26 TaxID... [more]
A0A3E0PEY2_9BACT4.720e-644.26Ankyrin repeat domain-containing protein n=1 Tax=A... [more]
A0A3M2SNV7_9HYPO4.910e-652.17Uncharacterized protein n=1 Tax=Fusarium kuroshium... [more]
A0A428PZV3_9HYPO4.960e-652.17Uncharacterized protein n=1 Tax=Fusarium floridanu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109145contigH-elongata_contig109145:267..1411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-07_003720.1
Exons2
Model size258
Cds size258
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929619.2656648-CDS-H-elongata_contig109145:266..3921622929619.2656648-CDS-H-elongata_contig109145:266..392Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109145 267..392 -
1691679093.6671991-CDS-H-elongata_contig109145:266..3921691679093.6671991-CDS-H-elongata_contig109145:266..392Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109145 267..392 -
1622929619.2866397-CDS-H-elongata_contig109145:1279..14111622929619.2866397-CDS-H-elongata_contig109145:1279..1411Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109145 1280..1411 -
1691679093.676102-CDS-H-elongata_contig109145:1279..14111691679093.676102-CDS-H-elongata_contig109145:1279..1411Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109145 1280..1411 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109145.741.1prot_H-elongata_contig109145.741.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109145 267..1411 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109145.741.1

>prot_H-elongata_contig109145.741.1 ID=prot_H-elongata_contig109145.741.1|Name=mRNA_H-elongata_contig109145.741.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
QVLLENGADPNARDKTGRSPLHRAARWGSPACGLLLLDAGADIEARDEEM
ARTPLHYASRSGGVVTTLMLLDNGANVNAKTGSYL*
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mRNA from alignment at H-elongata_contig109145:267..1411-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109145.741.1 ID=mRNA_H-elongata_contig109145.741.1|Name=mRNA_H-elongata_contig109145.741.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1145bp|location=Sequence derived from alignment at H-elongata_contig109145:267..1411- (Himanthalia elongata Himel1 dioecious)
CAGGTTTTGCTAGAGAATGGGGCCGATCCGAATGCGCGGGACAAGACGGG
GAGAAGCCCGTTACATCGCGCGGCTCGTTGGGGATCTCCGGCGTGTGGCC
TTCTCCTGCTCGACGCTGGAGCAGATATTGAGGTGAGGCATTGAGGTAAG
ACATAGAGAGGTGAGACATTGAGGCGAGGCAGCCACCAAAGCAAGTCGCG
CAGCCCCCATGTTATTGTTTTTTCGTTTTACATGTTTTTATTTCCCCCGT
CATATTTTGGATCTGTTTTTTATTTTGCTTCGTGTTTTTGTGTCGCGCAA
CCACCCTCCGCAGCCGTCAAGCTACAAGCGCTAGCGTTATTTGTCTAAGC
AGTATTGCGCAATAACAACTTACTTGCCTTGGCTTCCTGTCCCTCTTTCG
AGATGGAGGCAAAACGCTCAACTGCTTGCTTTTCAGAAACGCCTCTTCTC
ACCCACCGTATACACGGGGACAATCATTCCCTCCCAACTCCTTTTCCTCA
GCACGCAGGGTACGCAAGTCGTGTGAAAAACGGAATTTTCTCTTCCGCGC
CGATGTGGTTTGATGTTGATATTTAAATCGAAAACGCCGACTGCAAGACT
TTTAATTAAGCCTGAGAAGAAAGCTGTAAACCAGCGGGTGCGGGTTTGAC
TGGTCGGTCCGACTACTTGTAGGGATCAATACATAGGCAAAAATAATGCA
AAAATAACCAGCAGCGGGCATCCAATAATTTGGAAACGCAGCATGTTTGT
CACTGTTTCCCTGGTTGTTAAAAGAGGGGTTATCTCTGAATGTTGGCACT
GTACTCTTAAACCCACGATGTTGGGCTTTTCCGCCCCCTCCAATTAAAAC
CCGTACCTAGCTCTCGCTCGTTTTTGCTGGTTTCACTTAGGAAGAACTTT
CCGAAGAGCGATCAGGAACGTTCTGACAATTTTCCCCCGAGAACACCCGT
CGGTGTGACCTTTAACTCGCCTTGTCTCGTCTTGCTCCACCTCCCCCCCC
CCCGCTCTGTTACCGGTAGGCCCGAGACGAGGAGATGGCGCGTACGCCGC
TGCACTACGCCAGCAGATCGGGGGGCGTCGTTACCACCCTCATGCTCCTG
GACAATGGGGCGAACGTTAACGCGAAGACCGGTTCGTACCTCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig109145:267..1411-

>mRNA_H-elongata_contig109145.741.1 ID=mRNA_H-elongata_contig109145.741.1|Name=mRNA_H-elongata_contig109145.741.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig109145:267..1411- (Himanthalia elongata Himel1 dioecious)
CAGGTTTTGCTAGAGAATGGGGCCGATCCGAATGCGCGGGACAAGACGGG
GAGAAGCCCGTTACATCGCGCGGCTCGTTGGGGATCTCCGGCGTGTGGCC
TTCTCCTGCTCGACGCTGGAGCAGATATTGAGCAGGTTTTGCTAGAGAAT
GGGGCCGATCCGAATGCGCGGGACAAGACGGGGAGAAGCCCGTTACATCG
CGCGGCTCGTTGGGGATCTCCGGCGTGTGGCCTTCTCCTGCTCGACGCTG
GAGCAGATATTGAGGCCCGAGACGAGGAGATGGCGCGTACGCCGCTGCAC
TACGCCAGCAGATCGGGGGGCGTCGTTACCACCCTCATGCTCCTGGACAA
TGGGGCGAACGTTAACGCGAAGACCGGTTCGTACCTCTAGGCCCGAGACG
AGGAGATGGCGCGTACGCCGCTGCACTACGCCAGCAGATCGGGGGGCGTC
GTTACCACCCTCATGCTCCTGGACAATGGGGCGAACGTTAACGCGAAGAC
CGGTTCGTACCTCTAG
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