mRNA_H-elongata_contig10909.732.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10909.732.1
Unique NamemRNA_H-elongata_contig10909.732.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10909.732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10909contigH-elongata_contig10909:1207..1747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size264
Cds size219
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10909.732.1prot_H-elongata_contig10909.732.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10909 1252..1747 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929617.7576234-UTR-H-elongata_contig10909:1206..12511622929617.7576234-UTR-H-elongata_contig10909:1206..1251Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10909 1207..1251 +
1691679093.2258384-UTR-H-elongata_contig10909:1206..12511691679093.2258384-UTR-H-elongata_contig10909:1206..1251Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10909 1207..1251 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929617.7740352-CDS-H-elongata_contig10909:1251..13121622929617.7740352-CDS-H-elongata_contig10909:1251..1312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10909 1252..1312 +
1691679093.237385-CDS-H-elongata_contig10909:1251..13121691679093.237385-CDS-H-elongata_contig10909:1251..1312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10909 1252..1312 +
1622929617.7913687-CDS-H-elongata_contig10909:1589..17471622929617.7913687-CDS-H-elongata_contig10909:1589..1747Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10909 1590..1747 +
1691679093.2519042-CDS-H-elongata_contig10909:1589..17471691679093.2519042-CDS-H-elongata_contig10909:1589..1747Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10909 1590..1747 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10909.732.1

>prot_H-elongata_contig10909.732.1 ID=prot_H-elongata_contig10909.732.1|Name=mRNA_H-elongata_contig10909.732.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
MIGGDEYKHDGKTSREGAVVYQRLVDVVHTNTPEEVRDIFGVRIATMGRA
EAFEQLTEVYQGLSLVMHAIKRG
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mRNA from alignment at H-elongata_contig10909:1207..1747+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10909.732.1 ID=mRNA_H-elongata_contig10909.732.1|Name=mRNA_H-elongata_contig10909.732.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=541bp|location=Sequence derived from alignment at H-elongata_contig10909:1207..1747+ (Himanthalia elongata Himel1 dioecious)
CAGGTATATTGAAGCACGACAACCGCACAAGGGTGGCCGGACGGCATGAT
TGGCGGCGACGAATATAAACATGACGGCAAGACGTCGAGAGAGGGTGCAG
TGGTGTGTGAGTGACATCGTCTGAGAGAAGTAAAGATGGACACATTCAAG
GAGCCTCAACATTGCCCGCTTTGTGCCTATCATCGTGCTCTAATATATGG
CTTTATTGAGAGGTTCTGCTAGTCTACGCCAAACGCCAGACTATACCCTA
CATCATGTTTTTGGTTAAAGCCTGTATGGCTAGTAATTAATGCCGTGTAC
AACATAAAAGGGTAGTGCACCACTCTACAGTATTGCACGGTAAGTAAATA
TCCAACATATACAATACTGTCCGATCGCTGCAGACCAGCGCCTAGTGGAT
GTGGTGCACACAAATACGCCGGAAGAAGTGCGGGATATATTCGGTGTTCG
CATAGCAACGATGGGAAGGGCGGAAGCGTTCGAACAGCTCACGGAGGTTT
ACCAGGGACTGTCATTGGTTATGCACGCTATCAAGAGGGGC
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Coding sequence (CDS) from alignment at H-elongata_contig10909:1207..1747+

>mRNA_H-elongata_contig10909.732.1 ID=mRNA_H-elongata_contig10909.732.1|Name=mRNA_H-elongata_contig10909.732.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig10909:1207..1747+ (Himanthalia elongata Himel1 dioecious)
ATGATTGGCGGCGACGAATATAAACATGACGGCAAGACGTCGAGAGAGGG
TGCAGTGGTGTATGATTGGCGGCGACGAATATAAACATGACGGCAAGACG
TCGAGAGAGGGTGCAGTGGTGTACCAGCGCCTAGTGGATGTGGTGCACAC
AAATACGCCGGAAGAAGTGCGGGATATATTCGGTGTTCGCATAGCAACGA
TGGGAAGGGCGGAAGCGTTCGAACAGCTCACGGAGGTTTACCAGGGACTG
TCATTGGTTATGCACGCTATCAAGAGGGGCACCAGCGCCTAGTGGATGTG
GTGCACACAAATACGCCGGAAGAAGTGCGGGATATATTCGGTGTTCGCAT
AGCAACGATGGGAAGGGCGGAAGCGTTCGAACAGCTCACGGAGGTTTACC
AGGGACTGTCATTGGTTATGCACGCTATCAAGAGGGGC
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