mRNA_H-elongata_contig109062.730.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109062.730.1
Unique NamemRNA_H-elongata_contig109062.730.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109062.730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109062contigH-elongata_contig109062:321..961 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size611
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109062.730.1prot_H-elongata_contig109062.730.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109062 360..755 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929617.4128778-UTR-H-elongata_contig109062:320..3591622929617.4128778-UTR-H-elongata_contig109062:320..359Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig109062 321..359 -
1691679093.1741786-UTR-H-elongata_contig109062:320..3591691679093.1741786-UTR-H-elongata_contig109062:320..359Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig109062 321..359 -
1622929617.495037-UTR-H-elongata_contig109062:755..9611622929617.495037-UTR-H-elongata_contig109062:755..961Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig109062 756..961 -
1691679093.195669-UTR-H-elongata_contig109062:755..9611691679093.195669-UTR-H-elongata_contig109062:755..961Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig109062 756..961 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929617.4636762-CDS-H-elongata_contig109062:359..5411622929617.4636762-CDS-H-elongata_contig109062:359..541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109062 360..541 -
1691679093.181462-CDS-H-elongata_contig109062:359..5411691679093.181462-CDS-H-elongata_contig109062:359..541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109062 360..541 -
1622929617.4821782-CDS-H-elongata_contig109062:571..7551622929617.4821782-CDS-H-elongata_contig109062:571..755Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109062 572..755 -
1691679093.188329-CDS-H-elongata_contig109062:571..7551691679093.188329-CDS-H-elongata_contig109062:571..755Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109062 572..755 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109062.730.1

>prot_H-elongata_contig109062.730.1 ID=prot_H-elongata_contig109062.730.1|Name=mRNA_H-elongata_contig109062.730.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
MDVVTGTTEGSAVLDATVDSGVTFAAVGSAVVTLAVGSGVTGATVGSTVA
TVGSGVTTAPVVTTAPVGSAVAATVGSVDGAIVGRSVSLMAWEAVGAGDA
VVLLVLVLLEVDVEADDNSHT*
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mRNA from alignment at H-elongata_contig109062:321..961-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109062.730.1 ID=mRNA_H-elongata_contig109062.730.1|Name=mRNA_H-elongata_contig109062.730.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=641bp|location=Sequence derived from alignment at H-elongata_contig109062:321..961- (Himanthalia elongata Himel1 dioecious)
TCACCGCCGGCGTCGAAGAGGGAGCTTCAGTTTCAGCTTCAGTTGACGTC
GCCCCGGCGGTCGTCGAAGAGGGTACCTCCGTTTGTAGCCCCTCTCTGAA
ACTCGACGGTGCCCAGGTGTCGTCGTCCATTTCCGTGTCGATACCTTTGC
CCCCGCTGGACGCGGCCACACTGGGAGCATTCGTTGGCACTGTGGTCGAC
ACGGACATGGATGTCGTAACCGGCACCACTGAGGGCTCTGCAGTTCTGGA
CGCCACCGTGGACTCGGGGGTGACATTTGCCGCCGTCGGCTCTGCAGTGG
TCACCTTGGCGGTGGGCTCCGGAGTGACGGGAGCCACCGTAGGCTCCACA
GTGGCCACCGTGGGCTCTGGAGTAACGACGGCCCCCGTAGGCTCCGCAGT
GGCCACCGTGGGCTCCGGAGTAACGACGGCCCCCGTAGGCTCCGCAGTGG
CTGCGACGGTTGGCTCGGTTGACGGGGCGATCGTTGGACGGTCGGTGAGC
TTGATGGCTTGGGAGGCGGTCGGGGCGGGAGATGCCGTTGTACTGTTGGT
GCTTGTGCTGCTGGAGGTGGACGTTGAAGCGGACGATAACTCGCACACGT
AGTGCTTGCCCACCAGGCAGGAAAAGGGATTCCATTCCTTG
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Coding sequence (CDS) from alignment at H-elongata_contig109062:321..961-

>mRNA_H-elongata_contig109062.730.1 ID=mRNA_H-elongata_contig109062.730.1|Name=mRNA_H-elongata_contig109062.730.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig109062:321..961- (Himanthalia elongata Himel1 dioecious)
ATGGATGTCGTAACCGGCACCACTGAGGGCTCTGCAGTTCTGGACGCCAC
CGTGGACTCGGGGGTGACATTTGCCGCCGTCGGCTCTGCAGTGGTCACCT
TGGCGGTGGGCTCCGGAGTGACGGGAGCCACCGTAGGCTCCACAGTGGCC
ACCGTGGGCTCTGGAGTAACGACGGCCCCCGTAGATGGATGTCGTAACCG
GCACCACTGAGGGCTCTGCAGTTCTGGACGCCACCGTGGACTCGGGGGTG
ACATTTGCCGCCGTCGGCTCTGCAGTGGTCACCTTGGCGGTGGGCTCCGG
AGTGACGGGAGCCACCGTAGGCTCCACAGTGGCCACCGTGGGCTCTGGAG
TAACGACGGCCCCCGTAGTAACGACGGCCCCCGTAGGCTCCGCAGTGGCT
GCGACGGTTGGCTCGGTTGACGGGGCGATCGTTGGACGGTCGGTGAGCTT
GATGGCTTGGGAGGCGGTCGGGGCGGGAGATGCCGTTGTACTGTTGGTGC
TTGTGCTGCTGGAGGTGGACGTTGAAGCGGACGATAACTCGCACACGTAG
TAACGACGGCCCCCGTAGGCTCCGCAGTGGCTGCGACGGTTGGCTCGGTT
GACGGGGCGATCGTTGGACGGTCGGTGAGCTTGATGGCTTGGGAGGCGGT
CGGGGCGGGAGATGCCGTTGTACTGTTGGTGCTTGTGCTGCTGGAGGTGG
ACGTTGAAGCGGACGATAACTCGCACACGTAG
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