mRNA_H-elongata_contig109008.728.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109008.728.1
Unique NamemRNA_H-elongata_contig109008.728.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109008.728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109008contigH-elongata_contig109008:115..471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size330
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929617.2562945-CDS-H-elongata_contig109008:114..4441622929617.2562945-CDS-H-elongata_contig109008:114..444Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109008 115..444 -
1691679093.0837166-CDS-H-elongata_contig109008:114..4441691679093.0837166-CDS-H-elongata_contig109008:114..444Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109008 115..444 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929617.2713835-UTR-H-elongata_contig109008:444..4711622929617.2713835-UTR-H-elongata_contig109008:444..471Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig109008 445..471 -
1691679093.1021004-UTR-H-elongata_contig109008:444..4711691679093.1021004-UTR-H-elongata_contig109008:444..471Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig109008 445..471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109008.728.1prot_H-elongata_contig109008.728.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109008 115..444 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109008.728.1

>prot_H-elongata_contig109008.728.1 ID=prot_H-elongata_contig109008.728.1|Name=mRNA_H-elongata_contig109008.728.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
MWDTGASQHFSNGSAHMLDFGECQKFMRTASGKRFPIEVHGDLILHFRSE
GEVVHLKLRNVAYVPQLSHNLVSLRAVANSGGSYSGDDAGVRIFTKLDRT
LFAPSLGKLN
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mRNA from alignment at H-elongata_contig109008:115..471-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109008.728.1 ID=mRNA_H-elongata_contig109008.728.1|Name=mRNA_H-elongata_contig109008.728.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=357bp|location=Sequence derived from alignment at H-elongata_contig109008:115..471- (Himanthalia elongata Himel1 dioecious)
GATGGTAAGGTTGGGGACGAGCGTTGGATGTGGGACACCGGCGCTTCGCA
GCATTTTAGCAATGGTTCTGCGCACATGCTCGATTTCGGTGAATGCCAAA
AGTTTATGCGGACGGCTAGCGGAAAGAGATTCCCGATCGAGGTTCACGGT
GACCTTATCTTGCACTTTCGGTCTGAGGGAGAGGTGGTACATCTCAAGCT
TCGCAACGTAGCGTATGTGCCACAACTCTCTCACAATCTGGTATCACTAA
GAGCAGTAGCCAACAGTGGAGGTTCATACTCCGGTGACGATGCCGGGGTA
CGGATCTTCACCAAGCTAGATCGTACTTTGTTCGCTCCGTCCCTCGGCAA
GCTTAAC
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Coding sequence (CDS) from alignment at H-elongata_contig109008:115..471-

>mRNA_H-elongata_contig109008.728.1 ID=mRNA_H-elongata_contig109008.728.1|Name=mRNA_H-elongata_contig109008.728.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig109008:115..471- (Himanthalia elongata Himel1 dioecious)
ATGTGGGACACCGGCGCTTCGCAGCATTTTAGCAATGGTTCTGCGCACAT
GCTCGATTTCGGTGAATGCCAAAAGTTTATGCGGACGGCTAGCGGAAAGA
GATTCCCGATCGAGGTTCACGGTGACCTTATCTTGCACTTTCGGTCTGAG
GGAGAGGTGGTACATCTCAAGCTTCGCAACGTAGCGTATGTGCCACAACT
CTCTCACAATCTGGTATCACTAAGAGCAGTAGCCAACAGTGGAGGTTCAT
ACTCCGGTGACGATGCCGGGGTACGGATCTTCACCAAGCTAGATCGTACT
TTGTTCGCTCCGTCCCTCGGCAAGCTTAACATGTGGGACACCGGCGCTTC
GCAGCATTTTAGCAATGGTTCTGCGCACATGCTCGATTTCGGTGAATGCC
AAAAGTTTATGCGGACGGCTAGCGGAAAGAGATTCCCGATCGAGGTTCAC
GGTGACCTTATCTTGCACTTTCGGTCTGAGGGAGAGGTGGTACATCTCAA
GCTTCGCAACGTAGCGTATGTGCCACAACTCTCTCACAATCTGGTATCAC
TAAGAGCAGTAGCCAACAGTGGAGGTTCATACTCCGGTGACGATGCCGGG
GTACGGATCTTCACCAAGCTAGATCGTACTTTGTTCGCTCCGTCCCTCGG
CAAGCTTAAC
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