prot_H-elongata_contig108944.726.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig108944.726.1
Unique Nameprot_H-elongata_contig108944.726.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length135
Homology
BLAST of mRNA_H-elongata_contig108944.726.1 vs. uniprot
Match: A0A6H5JHY6_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY6_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.660e-31
Identity = 64/116 (55.17%), Postives = 76/116 (65.52%), Query Frame = 0
Query:   19 YICFIDLKTSYDSVDRTLLWTVLARFEVPQKIRTVIRQFHDGMEACVVRLDDGVCSEWFPVEQGFRQGFVLAPLLFNILFPMVINKRAYTRFKADSDIMDDLVHLRR-KTRVGGGE 133
            Y+CF+DL  +YDSVDR +LW VLAR  +P K+  VIRQFHDGM A  VR+DDG  S+WF V QG RQG VL+PLLFNI F   +      RF  D  ++  LV L   KT  GGGE
Sbjct:   20 YMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRA-TVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEALEV-VVIRFSEDDVVLRSLVCLEEGKTEAGGGE 133          
BLAST of mRNA_H-elongata_contig108944.726.1 vs. uniprot
Match: A0A6H5JBT6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBT6_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.160e-29
Identity = 65/116 (56.03%), Postives = 77/116 (66.38%), Query Frame = 0
Query:   19 YICFIDLKTSYDSVDRTLLWTVLARFEVPQKIRTVIRQFHDGMEACVVRLDDGVCSEWFPVEQGFRQGFVLAPLLFNILFPMVINKRAYTRFKADSDIMDDLVHLRR-KTRVGGGE 133
            Y+CF+DL  +YDSVDR +LW VLAR  +P K+  VIRQFHDGM A V R+DDG  S+WF V QG RQG VL+PLLFNI F  V+      RF  D  ++  LV L   KT  GGGE
Sbjct:   20 YMCFVDLNKAYDSVDREMLWKVLARGGIPAKLIEVIRQFHDGMRARV-RMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEV-VVIRFSEDDVVLRSLVCLEEGKTEAGGGE 133          
BLAST of mRNA_H-elongata_contig108944.726.1 vs. uniprot
Match: A0A6H5JVE1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE1_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.200e-29
Identity = 65/116 (56.03%), Postives = 77/116 (66.38%), Query Frame = 0
Query:   19 YICFIDLKTSYDSVDRTLLWTVLARFEVPQKIRTVIRQFHDGMEACVVRLDDGVCSEWFPVEQGFRQGFVLAPLLFNILFPMVINKRAYTRFKADSDIMDDLVHLRR-KTRVGGGE 133
            Y+CF+DL  +YDSVDR +LW VLAR  +P K+  VIRQFHDGM A V R+DDG  S+WF V QG RQG VL+PLLFNI F  V+   A  RF  D  ++  LV L   KT   GGE
Sbjct:  115 YMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARV-RMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEFAAI-RFSEDDVVLRSLVCLEEGKTEARGGE 228          
BLAST of mRNA_H-elongata_contig108944.726.1 vs. uniprot
Match: A0A6H5KBJ5_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBJ5_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.980e-29
Identity = 61/113 (53.98%), Postives = 77/113 (68.14%), Query Frame = 0
Query:   20 ICFIDLKTSYDSVDRTLLWTVLARFEVPQKIRTVIRQFHDGMEACVVRLDDGVCSEWFPVEQGFRQGFVLAPLLFNILF--PMVINKRAYTRFKADSDIMDDLVHLRRKTRVG 130
            +CFIDL+ +YDSVDR LLW VLAR  +P ++  VIR+FH GM A V R DDG  S+WFPV QG RQG  ++PLLFN+ F  P+ I     TRF  D  I+ DLV+L+ + R G
Sbjct:    1 MCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARV-RTDDGELSDWFPVTQGLRQGCSMSPLLFNVFFAAPLEI---IVTRFSQDEVIVRDLVYLKEEERRG 109          
BLAST of mRNA_H-elongata_contig108944.726.1 vs. uniprot
Match: A0A6H5L1H2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1H2_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 2.150e-29
Identity = 65/116 (56.03%), Postives = 78/116 (67.24%), Query Frame = 0
Query:   19 YICFIDLKTSYDSVDRTLLWTVLARFEVPQKIRTVIRQFHDGMEACVVRLDDGVCSEWFPVEQGFRQGFVLAPLLFNILFPMVINKRAYTRFKADSDIMDDLVHLRR-KTRVGGGE 133
            Y+CF+DL  +YDSVDR +LW VLAR  +P K+  VIRQFHDGM A V R+DDG  S+WF V QG RQG VL+PLLFNI F  V+      RF  D  ++ +LV L   KT  GGGE
Sbjct:  226 YMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARV-RMDDGEVSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEV-VVIRFSEDDVVLQNLVCLEEGKTEAGGGE 339          
BLAST of mRNA_H-elongata_contig108944.726.1 vs. uniprot
Match: A0A6H5KIF0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIF0_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 3.120e-29
Identity = 65/117 (55.56%), Postives = 77/117 (65.81%), Query Frame = 0
Query:   19 YICFIDLKTSYDSVDRTLLWTVLARFEVPQKIRTVIRQFHDGMEACVVRLDDGVCSEWFPVEQGFRQGFVLAPLLFNILFPMVINKRAYTRFKADSDIMDDLVHLRR-KTRVGGGER 134
            Y+CF+DL  +YDSVDR +LW VLAR  +P K+  VIRQFHDGM A V R DDG  S+WF V QG RQG VL+PLLFNI F  V+      RF  D  ++  LV L   KT  GGGE+
Sbjct:  169 YMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARV-RTDDGEPSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEV-VVIRFSEDDIVLRSLVCLEEGKTEAGGGEK 283          
BLAST of mRNA_H-elongata_contig108944.726.1 vs. uniprot
Match: A0A6H5JBH7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBH7_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 5.580e-29
Identity = 63/114 (55.26%), Postives = 74/114 (64.91%), Query Frame = 0
Query:   19 YICFIDLKTSYDSVDRTLLWTVLARFEVPQKIRTVIRQFHDGMEACVVRLDDGVCSEWFPVEQGFRQGFVLAPLLFNILFPMVINKRAYTRFKADSDIMDDLVHLRRKTRVGGG 132
            Y+CFIDL+ +YDSVDR LLW VLAR  +  +I  VIR+FH GM A V R+DDG  S+WFPV QG RQG  ++PLLFN  F   +     TRF  D  IM DLV L  K   GGG
Sbjct:   20 YMCFIDLQKAYDSVDRELLWKVLARAGIAAEIIAVIRKFHVGMRARV-RMDDGELSDWFPVTQGLRQGCSMSPLLFNAFFAAPLEV-IVTRFSKDEVIMRDLVCL--KEEEGGG 129          
BLAST of mRNA_H-elongata_contig108944.726.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.120e-28
Identity = 64/116 (55.17%), Postives = 80/116 (68.97%), Query Frame = 0
Query:   19 YICFIDLKTSYDSVDRTLLWTVLARFEVPQKIRTVIRQFHDGMEACVVRLDDGVCSEWFPVEQGFRQGFVLAPLLFNILF--PMVINKRAYTRFKADSDIMDDLVHLRRKTRVGGG 132
            Y+CFIDL+ +YDSVDR LLW VLAR  +P ++  VIR+FH GM A V R DDG  S+WFPV QG RQG  ++PLLFN+ F  P+ I     TRF  D  I+ DLV+L+ + R GGG
Sbjct:  161 YMCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARV-RTDDGELSDWFPVTQGLRQGCSMSPLLFNVFFAAPLEI---IVTRFSQDEVIVRDLVYLKEEERRGGG 272          
BLAST of mRNA_H-elongata_contig108944.726.1 vs. uniprot
Match: A0A6H5KCH9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCH9_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 1.240e-28
Identity = 64/116 (55.17%), Postives = 77/116 (66.38%), Query Frame = 0
Query:   19 YICFIDLKTSYDSVDRTLLWTVLARFEVPQKIRTVIRQFHDGMEACVVRLDDGVCSEWFPVEQGFRQGFVLAPLLFNILFPMVINKRAYTRFKADSDIMDDLVHLRR-KTRVGGGE 133
            Y+CF+DL  +YDSVDR +LW VLAR  +P K+  VIRQFHDGM A V R+DDG  S+WF V QG RQG VL+PLLFNI F  V  +    RF  D  ++  LV L   K+  GGGE
Sbjct:  172 YMCFVDLNKAYDSVDREMLWKVLARARIPAKLIEVIRQFHDGMRARV-RMDDGEPSDWFFVTQGMRQGCVLSPLLFNIFFAEV--EVIVIRFSEDDVVLRSLVCLEEGKSEAGGGE 284          
BLAST of mRNA_H-elongata_contig108944.726.1 vs. uniprot
Match: A0A6H5JLM6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM6_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.410e-28
Identity = 64/116 (55.17%), Postives = 80/116 (68.97%), Query Frame = 0
Query:   19 YICFIDLKTSYDSVDRTLLWTVLARFEVPQKIRTVIRQFHDGMEACVVRLDDGVCSEWFPVEQGFRQGFVLAPLLFNILF--PMVINKRAYTRFKADSDIMDDLVHLRRKTRVGGG 132
            Y+CFIDL+ +YDSVDR LLW VLAR  +P ++  VIR+FH GM A V R DDG  S+WFPV QG RQG  ++PLLFN+ F  P+ I     TRF  D  I+ DLV+L+ + R GGG
Sbjct: 1149 YMCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARV-RTDDGELSDWFPVTQGLRQGCSMSPLLFNVFFAAPLEI---IVTRFSQDEVIVRDLVYLKEEERRGGG 1260          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108944.726.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHY6_9PHAE1.660e-3155.17Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JBT6_9PHAE1.160e-2956.03Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JVE1_9PHAE1.200e-2956.03Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KBJ5_9PHAE1.980e-2953.98Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L1H2_9PHAE2.150e-2956.03Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KIF0_9PHAE3.120e-2955.56Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JBH7_9PHAE5.580e-2955.26Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KA81_9PHAE1.120e-2855.17Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KCH9_9PHAE1.240e-2855.17Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JLM6_9PHAE1.410e-2855.17Reverse transcriptase domain-containing protein n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 11..99
e-value: 8.2E-14
score: 51.6
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 1..134
score: 10.905
NoneNo IPR availablePANTHERPTHR19446:SF411coord: 19..103
NoneNo IPR availablePANTHERPTHR19446REVERSE TRANSCRIPTASEScoord: 19..103
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..82
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 83..102
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 103..134

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig108944contigH-elongata_contig108944:1658..2062 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig108944.726.1mRNA_H-elongata_contig108944.726.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig108944 1658..2062 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig108944.726.1 ID=prot_H-elongata_contig108944.726.1|Name=mRNA_H-elongata_contig108944.726.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
NIIHDGRRLSLRQPPSGQYICFIDLKTSYDSVDRTLLWTVLARFEVPQKI
RTVIRQFHDGMEACVVRLDDGVCSEWFPVEQGFRQGFVLAPLLFNILFPM
VINKRAYTRFKADSDIMDDLVHLRRKTRVGGGER*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom