mRNA_H-elongata_contig108944.726.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig108944.726.1
Unique NamemRNA_H-elongata_contig108944.726.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig108944.726.1 vs. uniprot
Match: A0A6H5JHY6_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY6_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.660e-31
Identity = 64/116 (55.17%), Postives = 76/116 (65.52%), Query Frame = 1
Query:   55 YICFIDLKTSYDSVDRTLLWTVLARFEVPQKIRTVIRQFHDGMEACVVRLDDGVCSEWFPVEQGFRQGFVLAPLLFNILFPMVINKRAYTRFKADSDIMDDLVHLRR-KTRVGGGE 399
            Y+CF+DL  +YDSVDR +LW VLAR  +P K+  VIRQFHDGM A  VR+DDG  S+WF V QG RQG VL+PLLFNI F   +      RF  D  ++  LV L   KT  GGGE
Sbjct:   20 YMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRA-TVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEALEV-VVIRFSEDDVVLRSLVCLEEGKTEAGGGE 133          
BLAST of mRNA_H-elongata_contig108944.726.1 vs. uniprot
Match: A0A6H5JBT6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBT6_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.160e-29
Identity = 65/116 (56.03%), Postives = 77/116 (66.38%), Query Frame = 1
Query:   55 YICFIDLKTSYDSVDRTLLWTVLARFEVPQKIRTVIRQFHDGMEACVVRLDDGVCSEWFPVEQGFRQGFVLAPLLFNILFPMVINKRAYTRFKADSDIMDDLVHLRR-KTRVGGGE 399
            Y+CF+DL  +YDSVDR +LW VLAR  +P K+  VIRQFHDGM A V R+DDG  S+WF V QG RQG VL+PLLFNI F  V+      RF  D  ++  LV L   KT  GGGE
Sbjct:   20 YMCFVDLNKAYDSVDREMLWKVLARGGIPAKLIEVIRQFHDGMRARV-RMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEV-VVIRFSEDDVVLRSLVCLEEGKTEAGGGE 133          
BLAST of mRNA_H-elongata_contig108944.726.1 vs. uniprot
Match: A0A6H5JVE1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE1_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.200e-29
Identity = 65/116 (56.03%), Postives = 77/116 (66.38%), Query Frame = 1
Query:   55 YICFIDLKTSYDSVDRTLLWTVLARFEVPQKIRTVIRQFHDGMEACVVRLDDGVCSEWFPVEQGFRQGFVLAPLLFNILFPMVINKRAYTRFKADSDIMDDLVHLRR-KTRVGGGE 399
            Y+CF+DL  +YDSVDR +LW VLAR  +P K+  VIRQFHDGM A V R+DDG  S+WF V QG RQG VL+PLLFNI F  V+   A  RF  D  ++  LV L   KT   GGE
Sbjct:  115 YMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARV-RMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEFAAI-RFSEDDVVLRSLVCLEEGKTEARGGE 228          
BLAST of mRNA_H-elongata_contig108944.726.1 vs. uniprot
Match: A0A6H5KBJ5_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBJ5_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.980e-29
Identity = 61/113 (53.98%), Postives = 77/113 (68.14%), Query Frame = 1
Query:   58 ICFIDLKTSYDSVDRTLLWTVLARFEVPQKIRTVIRQFHDGMEACVVRLDDGVCSEWFPVEQGFRQGFVLAPLLFNILF--PMVINKRAYTRFKADSDIMDDLVHLRRKTRVG 390
            +CFIDL+ +YDSVDR LLW VLAR  +P ++  VIR+FH GM A V R DDG  S+WFPV QG RQG  ++PLLFN+ F  P+ I     TRF  D  I+ DLV+L+ + R G
Sbjct:    1 MCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARV-RTDDGELSDWFPVTQGLRQGCSMSPLLFNVFFAAPLEI---IVTRFSQDEVIVRDLVYLKEEERRG 109          
BLAST of mRNA_H-elongata_contig108944.726.1 vs. uniprot
Match: A0A6H5L1H2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1H2_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 2.150e-29
Identity = 65/116 (56.03%), Postives = 78/116 (67.24%), Query Frame = 1
Query:   55 YICFIDLKTSYDSVDRTLLWTVLARFEVPQKIRTVIRQFHDGMEACVVRLDDGVCSEWFPVEQGFRQGFVLAPLLFNILFPMVINKRAYTRFKADSDIMDDLVHLRR-KTRVGGGE 399
            Y+CF+DL  +YDSVDR +LW VLAR  +P K+  VIRQFHDGM A V R+DDG  S+WF V QG RQG VL+PLLFNI F  V+      RF  D  ++ +LV L   KT  GGGE
Sbjct:  226 YMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARV-RMDDGEVSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEV-VVIRFSEDDVVLQNLVCLEEGKTEAGGGE 339          
BLAST of mRNA_H-elongata_contig108944.726.1 vs. uniprot
Match: A0A6H5KIF0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIF0_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 3.120e-29
Identity = 65/117 (55.56%), Postives = 77/117 (65.81%), Query Frame = 1
Query:   55 YICFIDLKTSYDSVDRTLLWTVLARFEVPQKIRTVIRQFHDGMEACVVRLDDGVCSEWFPVEQGFRQGFVLAPLLFNILFPMVINKRAYTRFKADSDIMDDLVHLRR-KTRVGGGER 402
            Y+CF+DL  +YDSVDR +LW VLAR  +P K+  VIRQFHDGM A V R DDG  S+WF V QG RQG VL+PLLFNI F  V+      RF  D  ++  LV L   KT  GGGE+
Sbjct:  169 YMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARV-RTDDGEPSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEV-VVIRFSEDDIVLRSLVCLEEGKTEAGGGEK 283          
BLAST of mRNA_H-elongata_contig108944.726.1 vs. uniprot
Match: A0A6H5JBH7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBH7_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 5.580e-29
Identity = 63/114 (55.26%), Postives = 74/114 (64.91%), Query Frame = 1
Query:   55 YICFIDLKTSYDSVDRTLLWTVLARFEVPQKIRTVIRQFHDGMEACVVRLDDGVCSEWFPVEQGFRQGFVLAPLLFNILFPMVINKRAYTRFKADSDIMDDLVHLRRKTRVGGG 396
            Y+CFIDL+ +YDSVDR LLW VLAR  +  +I  VIR+FH GM A V R+DDG  S+WFPV QG RQG  ++PLLFN  F   +     TRF  D  IM DLV L  K   GGG
Sbjct:   20 YMCFIDLQKAYDSVDRELLWKVLARAGIAAEIIAVIRKFHVGMRARV-RMDDGELSDWFPVTQGLRQGCSMSPLLFNAFFAAPLEV-IVTRFSKDEVIMRDLVCL--KEEEGGG 129          
BLAST of mRNA_H-elongata_contig108944.726.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.120e-28
Identity = 64/116 (55.17%), Postives = 80/116 (68.97%), Query Frame = 1
Query:   55 YICFIDLKTSYDSVDRTLLWTVLARFEVPQKIRTVIRQFHDGMEACVVRLDDGVCSEWFPVEQGFRQGFVLAPLLFNILF--PMVINKRAYTRFKADSDIMDDLVHLRRKTRVGGG 396
            Y+CFIDL+ +YDSVDR LLW VLAR  +P ++  VIR+FH GM A V R DDG  S+WFPV QG RQG  ++PLLFN+ F  P+ I     TRF  D  I+ DLV+L+ + R GGG
Sbjct:  161 YMCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARV-RTDDGELSDWFPVTQGLRQGCSMSPLLFNVFFAAPLEI---IVTRFSQDEVIVRDLVYLKEEERRGGG 272          
BLAST of mRNA_H-elongata_contig108944.726.1 vs. uniprot
Match: A0A6H5KCH9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCH9_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 1.240e-28
Identity = 64/116 (55.17%), Postives = 77/116 (66.38%), Query Frame = 1
Query:   55 YICFIDLKTSYDSVDRTLLWTVLARFEVPQKIRTVIRQFHDGMEACVVRLDDGVCSEWFPVEQGFRQGFVLAPLLFNILFPMVINKRAYTRFKADSDIMDDLVHLRR-KTRVGGGE 399
            Y+CF+DL  +YDSVDR +LW VLAR  +P K+  VIRQFHDGM A V R+DDG  S+WF V QG RQG VL+PLLFNI F  V  +    RF  D  ++  LV L   K+  GGGE
Sbjct:  172 YMCFVDLNKAYDSVDREMLWKVLARARIPAKLIEVIRQFHDGMRARV-RMDDGEPSDWFFVTQGMRQGCVLSPLLFNIFFAEV--EVIVIRFSEDDVVLRSLVCLEEGKSEAGGGE 284          
BLAST of mRNA_H-elongata_contig108944.726.1 vs. uniprot
Match: A0A6H5JLM6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM6_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.410e-28
Identity = 64/116 (55.17%), Postives = 80/116 (68.97%), Query Frame = 1
Query:   55 YICFIDLKTSYDSVDRTLLWTVLARFEVPQKIRTVIRQFHDGMEACVVRLDDGVCSEWFPVEQGFRQGFVLAPLLFNILF--PMVINKRAYTRFKADSDIMDDLVHLRRKTRVGGG 396
            Y+CFIDL+ +YDSVDR LLW VLAR  +P ++  VIR+FH GM A V R DDG  S+WFPV QG RQG  ++PLLFN+ F  P+ I     TRF  D  I+ DLV+L+ + R GGG
Sbjct: 1149 YMCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARV-RTDDGELSDWFPVTQGLRQGCSMSPLLFNVFFAAPLEI---IVTRFSQDEVIVRDLVYLKEEERRGGG 1260          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108944.726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHY6_9PHAE1.660e-3155.17Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JBT6_9PHAE1.160e-2956.03Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JVE1_9PHAE1.200e-2956.03Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KBJ5_9PHAE1.980e-2953.98Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L1H2_9PHAE2.150e-2956.03Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KIF0_9PHAE3.120e-2955.56Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JBH7_9PHAE5.580e-2955.26Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KA81_9PHAE1.120e-2855.17Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KCH9_9PHAE1.240e-2855.17Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JLM6_9PHAE1.410e-2855.17Reverse transcriptase domain-containing protein n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig108944contigH-elongata_contig108944:1658..2062 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score87.4
Seed ortholog evalue5.5e-15
Seed eggNOG ortholog6500.XP_005100548.1
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs39TZY@33154,3BI15@33208,3E41I@33213,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size405
Cds size405
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929617.1064477-CDS-H-elongata_contig108944:1657..20621622929617.1064477-CDS-H-elongata_contig108944:1657..2062Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108944 1658..2062 -
1691679093.0306919-CDS-H-elongata_contig108944:1657..20621691679093.0306919-CDS-H-elongata_contig108944:1657..2062Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108944 1658..2062 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig108944.726.1prot_H-elongata_contig108944.726.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig108944 1658..2062 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig108944.726.1

>prot_H-elongata_contig108944.726.1 ID=prot_H-elongata_contig108944.726.1|Name=mRNA_H-elongata_contig108944.726.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
NIIHDGRRLSLRQPPSGQYICFIDLKTSYDSVDRTLLWTVLARFEVPQKI
RTVIRQFHDGMEACVVRLDDGVCSEWFPVEQGFRQGFVLAPLLFNILFPM
VINKRAYTRFKADSDIMDDLVHLRRKTRVGGGER*
back to top

mRNA from alignment at H-elongata_contig108944:1658..2062-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig108944.726.1 ID=mRNA_H-elongata_contig108944.726.1|Name=mRNA_H-elongata_contig108944.726.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=405bp|location=Sequence derived from alignment at H-elongata_contig108944:1658..2062- (Himanthalia elongata Himel1 dioecious)
AACATTATTCACGACGGACGGCGTTTATCACTACGTCAACCGCCATCAGG CCAATATATATGCTTTATCGACCTTAAAACATCGTACGACTCTGTTGACC GGACCCTCCTCTGGACAGTACTCGCCCGTTTTGAGGTACCACAAAAAATT AGAACAGTCATTCGTCAATTCCATGATGGCATGGAAGCATGTGTTGTGCG GCTCGATGACGGGGTTTGCTCAGAGTGGTTCCCTGTGGAACAGGGCTTTC GTCAAGGGTTTGTGCTTGCGCCCCTCCTTTTCAATATATTATTCCCTATG GTTATAAACAAACGGGCCTACACGCGTTTCAAGGCAGATAGCGACATCAT GGATGACCTGGTGCACCTCAGGAGGAAAACAAGGGTAGGGGGGGGCGAGA GATAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig108944:1658..2062-

>mRNA_H-elongata_contig108944.726.1 ID=mRNA_H-elongata_contig108944.726.1|Name=mRNA_H-elongata_contig108944.726.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig108944:1658..2062- (Himanthalia elongata Himel1 dioecious)
AACATTATTCACGACGGACGGCGTTTATCACTACGTCAACCGCCATCAGG
CCAATATATATGCTTTATCGACCTTAAAACATCGTACGACTCTGTTGACC
GGACCCTCCTCTGGACAGTACTCGCCCGTTTTGAGGTACCACAAAAAATT
AGAACAGTCATTCGTCAATTCCATGATGGCATGGAAGCATGTGTTGTGCG
GCTCGATGACGGGGTTTGCTCAGAGTGGTTCCCTGTGGAACAGGGCTTTC
GTCAAGGGTTTGTGCTTGCGCCCCTCCTTTTCAATATATTATTCCCTATG
GTTATAAACAAACGGGCCTACACGCGTTTCAAGGCAGATAGCGACATCAT
GGATGACCTGGTGCACCTCAGGAGGAAAACAAGGGTAGGGGGGGGCGAGA
GATAGAACATTATTCACGACGGACGGCGTTTATCACTACGTCAACCGCCA
TCAGGCCAATATATATGCTTTATCGACCTTAAAACATCGTACGACTCTGT
TGACCGGACCCTCCTCTGGACAGTACTCGCCCGTTTTGAGGTACCACAAA
AAATTAGAACAGTCATTCGTCAATTCCATGATGGCATGGAAGCATGTGTT
GTGCGGCTCGATGACGGGGTTTGCTCAGAGTGGTTCCCTGTGGAACAGGG
CTTTCGTCAAGGGTTTGTGCTTGCGCCCCTCCTTTTCAATATATTATTCC
CTATGGTTATAAACAAACGGGCCTACACGCGTTTCAAGGCAGATAGCGAC
ATCATGGATGACCTGGTGCACCTCAGGAGGAAAACAAGGGTAGGGGGGGG
CGAGAGATAG
back to top