prot_H-elongata_contig108877.718.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig108877.718.1
Unique Nameprot_H-elongata_contig108877.718.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length302
Homology
BLAST of mRNA_H-elongata_contig108877.718.1 vs. uniprot
Match: A0A6H5K6M3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M3_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 6.020e-44
Identity = 84/139 (60.43%), Postives = 100/139 (71.94%), Query Frame = 0
Query:   39 VSTVCGFCGDVGCHTTIKGPSRKVAPVMHSSCPYAPRKDARDAAVQLSLKSARSGSDTSPCTNIVVKCIFCSQETYIWKYGMADHVTRCHNEDPLVAADTDGAKTFKHNYTVSESEKSKVLKRFKSGKLRPRRDTNALP 177
            VSTVCGFCG VGC +TI  P  +  P++HS+CP APR DAR  AV L+L SAR+ SDTSPCTN+V+KC  CSQ+ YIW YGM DHVTRCH  + LVA  T GA  FK   T+SESEK+KVL + K+G+ R R   N LP
Sbjct: 1088 VSTVCGFCGGVGCRSTIHDPPGEARPLVHSTCPSAPRSDARQEAVALNLSSARADSDTSPCTNMVLKCFLCSQDNYIWNYGMFDHVTRCHQANVLVAVGT-GADKFKEACTISESEKAKVLHKVKAGRPRRRDQGNTLP 1225          
BLAST of mRNA_H-elongata_contig108877.718.1 vs. uniprot
Match: A0A6H5L2E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E6_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 1.020e-41
Identity = 82/130 (63.08%), Postives = 93/130 (71.54%), Query Frame = 0
Query:   28 GRHILKDEAIQVSTVCGFCGDVGCHTTIKGPSRKVAPVMHSSCPYAPRKDARDAAVQLSLKSARSGSDTSPCTNIVVKCIFCSQETYIWKYGMADHVTRCHNEDPLVAADTDGAKTFKHNYTVSESEKSK 157
            G HILKD+   VST CGFCG VG  TTI  P  K  P++HS+CP APR DAR  AV L+L SAR+GSDTS CTN+V KC FCSQ  YIWKY M+DH+TRCH  D LVA  T GA  FK   T+SESEK+K
Sbjct:  403 GGHILKDK---VSTACGFCGGVGRPTTIHDPPGKARPLVHSTCPSAPRSDARQEAVALNLSSARAGSDTSLCTNMVFKCFFCSQYNYIWKYSMSDHITRCHQADVLVAEGT-GADNFKETCTISESEKAK 528          
BLAST of mRNA_H-elongata_contig108877.718.1 vs. uniprot
Match: D7FNW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW9_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 8.260e-29
Identity = 61/102 (59.80%), Postives = 75/102 (73.53%), Query Frame = 0
Query:  102 IVVKCIFCSQETYIWKYGMADHVTRCHNEDPLVAADTDGAKTFKHNYTVSESEKSKVLKRFKSGKLRPRRDTN-ALPTGARKSVSGNGALGNGVPGTRPQEE 202
            +V+KC+FCSQ+TYIWKYGM++HVTRCH ED LVAA T     FK  YT+SESEK+KVL++FK+G+ R R   N ALPTGA  S  GNG  G  + GTR  E+
Sbjct:    1 MVLKCLFCSQDTYIWKYGMSEHVTRCHREDILVAAGTT-VDRFKEAYTISESEKAKVLQKFKAGRPRRRGQGNEALPTGALGSTEGNGTFGRNMSGTRSLED 101          
BLAST of mRNA_H-elongata_contig108877.718.1 vs. uniprot
Match: A0A6H5K5R3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R3_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.590e-22
Identity = 55/102 (53.92%), Postives = 66/102 (64.71%), Query Frame = 0
Query:  102 IVVKCIFCSQETYIWKYGMADHVTRCHNEDPLVAADTDGAKTFKHNYTVSESEKSKVLKRFKSGKLRPRRDTN-ALPTGARKSVSGNGALGNGVPGTRPQEE 202
            +V+KC  CSQ  YIWKYGM++HVTR H ED  VAA T G   FK  Y++SESEK+K L +FK+GK R R   N  LP GA     GNGA G  + GTR  E+
Sbjct:    1 MVLKCFVCSQNNYIWKYGMSEHVTRRHQEDMRVAAGT-GVDKFKEAYSISESEKAKALHKFKAGKPRQRGQGNEVLPPGALGRTEGNGASGRNMAGTRSLED 101          
BLAST of mRNA_H-elongata_contig108877.718.1 vs. uniprot
Match: A0A8H8JBI3_9AGAM (C2H2-type domain-containing protein n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8JBI3_9AGAM)

HSP 1 Score: 70.1 bits (170), Expect = 1.210e-9
Identity = 46/124 (37.10%), Postives = 61/124 (49.19%), Query Frame = 0
Query:   20 RSKMRMHVGRHILKDEAIQVST-------VCGFCGDVGCHTTIKGPSR--KVAPVMHSSCPYAPRKDARDAAVQLSLKSARSGSDTSPCTNIVVKCIFCSQETYIWKYGMADHVTRCHNEDPLV 134
            +SKMRMH+G+H+L   +   +T       +CGFCG  G  T    P R  K   V+ S C Y      RD   + S  +A   S TSPCTN  V C  CS +  +W YG+ DH+   H    L+
Sbjct: 1185 KSKMRMHIGQHLLVLRSSLDATRTGVMADMCGFCGRAGTCTVRVEPQRTGKGLEVV-SDCSY------RD---KFSYAAAAQSSKTSPCTNRPVACPLCSGDRCVWSYGLKDHILAVHPAHQLL 1298          
BLAST of mRNA_H-elongata_contig108877.718.1 vs. uniprot
Match: B0DV83_LACBS (Predicted protein n=1 Tax=Laccaria bicolor (strain S238N-H82 / ATCC MYA-4686) TaxID=486041 RepID=B0DV83_LACBS)

HSP 1 Score: 62.8 bits (151), Expect = 1.420e-8
Identity = 40/116 (34.48%), Postives = 61/116 (52.59%), Query Frame = 0
Query:    4 AGADKILCRLWDQRLPRSKMRMHVGRHIL----KDEAIQVSTV----CGFCG-DVGCHTTIKGPSRKVAPVMHSSCPYAPRKDARDAAVQLSLKSARSGSDTSPCTNIVVKCIFCS 110
            +GA  + C L  ++   SKMR+HVG+HIL    +   +++ ++    CGFCG D GC T +      VA V+ S+CP+   K        +  K+A   +  SPCTNI + C  C+
Sbjct:   28 SGATDVNCELCGEKTTISKMRVHVGKHILYSMRRRPDVELKSMGASPCGFCGLDSGCQTQLTFKKNGVA-VIKSTCPFHYEK--------MQYKAALEPTKASPCTNIPIHCRLCA 134          
BLAST of mRNA_H-elongata_contig108877.718.1 vs. uniprot
Match: A0A4S4MVC7_9APHY (Uncharacterized protein n=1 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4MVC7_9APHY)

HSP 1 Score: 62.8 bits (151), Expect = 2.900e-7
Identity = 42/135 (31.11%), Postives = 61/135 (45.19%), Query Frame = 0
Query:    7 DKILCRLWDQRLPRSKMRMHVGRHIL------KDEAIQVST-VCGFCGDVGCHTTIKGPSRKVAPVMHSSCPYAPRKDARDAAVQLSLKSARSGSDTSPCTNIVVKCIFCSQETY-----IWKYGMADHVTRCHN 129
            D+I C+L +   P S+MR HVG HIL      +D+ I +    CGFCG  GC   +          + S+C Y           Q+    A   S+ +PCTN+ + C+ C +        IWKY    H+T  H+
Sbjct:  770 DEIQCQLCEVNTPLSRMRNHVGIHILHALRGIEDDGIVIGVDPCGFCGLEGCVVQMIDSDDGNTHRILSNCEYH--------YTQMKYGPASRFSNATPCTNVPIHCLSCERTASGLPRTIWKYNALYHITLDHS 896          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108877.718.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5K6M3_9PHAE6.020e-4460.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L2E6_9PHAE1.020e-4163.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNW9_ECTSI8.260e-2959.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5R3_9PHAE1.590e-2253.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8H8JBI3_9AGAM1.210e-937.10C2H2-type domain-containing protein n=1 Tax=Cerato... [more]
B0DV83_LACBS1.420e-834.48Predicted protein n=1 Tax=Laccaria bicolor (strain... [more]
A0A4S4MVC7_9APHY2.900e-731.11Uncharacterized protein n=1 Tax=Antrodiella citrin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig108877contigH-elongata_contig108877:321..1490 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig108877.718.1mRNA_H-elongata_contig108877.718.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig108877 321..1490 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig108877.718.1 ID=prot_H-elongata_contig108877.718.1|Name=mRNA_H-elongata_contig108877.718.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=302bp
AGGAGADKILCRLWDQRLPRSKMRMHVGRHILKDEAIQVSTVCGFCGDVG
CHTTIKGPSRKVAPVMHSSCPYAPRKDARDAAVQLSLKSARSGSDTSPCT
NIVVKCIFCSQETYIWKYGMADHVTRCHNEDPLVAADTDGAKTFKHNYTV
SESEKSKVLKRFKSGKLRPRRDTNALPTGARKSVSGNGALGNGVPGTRPQ
EEEEEGEGEGEEAGEEEEDEDDDEEEDEDKDEDENEEDEDEDEDEDQDGG
NKDEEADGREEGVVEGRRGRKSQRAGSISSSSEAPHEHVQEPVRTSTRGR
PL
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