mRNA_H-elongata_contig10883.716.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10883.716.1
Unique NamemRNA_H-elongata_contig10883.716.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10883.716.1 vs. uniprot
Match: D8LS16_ECTSI (Hypothetical conserved protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS16_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 7.480e-49
Identity = 72/88 (81.82%), Postives = 80/88 (90.91%), Query Frame = 1
Query:    1 KVTKNPNEDKISALGARSWPTWGCGVSKFPWTYEGTETCLILEGEFTVTPDDDREPATVGPGDLCVFPDGMRCTWDVRVPVKKHYRFD 264
            KVTK+P+E++I ALGARSWPTWGCGVSKFPWTYEGTETCLILEG+ TVTPDDDR+   VG GDLCVFPDGM CTWDVR PVKKHY+F+
Sbjct:   62 KVTKDPSEEEIKALGARSWPTWGCGVSKFPWTYEGTETCLILEGDVTVTPDDDRDAVEVGVGDLCVFPDGMSCTWDVRAPVKKHYKFE 149          
BLAST of mRNA_H-elongata_contig10883.716.1 vs. uniprot
Match: A0A7S0WR75_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WR75_9CHLO)

HSP 1 Score: 135 bits (339), Expect = 5.530e-36
Identity = 59/86 (68.60%), Postives = 66/86 (76.74%), Query Frame = 1
Query:    4 VTKNPNEDKISALGARSWPTWGCGVSKFPWTYEGTETCLILEGEFTVTPDDDREPATVGPGDLCVFPDGMRCTWDVRVPVKKHYRF 261
            VT+ P EDK+ ALG RSWPTWGCGVSKFPWTY+ TET  +LEGE TVTP+   EP  +  GDLCVFP GM CTWDVR P+ KHY F
Sbjct:   41 VTRTPPEDKLKALGVRSWPTWGCGVSKFPWTYQETETAYLLEGEVTVTPNG-GEPVEIRAGDLCVFPAGMSCTWDVRKPINKHYDF 125          
BLAST of mRNA_H-elongata_contig10883.716.1 vs. uniprot
Match: Q60B25_METCA (Cupin_3 domain-containing protein n=5 Tax=Methylococcus TaxID=413 RepID=Q60B25_METCA)

HSP 1 Score: 127 bits (318), Expect = 2.600e-33
Identity = 55/87 (63.22%), Postives = 61/87 (70.11%), Query Frame = 1
Query:    1 KVTKNPNEDKISALGARSWPTWGCGVSKFPWTYEGTETCLILEGEFTVTPDDDREPATVGPGDLCVFPDGMRCTWDVRVPVKKHYRF 261
            K+  NP E ++  LG R WPTW CGVS FPWTY+ +ETC ILEGE TVTP    EP  +G GDL  FP GM CTWDV VPVKKHY F
Sbjct:    5 KIENNPPETRLGELGVRRWPTWSCGVSSFPWTYDESETCYILEGEVTVTPQG-GEPVRIGKGDLVTFPPGMSCTWDVHVPVKKHYTF 90          
BLAST of mRNA_H-elongata_contig10883.716.1 vs. uniprot
Match: A0A7S2UX72_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UX72_9STRA)

HSP 1 Score: 128 bits (322), Expect = 2.770e-33
Identity = 52/86 (60.47%), Postives = 61/86 (70.93%), Query Frame = 1
Query:    4 VTKNPNEDKISALGARSWPTWGCGVSKFPWTYEGTETCLILEGEFTVTPDDDREPATVGPGDLCVFPDGMRCTWDVRVPVKKHYRF 261
            V +NP ++K+  +G   WP WGCGVS FPWTYEGTETC I+ GE TVTP D R P TVG GDL  FP+ M CTWDV  P+ KH+ F
Sbjct:   53 VERNPTQEKLEKMGVFDWPKWGCGVSNFPWTYEGTETCYIVSGEVTVTPSDGRAPVTVGEGDLVTFPNRMSCTWDVTKPIDKHFNF 138          
BLAST of mRNA_H-elongata_contig10883.716.1 vs. uniprot
Match: A0A3M1FR86_9BACT (DUF861 domain-containing protein n=2 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=A0A3M1FR86_9BACT)

HSP 1 Score: 124 bits (312), Expect = 3.260e-32
Identity = 51/86 (59.30%), Postives = 62/86 (72.09%), Query Frame = 1
Query:    4 VTKNPNEDKISALGARSWPTWGCGVSKFPWTYEGTETCLILEGEFTVTPDDDREPATVGPGDLCVFPDGMRCTWDVRVPVKKHYRF 261
            +  NP+ +K++ LG  +WPTW C VS FPWTYE TETC ILEG  TVTPD   EP T+G GDL  FP G+ CTW+V  P++KHYRF
Sbjct:    6 IEHNPSREKLAELGVENWPTWSCEVSTFPWTYEDTETCYILEGRVTVTPDG-GEPVTIGKGDLVTFPKGLSCTWEVHAPIRKHYRF 90          
BLAST of mRNA_H-elongata_contig10883.716.1 vs. uniprot
Match: A0A0A0KVZ0_CUCSA (Cupin_3 domain-containing protein n=3 Tax=Benincaseae TaxID=1003877 RepID=A0A0A0KVZ0_CUCSA)

HSP 1 Score: 125 bits (314), Expect = 4.140e-32
Identity = 53/88 (60.23%), Postives = 61/88 (69.32%), Query Frame = 1
Query:    1 KVTKNPNEDKISALGARSWPTWGCGVSKFPWTYEGTETCLILEGEFTVTPDDDREPATVGPGDLCVFPDGMRCTWDVRVPVKKHYRFD 264
            KV KNP+E K++ LG R WP WGCG SKFPWTY   ETC +LEG+  VTP    E   +G GDL VFP GM CTWDV V V KHY+F+
Sbjct:   51 KVEKNPSESKLTELGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAGSNESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYKFE 138          
BLAST of mRNA_H-elongata_contig10883.716.1 vs. uniprot
Match: A0A150FWA4_GONPE (Cupin_3 domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150FWA4_GONPE)

HSP 1 Score: 123 bits (309), Expect = 1.150e-31
Identity = 53/86 (61.63%), Postives = 59/86 (68.60%), Query Frame = 1
Query:    4 VTKNPNEDKISALGARSWPTWGCGVSKFPWTYEGTETCLILEGEFTVTPDDDREPATVGPGDLCVFPDGMRCTWDVRVPVKKHYRF 261
            V + P ED + A G RSWPTWGCGVSKFPWTY+  ETC ILEG   VTP+   EP  V  GDL  FP GM CTWDV+ P+ KHY F
Sbjct:   30 VQRQPGEDVLKAKGVRSWPTWGCGVSKFPWTYQEPETCFILEGRVVVTPNG-GEPVEVAAGDLATFPAGMSCTWDVKAPINKHYNF 114          
BLAST of mRNA_H-elongata_contig10883.716.1 vs. uniprot
Match: A0A8J4LY75_9CHLO (Cupin_3 domain-containing protein n=4 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4LY75_9CHLO)

HSP 1 Score: 123 bits (309), Expect = 1.300e-31
Identity = 52/86 (60.47%), Postives = 59/86 (68.60%), Query Frame = 1
Query:    4 VTKNPNEDKISALGARSWPTWGCGVSKFPWTYEGTETCLILEGEFTVTPDDDREPATVGPGDLCVFPDGMRCTWDVRVPVKKHYRF 261
            V + P ED I A G RSWPTWGCGVSKFPWTY+  ETC ILEG+  VTPD   E   +  GDL +FP GM C WDV+ P+ KHY F
Sbjct:   33 VHRQPAEDVIKAKGVRSWPTWGCGVSKFPWTYKENETCYILEGKVVVTPDAGGEAVEINAGDLAIFPAGMSCIWDVKAPIDKHYNF 118          
BLAST of mRNA_H-elongata_contig10883.716.1 vs. uniprot
Match: A0A2K3E5N5_CHLRE (Cupin_3 domain-containing protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3E5N5_CHLRE)

HSP 1 Score: 123 bits (308), Expect = 1.400e-31
Identity = 51/86 (59.30%), Postives = 61/86 (70.93%), Query Frame = 1
Query:    4 VTKNPNEDKISALGARSWPTWGCGVSKFPWTYEGTETCLILEGEFTVTPDDDREPATVGPGDLCVFPDGMRCTWDVRVPVKKHYRF 261
            V +NP ED + A G RSWPTWGCGVSKFPWTY+  ETC +LEG+  VTP+   EP  +  GD+  FP GM CTWDV+ P+ KHY F
Sbjct:   25 VQRNPAEDVLKAKGVRSWPTWGCGVSKFPWTYQENETCYVLEGDVIVTPNG-GEPVQIKAGDMATFPAGMSCTWDVKAPINKHYNF 109          
BLAST of mRNA_H-elongata_contig10883.716.1 vs. uniprot
Match: A0A564ZJX5_9BACT (Cupin_3 domain-containing protein n=1 Tax=Candidatus Methylomirabilis lanthanidiphila TaxID=2211376 RepID=A0A564ZJX5_9BACT)

HSP 1 Score: 122 bits (306), Expect = 1.540e-31
Identity = 53/88 (60.23%), Postives = 66/88 (75.00%), Query Frame = 1
Query:    1 KVTKNPNEDKISALGARSWPTWGCGVSKFPWTYEGTETCLILEGEFTVTPDDDREPATVGPGDLCVFPDGMRCTWDVRVPVKKHYRFD 264
            ++ +NP++++++AL   +WPTW   VS FPW+Y+ TETC  LEGE  V PDD  EPA VG GDL VFP GM CTWD+R PVKKHYRFD
Sbjct:    4 RIERNPSQERLAALKITTWPTWSKEVSIFPWSYDSTETCYFLEGEVVVMPDD-GEPAQVGKGDLVVFPVGMTCTWDIRRPVKKHYRFD 90          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10883.716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS16_ECTSI7.480e-4981.82Hypothetical conserved protein n=1 Tax=Ectocarpus ... [more]
A0A7S0WR75_9CHLO5.530e-3668.60Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
Q60B25_METCA2.600e-3363.22Cupin_3 domain-containing protein n=5 Tax=Methyloc... [more]
A0A7S2UX72_9STRA2.770e-3360.47Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A3M1FR86_9BACT3.260e-3259.30DUF861 domain-containing protein n=2 Tax=Candidatu... [more]
A0A0A0KVZ0_CUCSA4.140e-3260.23Cupin_3 domain-containing protein n=3 Tax=Benincas... [more]
A0A150FWA4_GONPE1.150e-3161.63Cupin_3 domain-containing protein n=1 Tax=Gonium p... [more]
A0A8J4LY75_9CHLO1.300e-3160.47Cupin_3 domain-containing protein n=4 Tax=Volvox r... [more]
A0A2K3E5N5_CHLRE1.400e-3159.30Cupin_3 domain-containing protein n=3 Tax=Chlamydo... [more]
A0A564ZJX5_9BACT1.540e-3160.23Cupin_3 domain-containing protein n=1 Tax=Candidat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10883contigH-elongata_contig10883:2052..3446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.9
Seed ortholog evalue6.5e-41
Seed eggNOG ortholog2880.D8LS16
KEGG koko:K06995
EggNOG free text desc.Protein of unknown function (DUF861)
EggNOG OGs2S172@2759,COG3450@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical conserved protein
Ec32 orthologEc-08_001770.1
Exons2
Model size921
Cds size267
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10883.716.1prot_H-elongata_contig10883.716.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10883 2706..3446 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929615.5351572-UTR-H-elongata_contig10883:2051..27051622929615.5351572-UTR-H-elongata_contig10883:2051..2705Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10883 2052..2705 -
1691679092.303451-UTR-H-elongata_contig10883:2051..27051691679092.303451-UTR-H-elongata_contig10883:2051..2705Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10883 2052..2705 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929615.5601625-CDS-H-elongata_contig10883:2705..28701622929615.5601625-CDS-H-elongata_contig10883:2705..2870Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10883 2706..2870 -
1691679092.3123972-CDS-H-elongata_contig10883:2705..28701691679092.3123972-CDS-H-elongata_contig10883:2705..2870Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10883 2706..2870 -
1622929615.592405-CDS-H-elongata_contig10883:3344..34461622929615.592405-CDS-H-elongata_contig10883:3344..3446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10883 3345..3446 -
1691679092.3198617-CDS-H-elongata_contig10883:3344..34461691679092.3198617-CDS-H-elongata_contig10883:3344..3446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10883 3345..3446 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10883.716.1

>prot_H-elongata_contig10883.716.1 ID=prot_H-elongata_contig10883.716.1|Name=mRNA_H-elongata_contig10883.716.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
KVTKNPNEDKISALGARSWPTWGCGVSKFPWTYEGTETCLILEGEFTVTP
DDDREPATVGPGDLCVFPDGMRCTWDVRVPVKKHYRFD*
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mRNA from alignment at H-elongata_contig10883:2052..3446-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10883.716.1 ID=mRNA_H-elongata_contig10883.716.1|Name=mRNA_H-elongata_contig10883.716.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1395bp|location=Sequence derived from alignment at H-elongata_contig10883:2052..3446- (Himanthalia elongata Himel1 dioecious)
AAGGTCACCAAGAACCCCAACGAAGACAAAATCAGCGCTCTCGGGGCAAG AAGCTGGCCCACGTGGGGGTGCGGTGTCTCCAAGTTTCCTTGGACGTACG AGGCGAGTCCTCTCTATATATATATCCGTTGAGTCCATACAAGTGGTTTA CCGCTCGCTTCGGCAGAAGCCTCCACGTCATGACTTCAGCTTCCTTCTGA GCACACCCATGTATGGTATTCGCAGTTCTACACCTTTGCGATTGCTACTG TTGGGTCGGTGGAGAGGGGGTAAATGTTGTACGAGCGTCGATACGTGAGA GGTTGGGTTCGCGGCCGAGAAGACTGATAGCCAGCTAATGAGTCAAGACT CGAAACGAGGCAAAATGCCGCTTGCGATTTACTGAACTTTGACGATTGCG TACAAGCTCTCTTTTTCTCGCAAAATCCGGAGGAAAGAAAATGATGCCGA CGTGGATGTTCCCGAAACGGTGCATATTGCTTCGCCTGTAACGCGTGTGG TAGTTGAAGTCTTTGCACGGCTCCTCTAATCCGGAAAACGTACATGTGTC CCTGCACGCAATCCACGTCGCTTCAGGGAACGGAAACCTGCCTCATCTTG GAGGGTGAGTTCACGGTGACTCCCGATGACGACAGAGAGCCCGCGACTGT CGGGCCGGGGGATCTCTGCGTGTTTCCGGACGGGATGAGGTGCACGTGGG ACGTGAGGGTTCCCGTGAAAAAGCACTATAGGTTTGACTAGGAGTCACAG CGCCTGACGGCATCGACTCTTCTTCCCTTCCCCAGAGGGAATCGAACAAC TTTTGTGGGGGACAGGAGGGGTCGCACTCCTCTTACGTGCTGCTGTTGTT TTGAGGACGAAAGAGGAGGCGAGGCAAGAAGGGCGGAAACGCCGTCCGTT AGAAGCGCTAATGATTCCTGTAGAGTTATATAGCTACAAGCTTGCGTCGT TGCGCGGATGACATCCGCAGTGTTGGATTGGAAGAAACATATTCTGTGGG TCAAGAGAGGACCTGCAAACCCCACCCCAACTGTAGAGAGGGGGGAAAAA AGCGTGGAACCAGGTGTTTATTTTCTCCTGGGACGGAGATCCCCCAAGCG ACAGACTGTAAGCTTCTACATGGTGCATTGTTTTTGTGGCACCCGCTTTC CATCGTCAACAACAACAGCAACAGTGCGGCACCCCAGAGCATGGGAGATA AGGCTTTCCGTCGTCAAAAACAACAACAGCAGTGTGGCACGCTTTCCGTC GTCAAGATAATCTTCCGTCACGCTCGCTCGAGCACTCATCGGCGCAACGG CACGCGACTACGTGTCGATGCGCCAGTTGCCACCTACATCGAAGTTGAGA ATAGGCCTAATTTGGTACACGCCGCCACGGTGTGTTGAATCGAAT
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Coding sequence (CDS) from alignment at H-elongata_contig10883:2052..3446-

>mRNA_H-elongata_contig10883.716.1 ID=mRNA_H-elongata_contig10883.716.1|Name=mRNA_H-elongata_contig10883.716.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig10883:2052..3446- (Himanthalia elongata Himel1 dioecious)
AAGGTCACCAAGAACCCCAACGAAGACAAAATCAGCGCTCTCGGGGCAAG
AAGCTGGCCCACGTGGGGGTGCGGTGTCTCCAAGTTTCCTTGGACGTACG
AGAAGGTCACCAAGAACCCCAACGAAGACAAAATCAGCGCTCTCGGGGCA
AGAAGCTGGCCCACGTGGGGGTGCGGTGTCTCCAAGTTTCCTTGGACGTA
CGAGGGAACGGAAACCTGCCTCATCTTGGAGGGTGAGTTCACGGTGACTC
CCGATGACGACAGAGAGCCCGCGACTGTCGGGCCGGGGGATCTCTGCGTG
TTTCCGGACGGGATGAGGTGCACGTGGGACGTGAGGGTTCCCGTGAAAAA
GCACTATAGGTTTGACTAGGGAACGGAAACCTGCCTCATCTTGGAGGGTG
AGTTCACGGTGACTCCCGATGACGACAGAGAGCCCGCGACTGTCGGGCCG
GGGGATCTCTGCGTGTTTCCGGACGGGATGAGGTGCACGTGGGACGTGAG
GGTTCCCGTGAAAAAGCACTATAGGTTTGACTAG
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