mRNA_H-elongata_contig108759.712.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig108759.712.1
Unique NamemRNA_H-elongata_contig108759.712.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig108759.712.1 vs. uniprot
Match: D7FW72_ECTSI (Arginine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW72_ECTSI)

HSP 1 Score: 278 bits (711), Expect = 4.430e-82
Identity = 143/182 (78.57%), Postives = 153/182 (84.07%), Query Frame = 3 
Query:    6 ASIQERMDAGKVTTTPEAAAVSAAEMGYGAVKYFDLRQHPTTSYVFSYDRMLDTRGNTAVYLQFAHARLASILRKAQDELNVDLDALRXXXXXXXXXXXXXXXXXXXXXXFSDVIEACLSDLGPNRLCEYLYTLATKFTDFVTNCRVLGSDEQYSRLLLCDATGVTMRTCFSLLGMKALDRI 551
            ASIQERMD GK+TTT EAAA +AAE+GYGAVKY+DLRQHP+TSYVFSYDRMLDTRGNTAVYLQFAHARLASIL KAQDEL+VD+ AL+                      FSDVIEACL+DLGPNRLCEYLYTLATKFTDFVTNCRVLGSDEQ SRLLLC+ATGVTMR CFSLLGMKALDRI
Sbjct:  725 ASIQERMDEGKMTTTKEAAAAAAAEIGYGAVKYYDLRQHPSTSYVFSYDRMLDTRGNTAVYLQFAHARLASILLKAQDELHVDVTALKASPEKVSVEHESERALAFELLMFSDVIEACLADLGPNRLCEYLYTLATKFTDFVTNCRVLGSDEQTSRLLLCEATGVTMRKCFSLLGMKALDRI 906
[Close]
BLAST of mRNA_H-elongata_contig108759.712.1 vs. uniprot
Match: A0A7S3NN71_9STRA (Arginine--tRNA ligase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NN71_9STRA)

HSP 1 Score: 184 bits (468), Expect = 3.070e-48
Identity = 98/184 (53.26%), Postives = 120/184 (65.22%), Query Frame = 3 
Query:    9 SIQERMDAGKVTTTPEAAAVSAAEMGYGAVKYFDLRQHPTTSYVFSYDRMLDTRGNTAVYLQFAHARLASILRKAQDELNVDLDAL---RXXXXXXXXXXXXXXXXXXXXXXFSDVIEACLSDLGPNRLCEYLYTLATKFTDFVTNCRVLGSDEQYSRLLLCDATGVTMRTCFSLLGMKALDRI 551
            S+ ER+ AGK   + +    +AA +GYGAVKYFDL QHP T+Y+FSYD+ML T GNTAVYL FA+ARLASI+RKA+DE + D+ A                           FSDV+    +D  P RLC+YLY LATK T+FVT C+VLG   QY RLLLC ATG+ MR CF+LLG+K LDRI
Sbjct:  622 SLLERVKAGKCPLSSDEVQQAAAIIGYGAVKYFDLHQHPETNYIFSYDKMLSTSGNTAVYLLFAYARLASIIRKAKDEHHTDIVATLLNNQQPTPLNLQHAKERALAFELTQFSDVVVTVATDYIPARLCDYLYKLATKLTEFVTECKVLGDPRQYHRLLLCHATGIIMRQCFALLGIKPLDRI 805
[Close]
BLAST of mRNA_H-elongata_contig108759.712.1 vs. uniprot
Match: A0A7S2XZ92_9STRA (Arginine--tRNA ligase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ92_9STRA)

HSP 1 Score: 176 bits (447), Expect = 2.090e-47
Identity = 92/162 (56.79%), Postives = 112/162 (69.14%), Query Frame = 3 
Query:    9 SIQERMDAGKVTTTPEAAAVSAAEMGYGAVKYFDLRQHPTTSYVFSYDRMLDTRGNTAVYLQFAHARLASILRKAQDELNVDLDAL-RXXXXXXXXXXXXXXXXXXXXXXFSDVIEACLSDLGPNRLCEYLYTLATKFTDFVTNCRVLGSDEQYSRLLLCDA 491
            S+++R+  GK    P+  A +A+ +GYGA+KYFDL+QHP T+YVFSYDRMLDTRGNTAVYL FAHARLASILRKA +E  VDL  L                        F DV+E+ + +L P+RLCEYLY LATKFT+FVTNC+VL S E  SRLLLC+A
Sbjct:  283 SLEDRVKEGKCLLQPQEIAQAASALGYGAIKYFDLQQHPATAYVFSYDRMLDTRGNTAVYLLFAHARLASILRKAAEEKGVDLGPLVDRALETLHLAHPSERALAFEIMQFGDVVESTVQELMPSRLCEYLYNLATKFTEFVTNCKVLDSPEMNSRLLLCEA 444
[Close]
BLAST of mRNA_H-elongata_contig108759.712.1 vs. uniprot
Match: A0A7S4N223_9STRA (Arginine--tRNA ligase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N223_9STRA)

HSP 1 Score: 164 bits (416), Expect = 2.710e-45
Identity = 86/182 (47.25%), Postives = 115/182 (63.19%), Query Frame = 3 
Query:    9 SIQERMDAGKVTTTPEAAAVSAAEMGYGAVKYFDLRQHPTTSYVFSYDRMLDTRGNTAVYLQFAHARLASILRKAQDELNVDLDAL-RXXXXXXXXXXXXXXXXXXXXXXFSDVIEACLSDLGPNRLCEYLYTLATKFTDFVTNCRVLGSDEQYSRLLLCDATGVTMRTCFSLLGMKALDRI 551
            S+++R++ G    T +    +A  MGYGAVKYFDLR++PTT+Y FSYD+MLDT+GNTA+YL +AHARL SI  KA+ + + D+D L +                      F+DV+E  L DL P  +C+YLY L+    DFVT CRV+GS E  SRLLLC AT + MR CF LL ++ + RI
Sbjct:   41 SLKQRIEDGTANITSDEVHETACAMGYGAVKYFDLRRNPTTNYKFSYDQMLDTKGNTAIYLLYAHARLESICAKAKVQHDKDVDELIKSGKAQISIVHPSERKLAMTLRMFADVVEETLDDLYPYHICDYLYALSGAVADFVTQCRVMGSPEMESRLLLCRATAIVMRQCFDLLAIRHVMRI 222
[Close]
BLAST of mRNA_H-elongata_contig108759.712.1 vs. uniprot
Match: A0A812RTD8_SYMMI (Arginine--tRNA ligase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RTD8_SYMMI)

HSP 1 Score: 161 bits (407), Expect = 1.980e-44
Identity = 82/183 (44.81%), Postives = 118/183 (64.48%), Query Frame = 3 
Query:    9 SIQERMDAGKVTTTPEAAAVSAAEMGYGAVKYFDLRQHPTTSYVFSYDRMLDTRGNTAVYLQFAHARLASILRKAQDELNVD--LDALRXXXXXXXXXXXXXXXXXXXXXXFSDVIEACLSDLGPNRLCEYLYTLATKFTDFVTNCRVLGSDEQYSRLLLCDATGVTMRTCFSLLGMKALDRI 551
            ++QER + GK + T +    ++ ++GYGAVKYFDL+Q+ TT+Y+F+YD+ML T G+TAVYL FA+AR+ASILRK +++ N D   +++                       F D I   + DL PNRLC+Y+  L+ KFT+FVT C VL SDE +SRL+LC+AT   +   F LLG++AL +I
Sbjct:    4 ALQERKEEGKTSLTADEIVDASTKIGYGAVKYFDLKQNCTTNYIFNYDKMLSTNGDTAVYLLFAYARVASILRKGKEDRNFDPSSESMERLLATITVEHPAERQLAFELLQFGDCIRVAVKDLMPNRLCDYIKELSVKFTEFVTKCHVLNSDECHSRLILCEATRRVLEKSFHLLGIEALQKI 186
[Close]
BLAST of mRNA_H-elongata_contig108759.712.1 vs. uniprot
Match: H3HAC8_PHYRM (Arginine--tRNA ligase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HAC8_PHYRM)

HSP 1 Score: 163 bits (412), Expect = 2.120e-44
Identity = 92/182 (50.55%), Postives = 116/182 (63.74%), Query Frame = 3 
Query:    6 ASIQERMDAGKVTTTPEAAAVSAAEMGYGAVKYFDLRQHPTTSYVFSYDRMLDTRGNTAVYLQFAHARLASILRKAQDELNVDLDALRXXXXXXXXXXXXXXXXXXXXXXFSDVIEACLSDLGPNRLCEYLYTLATKFTDFVTNCRVLGSDEQYSRLLLCDATGVTMRTCFSLLGMKALDRI 551
            A + ER++AG+ +   E    +A ++GYGAVKYFDLRQ PT++Y+FS+DRML T G+TAVYL FA+ARL+SI+RK+     VD+ AL                         DVI     DL  NRLC YLYT++ K   F T CRVLGS+EQ SRLLLCDAT   M+TCFSLLG+  LD+I
Sbjct:   73 AQLLERIEAGQTSLPIEEVDAAAEKLGYGAVKYFDLRQSPTSNYIFSFDRMLSTNGDTAVYLTFAYARLSSIIRKS----GVDMAALVEQQQKQGDVLKPEDPDGAGP----DVIVFINKDLNSNRLCSYLYTISEKVQTFATACRVLGSEEQSSRLLLCDATLKVMKTCFSLLGIDPLDQI 246
[Close]
BLAST of mRNA_H-elongata_contig108759.712.1 vs. uniprot
Match: K0R2R2_THAOC (Arginine--tRNA ligase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R2R2_THAOC)

HSP 1 Score: 173 bits (438), Expect = 4.440e-44
Identity = 87/182 (47.80%), Postives = 119/182 (65.38%), Query Frame = 3 
Query:    6 ASIQERMDAGKVTTTPEAAAVSAAEMGYGAVKYFDLRQHPTTSYVFSYDRMLDTRGNTAVYLQFAHARLASILRKAQDELNVDLDALRXXXXXXXXXXXXXXXXXXXXXXFSDVIEACLSDLGPNRLCEYLYTLATKFTDFVTNCRVLGSDEQYSRLLLCDATGVTMRTCFSLLGMKALDRI 551
            AS+ ER+  GK   T +    +A  MGYGAVKYFDLR++PT++Y+FSYDRMLDT+GNTA+YL +AHARL SI+ +A+ +  V++D L                       F+D IE  L DL P  +C+++Y L+   +DFVT C+VLG+DE  SR+LLC AT +TMR CF LLG++ + RI
Sbjct:  649 ASLNERIAEGKAGITKDQVHETACAMGYGAVKYFDLRRNPTSNYIFSYDRMLDTKGNTAIYLLYAHARLESIISRAEADHGVNVDELIKGGQAIVLGHKSERNLALHLEIFADCIEETLKDLYPYHICDFVYNLSIAASDFVTQCKVLGTDEMQSRVLLCRATAITMRQCFQLLGIRHVMRI 830
[Close]
BLAST of mRNA_H-elongata_contig108759.712.1 vs. uniprot
Match: B8CBA7_THAPS (Arginine--tRNA ligase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBA7_THAPS)

HSP 1 Score: 167 bits (424), Expect = 2.970e-43
Identity = 85/182 (46.70%), Postives = 117/182 (64.29%), Query Frame = 3 
Query:    9 SIQERMDAGKVTTTPEAAAVSAAEMGYGAVKYFDLRQHPTTSYVFSYDRMLDTRGNTAVYLQFAHARLASILRKAQDELNVDLDAL-RXXXXXXXXXXXXXXXXXXXXXXFSDVIEACLSDLGPNRLCEYLYTLATKFTDFVTNCRVLGSDEQYSRLLLCDATGVTMRTCFSLLGMKALDRI 551
            S++ER   GK          +A+ MGYGAVKYFDLR++PT++Y+FSYDRMLDT+GNTA+YL +AHARL SI+ K + E  VD+D L +                      F+D +E  L+DL P  +C+++Y L+   ++FVT C+VLGS E  SRLLLC AT ++MR CF LLG++ + RI
Sbjct:  372 SLKERATDGKAAVDDAEIHATASAMGYGAVKYFDLRRNPTSNYIFSYDRMLDTKGNTAIYLLYAHARLESIISKGKAEFGVDVDELIKAGKAKIILAHKSERNLGLHLEFFADAVEETLNDLFPYHICDFVYALSNAASEFVTQCKVLGSPEMESRLLLCRATAISMRQCFDLLGIRHVYRI 553
[Close]
BLAST of mRNA_H-elongata_contig108759.712.1 vs. uniprot
Match: A0A7S3H4P3_9STRA (Arginine--tRNA ligase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H4P3_9STRA)

HSP 1 Score: 170 bits (431), Expect = 5.210e-43
Identity = 96/185 (51.89%), Postives = 119/185 (64.32%), Query Frame = 3 
Query:    9 SIQERMDAGKVTTTPEAAAVSAAEMGYGAVKYFDLRQHPTTSYVFSYDRMLDTRGNTAVYLQFAHARLASILRKAQDELNVDLDALRXXXXXXXXXXXXXXXXXXXXXX-FSDVIEACLSDLGPNRLCEYLYTLATKFTDFVTNCRVLGSDE---QYSRLLLCDATGVTMRTCFSLLGMKALDRI 551
            S++ R + GK     E    +A  +GYGAVKYFDL+Q+P ++YVFSYDRMLDT+G+TAVYL FA+ARLASILRKA+DE NVD+  L                          DVI++ L+DL PNRLC+YL TLA  FTDFVT C VL +D     +SRLLLC+AT   M  CF LLG+  L+RI
Sbjct:  736 SLRVRAEEGKSALQGEELENAARIIGYGAVKYFDLKQNPVSNYVFSYDRMLDTKGDTAVYLLFAYARLASILRKAKDERNVDMAPLHLQAQSLLSVAHPAERALAFELLQLGDVIKSVLADLLPNRLCDYLKTLAVAFTDFVTKCHVLNADNAEVMHSRLLLCEATRRVMAQCFQLLGIGTLERI 920
[Close]
BLAST of mRNA_H-elongata_contig108759.712.1 vs. uniprot
Match: F0XWA2_AURAN (Arginine--tRNA ligase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWA2_AURAN)

HSP 1 Score: 167 bits (423), Expect = 6.350e-43
Identity = 87/181 (48.07%), Postives = 111/181 (61.33%), Query Frame = 3 
Query:    9 SIQERMDAGKVTTTPEAAAVSAAEMGYGAVKYFDLRQHPTTSYVFSYDRMLDTRGNTAVYLQFAHARLASILRKAQDELNVDLDALRXXXXXXXXXXXXXXXXXXXXXXFSDVIEACLSDLGPNRLCEYLYTLATKFTDFVTNCRVLGSDEQYSRLLLCDATGVTMRTCFSLLGMKALDRI 551
            S+ +R+  GK    P     +AA +GYGAVKYFDL QHP+T+Y FSYD+ML T GNTAVYL FAHARLASI+ KA++   VD  A                        F++V+ +   D  P R+C+YLY +ATKFT+FVT C+VL       RL+LC+ATGV MR CF LLG+  L +I
Sbjct:  404 SLSDRVAEGKCALPPAEVKRAAAAIGYGAVKYFDLHQHPSTNYKFSYDKMLSTSGNTAVYLLFAHARLASIVAKARETRKVDAKAAAAGAALVLTQHAKERALAFELTQFAEVVLSVADDFLPVRICDYLYKIATKFTEFVTECKVLDDPRMAERLVLCEATGVVMRKCFDLLGITYLMQI 584
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108759.712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW72_ECTSI4.430e-8278.57Arginine--tRNA ligase n=2 Tax=Ectocarpus TaxID=287... [more]
A0A7S3NN71_9STRA3.070e-4853.26Arginine--tRNA ligase n=1 Tax=Aureoumbra lagunensi... [more]
A0A7S2XZ92_9STRA2.090e-4756.79Arginine--tRNA ligase (Fragment) n=1 Tax=Fibrocaps... [more]
A0A7S4N223_9STRA2.710e-4547.25Arginine--tRNA ligase n=1 Tax=Odontella aurita Tax... [more]
A0A812RTD8_SYMMI1.980e-4444.81Arginine--tRNA ligase n=1 Tax=Symbiodinium microad... [more]
H3HAC8_PHYRM2.120e-4450.55Arginine--tRNA ligase n=1 Tax=Phytophthora ramorum... [more]
K0R2R2_THAOC4.440e-4447.80Arginine--tRNA ligase n=1 Tax=Thalassiosira oceani... [more]
B8CBA7_THAPS2.970e-4346.70Arginine--tRNA ligase n=1 Tax=Thalassiosira pseudo... [more]
A0A7S3H4P3_9STRA5.210e-4351.89Arginine--tRNA ligase n=1 Tax=Spumella elongata Ta... [more]
F0XWA2_AURAN6.350e-4348.07Arginine--tRNA ligase (Fragment) n=1 Tax=Aureococc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig108759contigH-elongata_contig108759:2..1896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score269.2
Seed ortholog evalue1.3e-69
Seed eggNOG ortholog2880.D7FW72
Preferred nameRARS
KEGG rclassRC00055,RC00523
KEGG koko:K01887
KEGG ReactionR03646
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0000003,GO:0000049,GO:0000122,GO:0000166,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004812,GO:0004814,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0006082,GO:0006139,GO:0006355,GO:0006357,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0007568,GO:0008144,GO:0008150,GO:0008152,GO:0008340,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010154,GO:0010259,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0017076,GO:0017101,GO:0019219,GO:0019222,GO:0019538,GO:0019752,GO:0022414,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031406,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034618,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045892,GO:0045934,GO:0046483,GO:0048316,GO:0048518,GO:0048519,GO:0048523,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.arginyl-tRNA aminoacylation
EggNOG OGsCOG0018@1,KOG4426@2759
EC6.1.1.19
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029
Hectar predicted targeting categoryother localisation
Exons3
Model size1165
Cds size531
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig108759.712.1prot_H-elongata_contig108759.712.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig108759 25..1285 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929615.2355464-UTR-H-elongata_contig108759:1..241622929615.2355464-UTR-H-elongata_contig108759:1..24Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig108759 2..24 +
1691679092.1567283-UTR-H-elongata_contig108759:1..241691679092.1567283-UTR-H-elongata_contig108759:1..24Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig108759 2..24 +
1622929615.2930193-UTR-H-elongata_contig108759:1285..18961622929615.2930193-UTR-H-elongata_contig108759:1285..1896Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig108759 1286..1896 +
1691679092.2074804-UTR-H-elongata_contig108759:1285..18961691679092.2074804-UTR-H-elongata_contig108759:1285..1896Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig108759 1286..1896 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929615.2535799-CDS-H-elongata_contig108759:24..1461622929615.2535799-CDS-H-elongata_contig108759:24..146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108759 25..146 +
1691679092.1778634-CDS-H-elongata_contig108759:24..1461691679092.1778634-CDS-H-elongata_contig108759:24..146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108759 25..146 +
1622929615.2649353-CDS-H-elongata_contig108759:293..5011622929615.2649353-CDS-H-elongata_contig108759:293..501Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108759 294..501 +
1691679092.1901658-CDS-H-elongata_contig108759:293..5011691679092.1901658-CDS-H-elongata_contig108759:293..501Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108759 294..501 +
1622929615.2799296-CDS-H-elongata_contig108759:1084..12851622929615.2799296-CDS-H-elongata_contig108759:1084..1285Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108759 1085..1285 +
1691679092.1985815-CDS-H-elongata_contig108759:1084..12851691679092.1985815-CDS-H-elongata_contig108759:1084..1285Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108759 1085..1285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig108759.712.1

>prot_H-elongata_contig108759.712.1 ID=prot_H-elongata_contig108759.712.1|Name=mRNA_H-elongata_contig108759.712.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=177bp
MDAGKVTTTPEAAAVSAAEMGYGAVKYFDLRQHPTTSYVFSYDRMLDTRG
NTAVYLQFAHARLASILRKAQDELNVDLDALRASSDQVLVEHDAERALAF
ELLVFSDVIEACLSDLGPNRLCEYLYTLATKFTDFVTNCRVLGSDEQYSR
LLLCDATGVTMRTCFSLLGMKALDRI*
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mRNA from alignment at H-elongata_contig108759:2..1896+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig108759.712.1 ID=mRNA_H-elongata_contig108759.712.1|Name=mRNA_H-elongata_contig108759.712.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1895bp|location=Sequence derived from alignment at H-elongata_contig108759:2..1896+ (Himanthalia elongata Himel1 dioecious)
ATTAGGCATCAATTCAAGAGAGAATGGATGCCGGGAAGGTCACCACAACG
CCAGAGGCTGCCGCGGTGTCGGCTGCAGAGATGGGTTACGGCGCTGTCAA
GTATTTCGACCTACGGCAACACCCGACTACCTCCTATGTCTTCAGGTACG
CGTGCTTGGCGATAGATTTGGATAAGTGGGATGTTTAGCAATCCACGTTT
TTTGTACCGCTCTCTTTTTGTGGTAAAGCGCGATATTTCCTTCAAATGGA
TCTCTCAATAATTTCCCTTCTTGCTCCCACATCGCCCTCCAGCTACGATC
GCATGTTGGACACGAGAGGTAACACCGCAGTGTATTTGCAGTTCGCCCAC
GCTCGACTGGCCTCCATTCTTCGAAAAGCGCAAGATGAGCTAAATGTGGA
CCTAGACGCTCTCAGGGCGTCGTCAGATCAGGTGTTGGTTGAGCACGACG
CCGAACGAGCCCTAGCGTTCGAGCTTCTGGTATTCTCTGACGTCATCGAG
GTGAGTTATTAATAGGAAATATAATAAATTGTAAATATTATAAACCGCGG
GAATGTGCTCAAAGCCTCATCGTCCCTTGTCCCCCGCCATGTGGGACATC
ACCCGAGCTAGGCTTCTTTCGCAACCTCACCTTTCGCTGTAATTCCTTCA
CCTCAACTCCCCTCAAAGGGATTCAACCATTTTGTTTTAGCTGTTTTTCG
ACCAATTCTCAGCTTTCATGTGTTGTCATCCCATTTGATTCTGGACGTCA
AACTTGCGAACGCACCAGCCGGCGTGACGTCACACAGTATAGGGGGAAGG
TCGCACATGATTTCTTTGCCTCCTTCTGCGGTGCTTGCCTTAACGTTTTA
TCGCGATATGATTTAGCCGTCCTTCGTTTTCCCTCGTCGGCCGTGAAGTC
GAATTTTGTGTACCCACAAAACAGTCGTTCTCTACTTGTTGGGCATGATG
TGGGAGAAAATCCCAGTTCGTGTGATTGCGCCGAGATTCGAACTCATGTC
GAAACTTCGTAAGGTTTCGAGGATATCAACTGAACCACCAGGGCGTTTCA
TATCCGCGACTTATATTTCCCCTATTCCTCCAGGCATGCCTATCGGATCT
TGGTCCTAACCGCCTCTGTGAATACCTCTACACGCTGGCTACAAAGTTCA
CAGACTTCGTGACCAACTGTCGGGTGCTGGGATCGGATGAGCAGTACAGC
CGGCTGCTGCTTTGTGACGCAACGGGAGTCACCATGCGCACGTGCTTCAG
CCTTCTCGGCATGAAGGCGTTGGACCGAATCTAGAGCCCCAGAAGTAGCC
TATCCCCGTACGTACCGGTGAAATGTTTCGAAGATGACGTTCCTCCGGCT
TGGTGCAGCCCATGTTTTTGATCCAATACATTCTTGCGCCGCAAACGCCG
AAGAGCTTTTAAGTTTGTGTTGTGGCGAAGGGCAGCGACATTACCAGATC
GAAGGGGCAAGCCGTTAAGAAGTTGACAGCGCGTCTGGACTTGGAAATTA
GAACGACAAGCTTGATCTAAATTTCAACGTTTTTTGCTGCTCCTAAAGCT
CTTTTTTATTTTTTATTTTTTATTTTTTATGCTCCATCCCTGACCTTGCA
GTCTTCAGGGTAATTCTTAACGAAGGTACCAAACTCCCCTCGTTTTGTTG
TTAACGTAATATGAAGAGGTTTGATGGAGGGAGACTCGTAGAGTCGTTAT
GATCTGTGGTCAGACGTACGAAGGGTACTTTCGTTGATATTAAGATATTA
CTCTAACATATTACTGTAAATATTACTCTAACATATTAACCGATCGGGCC
CCAATAAAAAAATACCGGTACTACTGTTGTATCTAGTCGTGGTCTGCTAA
CCGGTGGAAAAAAAGGAAAACATGACGAAAATATAAATATCAAAA
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Coding sequence (CDS) from alignment at H-elongata_contig108759:2..1896+

>mRNA_H-elongata_contig108759.712.1 ID=mRNA_H-elongata_contig108759.712.1|Name=mRNA_H-elongata_contig108759.712.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1062bp|location=Sequence derived from alignment at H-elongata_contig108759:2..1896+ (Himanthalia elongata Himel1 dioecious)
ATGGATGCCGGGAAGGTCACCACAACGCCAGAGGCTGCCGCGGTGTCGGC
TGCAGAGATGGGTTACGGCGCTGTCAAGTATTTCGACCTACGGCAACACC
CGACTACCTCCTATGTCTTCAGATGGATGCCGGGAAGGTCACCACAACGC
CAGAGGCTGCCGCGGTGTCGGCTGCAGAGATGGGTTACGGCGCTGTCAAG
TATTTCGACCTACGGCAACACCCGACTACCTCCTATGTCTTCAGCTACGA
TCGCATGTTGGACACGAGAGGTAACACCGCAGTGTATTTGCAGTTCGCCC
ACGCTCGACTGGCCTCCATTCTTCGAAAAGCGCAAGATGAGCTAAATGTG
GACCTAGACGCTCTCAGGGCGTCGTCAGATCAGGTGTTGGTTGAGCACGA
CGCCGAACGAGCCCTAGCGTTCGAGCTTCTGGTATTCTCTGACGTCATCG
AGCTACGATCGCATGTTGGACACGAGAGGTAACACCGCAGTGTATTTGCA
GTTCGCCCACGCTCGACTGGCCTCCATTCTTCGAAAAGCGCAAGATGAGC
TAAATGTGGACCTAGACGCTCTCAGGGCGTCGTCAGATCAGGTGTTGGTT
GAGCACGACGCCGAACGAGCCCTAGCGTTCGAGCTTCTGGTATTCTCTGA
CGTCATCGAGGCATGCCTATCGGATCTTGGTCCTAACCGCCTCTGTGAAT
ACCTCTACACGCTGGCTACAAAGTTCACAGACTTCGTGACCAACTGTCGG
GTGCTGGGATCGGATGAGCAGTACAGCCGGCTGCTGCTTTGTGACGCAAC
GGGAGTCACCATGCGCACGTGCTTCAGCCTTCTCGGCATGAAGGCGTTGG
ACCGAATCTAGGCATGCCTATCGGATCTTGGTCCTAACCGCCTCTGTGAA
TACCTCTACACGCTGGCTACAAAGTTCACAGACTTCGTGACCAACTGTCG
GGTGCTGGGATCGGATGAGCAGTACAGCCGGCTGCTGCTTTGTGACGCAA
CGGGAGTCACCATGCGCACGTGCTTCAGCCTTCTCGGCATGAAGGCGTTG
GACCGAATCTAG
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