mRNA_H-elongata_contig10875.709.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig10875.709.1 vs. uniprot
Match: D7FPF7_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF7_ECTSI) HSP 1 Score: 265 bits (678), Expect = 1.160e-80 Identity = 142/277 (51.26%), Postives = 188/277 (67.87%), Query Frame = 2
Query: 446 ATIGPIAILGALAVIYRFAVIRNGHSIRAIRVTKNKHLSVALFLVFLLYSSISYTIFQTFACDLMDSGVAYLRADYSLECWTDIHTYFMTYARIMVLVYPVGIPAVFAWWLFTNRYRIENVDAPAWTGFQSGPERFYSVDAGKTLWGPYKRNRYYYEVVECSRRVVLAGLAVFIYPGSSAQIAIEVLFAVLFYAVFEILSPFANPLEMWLYRSGAWIIYLSMYLALLLR------ESYSNNVFAWLLIAVHGCMALVVIIYAFWQRFHV*EKSSLVA 1258
ATIGP+ +LGALA+ Y + RN HS I+ K+KHLS+ALF++F++YSS+S+ IFQTF C+ +D GV YLRADYSL C TD HT YA +M+ VYP GIPA F WL +NR+ + VDA G + + ++ + LW PYK RYY+EVVEC RR+ L GLAVFIYPGS+AQ+A+EV+FA F + ++LSPFA+PL+ WLYRSGAW+I++SM+L LLL+ +S S +FA LLI+ H M L + + A K SLVA
Sbjct: 124 ATIGPLVVLGALALTYAVSRSRNRHSPAGIQTAKHKHLSIALFIMFVVYSSVSFNIFQTFVCETLDDGVEYLRADYSLVCSTDTHTAMKVYAGLMIFVYPFGIPAFFTLWLVSNRHDLVKVDANG--GSTATAKSLGNLQPMRDLWAPYKPRRYYFEVVECGRRIALTGLAVFIYPGSAAQVALEVVFAAFFIGISDVLSPFADPLDAWLYRSGAWVIFISMFLTLLLKVDASDEDSQSQELFAKLLISAHVGMVLAIAVQAVLS-----VKGSLVA 393
BLAST of mRNA_H-elongata_contig10875.709.1 vs. uniprot
Match: A0A6H5KHA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHA3_9PHAE) HSP 1 Score: 247 bits (630), Expect = 1.720e-73 Identity = 136/263 (51.71%), Postives = 177/263 (67.30%), Query Frame = 2
Query: 437 VCLATIGPIAILGALAVIYRFAVIRNGHSIRAIRVTKNKHLSVALFLVFLLYSSISYTIFQTFACDLMDSGVAYLRADYSLECWTDIHTYFMTYARIMVLVYPVGIPAVFAWWLFTNRYRIENVDAPAWTGFQSGPERFYSVDAGKTLWGPYKRNRYYYEVVECSRRVVLAGLAVFIYPGSSAQIAIEVLFAVLFYAVFEILSPFANPLEMWLYRSGAWIIYLSMYLALLLR------ESYSNNVFAWLLIAVHGCMALVVII 1207
+ +TI P+AILG LA + A N HS +R +KHLS+ALF+VF +YSS+S+TIFQTF C+ +D V YLRADYSL C T HT YA +MVLVYP+GIPAVFAWWL +NR + + G + PE + K LW PYK RY+YE+VEC RR+VL GLAVF++PG++AQ+AIEV FA VFE+L+PF +P++ WLYRSGA +++ SMYLALLL+ S S VFA +L+A H M L V++
Sbjct: 101 LAFSTIVPLAILGGLAAKHAIAKRNNRHSQVGMREATDKHLSIALFIVFAIYSSVSFTIFQTFMCETLDDEVEYLRADYSLTCSTSTHTIMEVYAGLMVLVYPIGIPAVFAWWLASNRKDLVQDRS----GGTTTPENLRPM---KDLWEPYKPRRYFYELVECGRRIVLTGLAVFLFPGTAAQVAIEVAFAAGLLVVFEVLAPFVDPMDAWLYRSGALVVFFSMYLALLLKVDASDENSESQQVFAAVLVAAHVSMVLAVLL 356
BLAST of mRNA_H-elongata_contig10875.709.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE) HSP 1 Score: 255 bits (651), Expect = 1.110e-71 Identity = 132/261 (50.57%), Postives = 176/261 (67.43%), Query Frame = 2
Query: 449 TIGPIAILGALAVIYRFAVIRNGHSIRAIRVTKNKHLSVALFLVFLLYSSISYTIFQTFACDLMDSGVAYLRADYSLECWTDIHTYFMTYARIMVLVYPVGIPAVFAWWLFTNRYRIENVDAPAWTGFQSGPERFYSVDAGKTLWGPYKRNRYYYEVVECSRRVVLAGLAVFIYPGSSAQIAIEVLFAVLFYAVFEILSPFANPLEMWLYRSGAWIIYLSMYLALLLR------ESYSNNVFAWLLIAVHGCMALVVIIYA 1213
T+GP+ + G LA Y + RN HS ++ K+KHLS+ALF+ F++YSS+S+ IFQTF C+ +D GV YLRADYSL C T +HT M YA +M+LVYPVGIP V++WWL +NR+ + V G R + + LW YK RYY+EV+EC RR+ L GLA F+ P S+AQ+AIEV+ A +F AV ++LSPFA+P + WLYR+GAWII+ SMYLALLL+ +S S FA +LIA H M LVV++ A
Sbjct: 801 TVGPLVVFGGLAATYAISRSRNRHSPAGMQAAKSKHLSIALFISFVVYSSVSFNIFQTFVCETLDDGVTYLRADYSLTCSTGVHTAMMAYAGLMILVYPVGIPTVYSWWLLSNRHDLVKVGTSG--NCLGGAPRLDHLQPMRDLWSSYKPRRYYFEVLECGRRIALTGLAAFLLPDSAAQVAIEVVLAAIFMAVSDVLSPFADPFDGWLYRTGAWIIFFSMYLALLLKVDASDEDSQSQAAFAKVLIAAHVGMVLVVLVQA 1059
BLAST of mRNA_H-elongata_contig10875.709.1 vs. uniprot
Match: D7G8S0_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8S0_ECTSI) HSP 1 Score: 236 bits (603), Expect = 1.140e-70 Identity = 124/259 (47.88%), Postives = 168/259 (64.86%), Query Frame = 2
Query: 446 ATIGPIAILGALAVIYRFAVIRNGHSIRAIRVTKNKHLSVALFLVFLLYSSISYTIFQTFACDLMDSGVAYLRADYSLECWTDIHTYFMTYARIMVLVYPVGIPAVFAWWLFTNRYRIENVDAPAWTGFQSGPERFYSVDAGKTLWGPYKRNRYYYEVVECSRRVVLAGLAVFIYPGSSAQIAIEVLFAVLFYAVFEILSPFANPLEMWLYRSGAWIIYLSMYLALLL---RESYSNNVFAWLLIAVHGCMALVVIIYA 1213
ATI P+ + GA AV Y + RN HS ++ K+KHLS+ LF++F++YSS+ + IFQTF C+ +D+G+ YLRADYSL C+T +H M YA +M+ VYPVGIPA +AWWL R+ + V AP F + + LW PYK +RYY+EVVEC R+ L GLA F+ P S+AQ AIEV+ A +F AV ++LSPF +P + WLYR G WI SMYLAL+ ++ S VFA +LIA H M V+++ A
Sbjct: 89 ATICPLVVFGAQAVTYTVSKSRNRHSPAGMQAAKSKHLSITLFIMFVVYSSVPFNIFQTFVCERLDTGMDYLRADYSLTCYTGVHKAMMVYAGLMIFVYPVGIPAFYAWWLLFIRHYLVKVGAP--NNFLERVPELDHLQPMRDLWAPYKPHRYYFEVVECGHRIALTGLAAFLLPNSAAQAAIEVVLAAIFVAVSDVLSPFVDPFDAWLYRIGGWITCFSMYLALVDVSDEDNQSQAVFAKVLIAAHAGMVAVIVVQA 345
BLAST of mRNA_H-elongata_contig10875.709.1 vs. uniprot
Match: D7FUB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB5_ECTSI) HSP 1 Score: 236 bits (602), Expect = 1.080e-69 Identity = 132/263 (50.19%), Postives = 173/263 (65.78%), Query Frame = 2
Query: 437 VCLATIGPIAILGALAVIYRFAVIRNGHSIRAIRVTKNKHLSVALFLVFLLYSSISYTIFQTFACDLMDSGVAYLRADYSLECWTDIHTYFMTYARIMVLVYPVGIPAVFAWWLFTNRYRIENVDAPAWTGFQSGPERFYSVDAGKTLWGPYKRNRYYYEVVECSRRVVLAGLAVFIYPGSSAQIAIEVLFAVLFYAVFEILSPFANPLEMWLYRSGAWIIYLSMYLALLLR------ESYSNNVFAWLLIAVHGCMALVVII 1207
+ +T+ P+AILG LA + A N HS +R +KHLS+ALF+VF YSS+S+TIFQTF C+ +D V YLRADYSL C T HT YA +MVLVYP+GIPAVFAWWL +NR + + SG ++ K LW PYK RY+YE+VEC RR+ L GLAVF++PG++AQ+AIEV FA VFE+L+PF +P++ LYRSGA +++ SMYLALLL+ S S VFA +L+A H M L V++
Sbjct: 79 LAFSTLLPLAILGGLAATHAIAKRNNRHSQVGMREATDKHLSIALFIVFATYSSVSFTIFQTFMCETLDDEVEYLRADYSLTCSTSTHTIMEVYAGLMVLVYPIGIPAVFAWWLASNRKDLVRERS-------SGTATPENLRPMKDLWEPYKPRRYFYELVECGRRIGLTGLAVFLFPGTAAQVAIEVAFAAGLLVVFEVLAPFVDPVDAGLYRSGALVVFYSMYLALLLKVDASDESSESQQVFAAVLVAAHVSMVLAVLL 334
BLAST of mRNA_H-elongata_contig10875.709.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI) HSP 1 Score: 248 bits (633), Expect = 9.330e-69 Identity = 134/265 (50.57%), Postives = 176/265 (66.42%), Query Frame = 2
Query: 428 FTSVCLATIGPIAILGALAVIYRFAVIRNGHSIRAIRVTKNKHLSVALFLVFLLYSSISYTIFQTFACDLMDSGVAYLRADYSLECWTDIHTYFMTYARIMVLVYPVGIPAVFAWWLFTNRYRIENVDAPAWTGFQSGPERFYSVDAGKTLWGPYKRNRYYYEVVECSRRVVLAGLAVFIYPGSSAQIAIEVLFAVLFYAVFEILSPFANPLEMWLYRSGAWIIYLSMYLALLLR------ESYSNNVFAWLLIAVHGCMALVVI 1204
+ + +ATIGP+ +LG L Y A RN H A+R + +HLSV LF++F++Y+++SYTIF+TF CD +D G +YLRADYSL C T +HT + YA + VLVYPVGIP VF WWLF NR+ ++ D +S E + D LW PYK + YYYEVVEC RR+ L G AVFIYP SSAQ+AI +L A +F V EILSPFA P+EMWLYR+G ++++ SMYLALLLR S VF+ +++ H M LVV+
Sbjct: 774 YDRLLMATIGPVLVLGLLGCTYLVARRRNRHCEEAMRDVQRRHLSVTLFVMFVIYAAVSYTIFETFVCDTLDDGNSYLRADYSLTCDTPLHTAYRVYAGLAVLVYPVGIPCVFGWWLFKNRHELKQEDR------ESQAELRPAAD----LWEPYKPSAYYYEVVECFRRIALTGFAVFIYPDSSAQVAIVLLLAAVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDERDQSQEVFSGVIVIAHVAMFLVVV 1028
BLAST of mRNA_H-elongata_contig10875.709.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE) HSP 1 Score: 247 bits (631), Expect = 1.710e-68 Identity = 130/266 (48.87%), Postives = 174/266 (65.41%), Query Frame = 2
Query: 428 FTSVCLATIGPIAILGALAVIYRFAVIRNGHSIRAIRVTKNKHLSVALFLVFLLYSSISYTIFQTFACDLMDSGVAYLRADYSLECWTDIHTYFMTYARIMVLVYPVGIPAVFAWWLFTNRYRIENVDAPAWTGFQSGPERFYSVDAGKTLWGPYKRNRYYYEVVECSRRVVLAGLAVFIYPGSSAQIAIEVLFAVLFYAVFEILSPFANPLEMWLYRSGAWIIYLSMYLALLLR------ESYSNNVFAWLLIAVHGCMALVVII 1207
+ + +ATIGP+ +LG L Y A RN H A+R + +HLSV LF++F++Y+++SYTIF+TF CD +D G +YLRADYSL C T +HT + YA + VLVYPVGIP +F WWLF NR+ ++ D + + LW PYK + YYYEVVEC RR+ L G AVFIYP SSAQ+AI +L A +F V EILSPFA P+EMWLYR+G ++++ SMYLALLLR S VF+ +++ H M LVV++
Sbjct: 755 YDRLLMATIGPVLVLGLLGCTYVVARRRNRHCEEAMRDVQRRHLSVTLFVMFVIYAAVSYTIFETFVCDTLDDGNSYLRADYSLTCDTPLHTAYRVYAGLAVLVYPVGIPCIFGWWLFKNRHELKQEDREGQAELRPAAD----------LWEPYKPSAYYYEVVECFRRIALTGFAVFIYPDSSAQVAIVLLLAAVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDERDQSQEVFSGVIVMAHVAMFLVVVV 1010
BLAST of mRNA_H-elongata_contig10875.709.1 vs. uniprot
Match: D7FTU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU5_ECTSI) HSP 1 Score: 239 bits (611), Expect = 7.520e-66 Identity = 129/266 (48.50%), Postives = 173/266 (65.04%), Query Frame = 2
Query: 428 FTSVCLATIGPIAILGALAVIYRFAVIRNGHSIRAIRVTKNKHLSVALFLVFLLYSSISYTIFQTFACDLMDSGVAYLRADYSLECWTDIHTYFMTYARIMVLVYPVGIPAVFAWWLFTNRYRIENVDAPAWTGFQSGPERFYSVDAGKTLWGPYKRNRYYYEVVECSRRVVLAGLAVFIYPGSSAQIAIEVLFAVLFYAVFEILSPFANPLEMWLYRSGAWIIYLSMYLALLLR------ESYSNNVFAWLLIAVHGCMALVVII 1207
+ + L TI P +LG L Y A+ V K++HLSVALF++F++Y+++SYTIF+TF CD +D G +YLR+DYSL C T+ HT + YA +M+LVYPVGIP VF WWLF +R+ ++ Q G ER + LW PYK + YYYEVVEC RR+ L G AVFIYP SSAQ+AI +L A++F V E LSPFA P+EMWLYR+G ++++ SMYLALLLR + S VF+ +L+ H M LVV++
Sbjct: 779 YDRLLLTTICPAVVLGLLGCTYL-----------AMGVVKHRHLSVALFIMFVIYATVSYTIFETFVCDPLDDGNSYLRSDYSLTCDTETHTAYRVYAGLMILVYPVGIPCVFGWWLFKHRHELK----------QEGRERRAVLKPAADLWEPYKPSTYYYEVVECFRRIALTGFAVFIYPDSSAQVAIVLLLAIVFMVVSEFLSPFARPVEMWLYRTGHYVVFASMYLALLLRVDVSDERNQSQEVFSGVLVIAHAAMLLVVVL 1023
BLAST of mRNA_H-elongata_contig10875.709.1 vs. uniprot
Match: A0A6H5L0E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0E1_9PHAE) HSP 1 Score: 222 bits (565), Expect = 6.000e-60 Identity = 122/272 (44.85%), Postives = 165/272 (60.66%), Query Frame = 2
Query: 527 RAIRVTKNKHLSVALFLVFLLYSSISYTIFQTFACDLMDSGVAYLRADYSLECWTDIHTYFMTYARIMVLVYPVGIPAVFAWWLFTNRYRIENVDAPAWTGFQSGPERFYSVDAGKTLWGPYKRNRYYYE---------------------------------------VVECSRRVVLAGLAVFIYPGSSAQIAIEVLFAVLFYAVFEILSPFANPLEMWLYRSGAWIIYLSMYLALLLR------ESYSNNVFAWLLIAVHGCMALVVII 1207
+A+ V K++HLSVALF++F++Y+++SYTIF+TF CD +D G++YLRADYSL C T+ HT + YA +M+LVYPVGIP VF WWLF +R+ ++ Q G ER ++ LW PYK + YYYE VVEC RR+ L G AVFIYP SSAQ+AI +L A++F V E LSPFA P+EMWLYR+G ++++ SMYLALLLR + S VF+ +L+ H M LVV++
Sbjct: 7 QAMGVVKHRHLSVALFVMFVIYATVSYTIFETFVCDPLDDGISYLRADYSLTCETETHTAYRVYAGLMILVYPVGIPCVFGWWLFKHRHELK----------QEGRERRAALKPAADLWEPYKPSTYYYEAAQPPPYLDKLPRRLSSQCLPCPPASADMPPSATPTLEKVVECFRRIALTGFAVFIYPDSSAQVAIVLLLAIVFMVVSEFLSPFARPIEMWLYRTGHYVVFASMYLALLLRVDVSDENNQSQEVFSGVLVIAHAAMLLVVVL 268
BLAST of mRNA_H-elongata_contig10875.709.1 vs. uniprot
Match: A0A6H5JSF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF5_9PHAE) HSP 1 Score: 217 bits (552), Expect = 2.480e-58 Identity = 121/269 (44.98%), Postives = 172/269 (63.94%), Query Frame = 2
Query: 428 FTSVCLATIGPIAILGALAVIYRFAVIRNGHSIRAIRVTKNKHLSVALFLVFLLYSSISYTIFQTFACDLMDSGVAYLRADYSLECWTDIHTYFMTYARIMVLVYPVGIPAVFAWWLFTNRYRIENVDAPAWTGFQSGPERFYSVDAGKTLWGPYKRNRYYYEVVECSRRVVLAGLAVFIYPGSSAQIAIEVLFAVLFYAVFEILSPFANPLEMWLYRSGAWIIYLSMYLALLLRESYSN------NVFAWLLIAVHGCMALVVIIYAF 1216
F + +ATIGP+ +L LA+ + RN S A+R KNKHLS ALF++F +YSS+S+T+FQTF CD +D GV+YLRADYSL C T + F YA +MV VYP+GIPA FAW L +NR ++ D +R ++ LW YK +RYYYE++E RR+VL G+AVF+ PGSSAQ+A+ +L AV+F + E LSPF ++M LYR G ++ S+Y+ALLL+ + S + F +LI + CMA+ +++ +F
Sbjct: 766 FDRLLIATIGPVVVLALLALTFVVGRKRNIDSEAAVRAVKNKHLSAALFVMFFIYSSVSFTVFQTFVCDTLDDGVSYLRADYSLTCDTPRYGAFRGYAAVMVCVYPIGIPATFAWLLGSNRQDLQKADR----------DRLANLQPLGDLWEAYKPSRYYYEIIEYVRRIVLTGVAVFVLPGSSAQMAVVLLLAVVFLFISESLSPFTKKIDMALYRWGNGVVLASIYVALLLKVNVSEEGSETLSAFVVVLILANVCMAITLVVQSF 1024 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10875.709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10875.709.1 >prot_H-elongata_contig10875.709.1 ID=prot_H-elongata_contig10875.709.1|Name=mRNA_H-elongata_contig10875.709.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=200bp MDSGVAYLRADYSLECWTDIHTYFMTYARIMVLVYPVGIPAVFAWWLFTNback to top mRNA from alignment at H-elongata_contig10875:789..2695- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10875.709.1 ID=mRNA_H-elongata_contig10875.709.1|Name=mRNA_H-elongata_contig10875.709.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1907bp|location=Sequence derived from alignment at H-elongata_contig10875:789..2695- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10875:789..2695- >mRNA_H-elongata_contig10875.709.1 ID=mRNA_H-elongata_contig10875.709.1|Name=mRNA_H-elongata_contig10875.709.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1200bp|location=Sequence derived from alignment at H-elongata_contig10875:789..2695- (Himanthalia elongata Himel1 dioecious)back to top |