mRNA_H-elongata_contig108705.707.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig108705.707.1
Unique NamemRNA_H-elongata_contig108705.707.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig108705.707.1 vs. uniprot
Match: A0A6H5KAD0_9PHAE (Asparagine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KAD0_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 9.310e-35
Identity = 67/77 (87.01%), Postives = 73/77 (94.81%), Query Frame = 1 
Query:    1 RLSTGASVAVAGVVVESPGKGQRFEIKAHEVRVIGGCPSEYPLQKKRHSLEFLRGIAHLRPRTNTIAAVARVRSALA 231
            RL+TGASV+V GVVVESPGKGQRFE+KA EV V+G CP+EYPLQKKRH+LEFLRGIAHLRPRTNTIAAVARVRSALA
Sbjct:  181 RLTTGASVSVTGVVVESPGKGQRFEVKAQEVHVVGECPTEYPLQKKRHTLEFLRGIAHLRPRTNTIAAVARVRSALA 257
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BLAST of mRNA_H-elongata_contig108705.707.1 vs. uniprot
Match: A0A835Z2U2_9STRA (Asparagine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2U2_9STRA)

HSP 1 Score: 124 bits (312), Expect = 5.700e-32
Identity = 62/77 (80.52%), Postives = 70/77 (90.91%), Query Frame = 1 
Query:    1 RLSTGASVAVAGVVVESPGKGQRFEIKAHEVRVIGGCPSEYPLQKKRHSLEFLRGIAHLRPRTNTIAAVARVRSALA 231
            R+STGASVAV GV+ ESPG+GQRFE+KA E+ V+G CP +YPLQKKRHSLEFLRG+AHLRPRTNTI AVARVRSALA
Sbjct:   91 RVSTGASVAVRGVIQESPGQGQRFELKASEISVLGECPGDYPLQKKRHSLEFLRGMAHLRPRTNTIGAVARVRSALA 167
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BLAST of mRNA_H-elongata_contig108705.707.1 vs. uniprot
Match: A0A7S0YYM8_9CRYP (Asparagine--tRNA ligase (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YYM8_9CRYP)

HSP 1 Score: 112 bits (281), Expect = 1.550e-27
Identity = 57/78 (73.08%), Postives = 68/78 (87.18%), Query Frame = 1 
Query:    1 RLSTGASVAVAGVVVESPGKGQRFEIKAHEVRVIGGCPSE-YPLQKKRHSLEFLRGIAHLRPRTNTIAAVARVRSALA 231
            +L TG++VA+ G +VESPGK Q+FEIKA EV ++G C  E YPLQKKRH+LEFLRGIAHLRPRTNTIA+V+RVRSALA
Sbjct:  164 KLCTGSAVAIKGTIVESPGKNQKFEIKADEVELVGDCSGEEYPLQKKRHTLEFLRGIAHLRPRTNTIASVSRVRSALA 241
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BLAST of mRNA_H-elongata_contig108705.707.1 vs. uniprot
Match: A0A7S3M1Q1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M1Q1_9STRA)

HSP 1 Score: 106 bits (264), Expect = 5.130e-27
Identity = 50/77 (64.94%), Postives = 65/77 (84.42%), Query Frame = 1 
Query:    1 RLSTGASVAVAGVVVESPGKGQRFEIKAHEVRVIGGCPSEYPLQKKRHSLEFLRGIAHLRPRTNTIAAVARVRSALA 231
            +LSTGA+  + G ++ S GKGQ++E++A EV+++G CP+ YPLQKKRHS EFLR IAHLRPRTNTI+AV+RVRS LA
Sbjct:  124 KLSTGAAAEIKGTIIASQGKGQKYELQATEVKLVGECPTTYPLQKKRHSQEFLRSIAHLRPRTNTISAVSRVRSTLA 200
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BLAST of mRNA_H-elongata_contig108705.707.1 vs. uniprot
Match: W7TW83_9STRA (Asparagine--tRNA ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TW83_9STRA)

HSP 1 Score: 111 bits (277), Expect = 7.760e-27
Identity = 55/78 (70.51%), Postives = 66/78 (84.62%), Query Frame = 1 
Query:    1 RLSTGASVAVAGVVVESPGKGQRFEIKAHEVRVIGGC-PSEYPLQKKRHSLEFLRGIAHLRPRTNTIAAVARVRSALA 231
            ++ TGA++ V GV+  SPGKGQ++E+ A  V V+GGC P  YPLQKKRH+LEFLRGIAHLRPRTNT+AAVARVRSALA
Sbjct:  176 KIHTGAALGVVGVIKASPGKGQKYEVAAESVEVVGGCDPEAYPLQKKRHTLEFLRGIAHLRPRTNTLAAVARVRSALA 253
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BLAST of mRNA_H-elongata_contig108705.707.1 vs. uniprot
Match: A0A486XP49_9BACT (Asparagine--tRNA ligase n=4 Tax=Chlamydiae TaxID=204428 RepID=A0A486XP49_9BACT)

HSP 1 Score: 110 bits (274), Expect = 1.080e-26
Identity = 52/76 (68.42%), Postives = 64/76 (84.21%), Query Frame = 1 
Query:    1 RLSTGASVAVAGVVVESPGKGQRFEIKAHEVRVIGGCPSEYPLQKKRHSLEFLRGIAHLRPRTNTIAAVARVRSAL 228
            +LSTGAS++V G +VES GKGQR+E+KAH + + G CP EYPLQKKRHS EFLR +AHLRPRTNT  A+AR+R+AL
Sbjct:   64 KLSTGASISVTGELVESLGKGQRWELKAHAIHLFGTCPEEYPLQKKRHSFEFLRSLAHLRPRTNTQGAIARIRNAL 139
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BLAST of mRNA_H-elongata_contig108705.707.1 vs. uniprot
Match: A0A7S0PXM8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PXM8_9EUKA)

HSP 1 Score: 108 bits (269), Expect = 1.120e-26
Identity = 57/78 (73.08%), Postives = 65/78 (83.33%), Query Frame = 1 
Query:    1 RLSTGASVAVAGVVVESPGKGQRFEIKAHEVRVIGGCPSE-YPLQKKRHSLEFLRGIAHLRPRTNTIAAVARVRSALA 231
            RLSTGA+VAV G VVESP  GQ  E+KA E+ ++G CP++ YPLQKKRHSLEFLR IAHLRPRTN + AVARVRSALA
Sbjct:  141 RLSTGAAVAVRGEVVESPAAGQAVELKASELELVGACPADTYPLQKKRHSLEFLRSIAHLRPRTNMLGAVARVRSALA 218
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BLAST of mRNA_H-elongata_contig108705.707.1 vs. uniprot
Match: A0A7S2XZ42_9STRA (Asparagine--tRNA ligase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ42_9STRA)

HSP 1 Score: 108 bits (271), Expect = 5.150e-26
Identity = 57/78 (73.08%), Postives = 68/78 (87.18%), Query Frame = 1 
Query:    1 RLSTGASVAVAGVVVESPGKGQRFEIKAHEVRVIGGCPSE-YPLQKKRHSLEFLRGIAHLRPRTNTIAAVARVRSALA 231
            +L+TG +V +AGVV  SPGKGQ+FE++A EV+++G CP+E YPLQKKR SLEFLR  AHLRPRTNTIAAVARVRSALA
Sbjct:  176 QLTTGCAVEIAGVVAASPGKGQKFELQASEVKLLGACPAEGYPLQKKRASLEFLRTNAHLRPRTNTIAAVARVRSALA 253
[Close]
BLAST of mRNA_H-elongata_contig108705.707.1 vs. uniprot
Match: A0A7X5Q7R8_9BACT (Asparagine--tRNA ligase n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A7X5Q7R8_9BACT)

HSP 1 Score: 106 bits (265), Expect = 2.120e-25
Identity = 55/78 (70.51%), Postives = 65/78 (83.33%), Query Frame = 1 
Query:    1 RLSTGASVAVAGVVVESPGKGQRFEIKAHEVRVIGGC-PSEYPLQKKRHSLEFLRGIAHLRPRTNTIAAVARVRSALA 231
            +LSTG SV+V G +VESPG+GQ  E++A E+ VIG C P +YPLQKKRHS EFLR I+HLRPRTNT+ AVARVRSALA
Sbjct:   69 QLSTGVSVSVTGKIVESPGEGQAIEMQAKEITVIGACDPEKYPLQKKRHSFEFLRTISHLRPRTNTLGAVARVRSALA 146
[Close]
BLAST of mRNA_H-elongata_contig108705.707.1 vs. uniprot
Match: L1IEP1_GUITC (Asparagine--tRNA ligase n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IEP1_GUITC)

HSP 1 Score: 106 bits (265), Expect = 3.680e-25
Identity = 52/78 (66.67%), Postives = 66/78 (84.62%), Query Frame = 1 
Query:    1 RLSTGASVAVAGVVVESPGKGQRFEIKAHEVRVIGGCPS-EYPLQKKRHSLEFLRGIAHLRPRTNTIAAVARVRSALA 231
            +L TGASVAV G +VESPG+GQ++E+ A E+ ++G C   +YPLQKKRH+LEFLR IAHLRPRTNT+ ++ARVRSALA
Sbjct:  261 KLCTGASVAVKGTIVESPGQGQQYEVAASEIELVGDCSGKDYPLQKKRHTLEFLRSIAHLRPRTNTLGSIARVRSALA 338
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108705.707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAD0_9PHAE9.310e-3587.01Asparagine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z2U2_9STRA5.700e-3280.52Asparagine--tRNA ligase n=1 Tax=Tribonema minus Ta... [more]
A0A7S0YYM8_9CRYP1.550e-2773.08Asparagine--tRNA ligase (Fragment) n=1 Tax=Hemisel... [more]
A0A7S3M1Q1_9STRA5.130e-2764.94Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
W7TW83_9STRA7.760e-2770.51Asparagine--tRNA ligase n=2 Tax=Monodopsidaceae Ta... [more]
A0A486XP49_9BACT1.080e-2668.42Asparagine--tRNA ligase n=4 Tax=Chlamydiae TaxID=2... [more]
A0A7S0PXM8_9EUKA1.120e-2673.08Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A7S2XZ42_9STRA5.150e-2673.08Asparagine--tRNA ligase n=1 Tax=Fibrocapsa japonic... [more]
A0A7X5Q7R8_9BACT2.120e-2570.51Asparagine--tRNA ligase n=1 Tax=Chlamydiae bacteri... [more]
L1IEP1_GUITC3.680e-2566.67Asparagine--tRNA ligase n=2 Tax=Guillardia theta T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig108705contigH-elongata_contig108705:84..895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue1e-21
Seed eggNOG ortholog55529.EKX34562
KEGG rclassRC00055,RC00523
KEGG koko:K01893
KEGG ReactionR03648
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0003674,GO:0003824,GO:0004812,GO:0004816,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006421,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.asparagine-tRNA ligase activity
EggNOG OGsCOG0017@1,KOG0554@2759
Ec32 ortholog descriptionAsparaginyl-tRNA Synthetase
Ec32 orthologEc-16_001810.1
EC6.1.1.22
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929614.8094234-CDS-H-elongata_contig108705:83..1731622929614.8094234-CDS-H-elongata_contig108705:83..173Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108705 84..173 +
1691679091.9619784-CDS-H-elongata_contig108705:83..1731691679091.9619784-CDS-H-elongata_contig108705:83..173Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108705 84..173 +
1622929614.8230217-CDS-H-elongata_contig108705:754..8951622929614.8230217-CDS-H-elongata_contig108705:754..895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108705 755..895 +
1691679091.9720705-CDS-H-elongata_contig108705:754..8951691679091.9720705-CDS-H-elongata_contig108705:754..895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108705 755..895 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig108705.707.1prot_H-elongata_contig108705.707.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig108705 84..895 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig108705.707.1

>prot_H-elongata_contig108705.707.1 ID=prot_H-elongata_contig108705.707.1|Name=mRNA_H-elongata_contig108705.707.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
RLSTGASVAVAGVVVESPGKGQRFEIKAHEVRVIGGCPSEYPLQKKRHSL
EFLRGIAHLRPRTNTIAAVARVRSALA
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mRNA from alignment at H-elongata_contig108705:84..895+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig108705.707.1 ID=mRNA_H-elongata_contig108705.707.1|Name=mRNA_H-elongata_contig108705.707.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=812bp|location=Sequence derived from alignment at H-elongata_contig108705:84..895+ (Himanthalia elongata Himel1 dioecious)
CGGCTCTCAACGGGGGCCTCGGTGGCCGTCGCGGGGGTCGTCGTTGAGTC
TCCAGGCAAGGGTCAGCGCTTCGAGATCAAGGCTCATGAGGTACTGTAAT
CGTTTTATTTCGCCCCTTTCAGTGTCGTTCAGTCTGCAGGAACGGAACGA
GCTCGAGCTACTGCTGCTTTGTTGATAATATTTATAGCTTTCGTTGCGCC
CTCTCGTGCGCACATGCCTCCGTAGAACCCCCCTTCCATTCCTCGCGCGC
CCTAAAATGATTTCTTCGGAATATATGACAAATAAAGCGCGCGTAGCGTC
ACTGCTTGAGTGCAGCATCTGCGTTTAGCGCGCCATTCCTGCGCGGGGAA
GAAAGGGAGCTCCTAAAATATTTCAACATCTGCCGTGCGTGGATATTGTT
TTGCCTTGCTTCGGGTCTGGAAGGCCCGGGTCTGAAGTGCCATTGGGAGA
GTTTGAGATAGGGGGGGGGAGGGGGGCTGTTGCCGCTTTCACCTCTGTAC
ACTAATCCCTCCTTCGGCTTAGATGAGTCGGCGTTCATTGATATCGGTGG
TACAACCCTCTGATCGCGCAACCTCGTTCACAATATCTTGACAACATACG
CCTGTCTGCTTTACCTAAACCAAAAAAACAAAAACGAAACTTGCACGAAA
ACCGAATAAAAATCATAACAGGTGCGCGTTATCGGGGGGTGTCCGAGCGA
GTACCCTCTACAGAAGAAGCGGCATTCCCTCGAGTTCTTGCGCGGCATCG
CACACCTCCGCCCTCGCACTAACACCATCGCGGCCGTCGCCAGGGTCCGC
TCCGCCCTGGCT
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Coding sequence (CDS) from alignment at H-elongata_contig108705:84..895+

>mRNA_H-elongata_contig108705.707.1 ID=mRNA_H-elongata_contig108705.707.1|Name=mRNA_H-elongata_contig108705.707.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig108705:84..895+ (Himanthalia elongata Himel1 dioecious)
CGGCTCTCAACGGGGGCCTCGGTGGCCGTCGCGGGGGTCGTCGTTGAGTC
TCCAGGCAAGGGTCAGCGCTTCGAGATCAAGGCTCATGAGCGGCTCTCAA
CGGGGGCCTCGGTGGCCGTCGCGGGGGTCGTCGTTGAGTCTCCAGGCAAG
GGTCAGCGCTTCGAGATCAAGGCTCATGAGGTGCGCGTTATCGGGGGGTG
TCCGAGCGAGTACCCTCTACAGAAGAAGCGGCATTCCCTCGAGTTCTTGC
GCGGCATCGCACACCTCCGCCCTCGCACTAACACCATCGCGGCCGTCGCC
AGGGTCCGCTCCGCCCTGGCTGTGCGCGTTATCGGGGGGTGTCCGAGCGA
GTACCCTCTACAGAAGAAGCGGCATTCCCTCGAGTTCTTGCGCGGCATCG
CACACCTCCGCCCTCGCACTAACACCATCGCGGCCGTCGCCAGGGTCCGC
TCCGCCCTGGCT
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