mRNA_H-elongata_contig108693.706.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig108693.706.1
Unique NamemRNA_H-elongata_contig108693.706.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108693.706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig108693contigH-elongata_contig108693:450..1084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size635
Cds size510
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929614.7610648-UTR-H-elongata_contig108693:449..5741622929614.7610648-UTR-H-elongata_contig108693:449..574Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig108693 450..574 +
1691679091.9452891-UTR-H-elongata_contig108693:449..5741691679091.9452891-UTR-H-elongata_contig108693:449..574Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig108693 450..574 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929614.7719116-CDS-H-elongata_contig108693:574..10841622929614.7719116-CDS-H-elongata_contig108693:574..1084Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108693 575..1084 +
1691679091.9531982-CDS-H-elongata_contig108693:574..10841691679091.9531982-CDS-H-elongata_contig108693:574..1084Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108693 575..1084 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig108693.706.1prot_H-elongata_contig108693.706.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig108693 575..1084 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig108693.706.1

>prot_H-elongata_contig108693.706.1 ID=prot_H-elongata_contig108693.706.1|Name=mRNA_H-elongata_contig108693.706.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp
MLLRRRLLLFLLPFDQFSLSSRFIPSFLLRSNPASKGLASPIQRRRAEVT
LPSITTPDPSTVGTVNHRGVDASAAPASNFPFGRQTPTLLLRSYRWLVPR
ERGFDNDSGVAGLVWIGGKFRKGGDVVTAVAITTATTGGRVCFLAPPHHG
QPFRRRNSRRLPELRGRRVA
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mRNA from alignment at H-elongata_contig108693:450..1084+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig108693.706.1 ID=mRNA_H-elongata_contig108693.706.1|Name=mRNA_H-elongata_contig108693.706.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=635bp|location=Sequence derived from alignment at H-elongata_contig108693:450..1084+ (Himanthalia elongata Himel1 dioecious)
TCCGCCTCAGGTGCCCACCGCCGCTCGCCTATCTCCCCTCCCCCGACGGC
ACCTGAACCTTGCTTGCCCAGCCATGTTCGCTGACCCGGGCGGTAGGATT
CTTGCCCTTGCCCTTGCCCCTGCTTATGCTTCTGCGGCGGCGGCTGTTGT
TGTTTCTTTTGCCATTTGACCAATTCAGCCTCTCGAGCCGTTTCATCCCC
TCTTTCCTTCTCCGATCGAACCCGGCGAGCAAAGGTCTCGCCAGTCCAAT
TCAACGACGCCGCGCCGAGGTCACCCTCCCCTCTATCACCACCCCCGACC
CCTCCACGGTCGGAACCGTGAACCATCGCGGAGTCGACGCCTCCGCCGCC
CCCGCTAGCAACTTCCCGTTCGGGCGTCAAACTCCAACTCTGCTCCTCCG
AAGCTACCGCTGGCTCGTGCCGCGAGAGAGGGGCTTCGACAACGACAGCG
GCGTCGCCGGCTTGGTCTGGATCGGCGGGAAGTTCAGGAAAGGAGGGGAC
GTTGTCACCGCCGTCGCCATCACCACCGCCACCACTGGAGGTCGCGTCTG
TTTCCTCGCTCCCCCGCATCACGGCCAGCCATTCCGACGCCGGAACTCCC
GCCGCCTCCCGGAGCTTCGGGGCCGTCGAGTAGCT
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Coding sequence (CDS) from alignment at H-elongata_contig108693:450..1084+

>mRNA_H-elongata_contig108693.706.1 ID=mRNA_H-elongata_contig108693.706.1|Name=mRNA_H-elongata_contig108693.706.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig108693:450..1084+ (Himanthalia elongata Himel1 dioecious)
ATGCTTCTGCGGCGGCGGCTGTTGTTGTTTCTTTTGCCATTTGACCAATT
CAGCCTCTCGAGCCGTTTCATCCCCTCTTTCCTTCTCCGATCGAACCCGG
CGAGCAAAGGTCTCGCCAGTCCAATTCAACGACGCCGCGCCGAGGTCACC
CTCCCCTCTATCACCACCCCCGACCCCTCCACGGTCGGAACCGTGAACCA
TCGCGGAGTCGACGCCTCCGCCGCCCCCGCTAGCAACTTCCCGTTCGGGC
GTCAAACTCCAACTCTGCTCCTCCGAAGCTACCGCTGGCTCGTGCCGCGA
GAGAGGGGCTTCGACAACGACAGCGGCGTCGCCGGCTTGGTCTGGATCGG
CGGGAAGTTCAGGAAAGGAGGGGACGTTGTCACCGCCGTCGCCATCACCA
CCGCCACCACTGGAGGTCGCGTCTGTTTCCTCGCTCCCCCGCATCACGGC
CAGCCATTCCGACGCCGGAACTCCCGCCGCCTCCCGGAGCTTCGGGGCCG
TCGAGTAGCTATGCTTCTGCGGCGGCGGCTGTTGTTGTTTCTTTTGCCAT
TTGACCAATTCAGCCTCTCGAGCCGTTTCATCCCCTCTTTCCTTCTCCGA
TCGAACCCGGCGAGCAAAGGTCTCGCCAGTCCAATTCAACGACGCCGCGC
CGAGGTCACCCTCCCCTCTATCACCACCCCCGACCCCTCCACGGTCGGAA
CCGTGAACCATCGCGGAGTCGACGCCTCCGCCGCCCCCGCTAGCAACTTC
CCGTTCGGGCGTCAAACTCCAACTCTGCTCCTCCGAAGCTACCGCTGGCT
CGTGCCGCGAGAGAGGGGCTTCGACAACGACAGCGGCGTCGCCGGCTTGG
TCTGGATCGGCGGGAAGTTCAGGAAAGGAGGGGACGTTGTCACCGCCGTC
GCCATCACCACCGCCACCACTGGAGGTCGCGTCTGTTTCCTCGCTCCCCC
GCATCACGGCCAGCCATTCCGACGCCGGAACTCCCGCCGCCTCCCGGAGC
TTCGGGGCCGTCGAGTAGCT
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