mRNA_H-elongata_contig10867.705.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig10867.705.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE) HSP 1 Score: 187 bits (475), Expect = 1.870e-55 Identity = 101/203 (49.75%), Postives = 132/203 (65.02%), Query Frame = 1
Query: 28 LFYSMDEVKGHNCAEIRALSKPVLKIEAKNFFKAARRVTADAAQGLQRDAFLTEEANVMLTSNLWAEGGLVNGMQEKVGDIVWTPGEETPALSNFVVIRFNGYTDPAWSGNPRYGGCVPIAAVETSWSATGDGGKQESREQLLFALFWAITMHKSQGQTVDKAVVDLRKSEVTAGLTFVRLSRAKRLVDLLVDHVPFDRLSKL 636
LFYS EV +N ++R L PV ++ A + ARR TAD A+GL+RD +L + A VML+ NL+ + GLVNG++ +V ++V P L +VV++F GY+ WS RY CVPI+ V+T+W DGG Q R QL L WAITMHKSQGQT+ KAV+DL E GLTFV LSRAKRLVDL+V+ + FDR+ L
Sbjct: 52 LFYSKKEVNKYNGKKLRELDNPVARVSAVHTGANARRATADTAEGLERDLYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQ---DGGTQV-RTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNL 250
BLAST of mRNA_H-elongata_contig10867.705.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE) HSP 1 Score: 198 bits (503), Expect = 9.150e-55 Identity = 106/212 (50.00%), Postives = 139/212 (65.57%), Query Frame = 1
Query: 1 RRSFNDATRLFYSMDEVKGHNCAEIRALSKPVLKIEAKNFFKAARRVTADAAQGLQRDAFLTEEANVMLTSNLWAEGGLVNGMQEKVGDIVWTPGEETPALSNFVVIRFNGYTDPAWSGNPRYGGCVPIAAVETSWSATGDGGKQESREQLLFALFWAITMHKSQGQTVDKAVVDLRKSEVTAGLTFVRLSRAKRLVDLLVDHVPFDRLSKL 636
+ +F DATRLFYS EV +N ++R L PV ++ A + ARR TAD A+GL+RD +L + A VML+ NL+ + GLVNG++ +V ++V P L +VV++F GY+ WS RY CVPI+ V+T+W DGG Q R QL L WAITMHKSQGQT+ KAV+DL E GLTFV LSRAKRLVDL+V+ + FDR+ L
Sbjct: 1348 KAAFEDATRLFYSKKEVNKYNGKKLRELDNPVARVSAVHTGANARRATADTAEGLERDLYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQ---DGGTQV-RTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNL 1555
BLAST of mRNA_H-elongata_contig10867.705.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE) HSP 1 Score: 160 bits (404), Expect = 3.940e-43 Identity = 84/163 (51.53%), Postives = 109/163 (66.87%), Query Frame = 1
Query: 148 DAAQGLQRDAFLTEEANVMLTSNLWAEGGLVNGMQEKVGDIVWTPGEETPALSNFVVIRFNGYTDPAWSGNPRYGGCVPIAAVETSWSATGDGGKQESREQLLFALFWAITMHKSQGQTVDKAVVDLRKSEVTAGLTFVRLSRAKRLVDLLVDHVPFDRLSKL 636
D A+GL+RD +L + A VML+ NL+ + GLVNG++ +V ++V P L +VV++F GY+ WS RY CVPI+ V+T+W DGG Q R QL L WAITMHKSQGQT+ KAV+DL E GLTFV LSRAKRLVDL+V+ + FDR+ L
Sbjct: 266 DTAEGLERDLYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQ---DGGTQV-RTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNL 424
BLAST of mRNA_H-elongata_contig10867.705.1 vs. uniprot
Match: UPI00106B9E63 (uncharacterized protein LOC114530406 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106B9E63) HSP 1 Score: 150 bits (380), Expect = 3.020e-41 Identity = 77/214 (35.98%), Postives = 125/214 (58.41%), Query Frame = 1
Query: 4 RSFNDATRLFYSMDEVKGHNCAEIRALSKPVLKIEAKNFFKAARRVTADAAQGLQRDAFLTEEANVMLTSNLWAEGGLVNGMQEKVGDIVWTPGEETPALSNFVVIRFNGYTDPAWSGNPRYGGCVPIAAVETSWSATGDGGKQESREQLLFALFWAITMHKSQGQTVDKAVVDLRKSEVTAGLTFVRLSRAKRLVDLLVDHVPFDRLSKLREN 645
+ F + RLFYS +EV N + L +P+ +I A++ A+ + + GLQ + ++A VMLT NLW GL NG+ + DI++ +E P L VV++F+ Y P++S P CVPI+ + S + R+QL L WA+T+HKSQG T+DK VD+ K E + G+++V LSR ++L ++++ +PFDRLS ++++
Sbjct: 56 QEFQHSIRLFYSNEEVAKFNYEHLLDLKQPIAQINARHSTNKAKVINSQDMYGLQPTLLIAKKARVMLTMNLWPSAGLCNGVTGYIEDIIYAQSQEPPLLPTAVVVKFDNYIGPSFSTTPC---CVPISPITVSVNLNN---VIHERQQLPLTLAWALTIHKSQGMTIDKLWVDIGKKEHSLGMSYVALSRVRKLSSMVIEPMPFDRLSSIKKS 263
BLAST of mRNA_H-elongata_contig10867.705.1 vs. uniprot
Match: UPI00106C62E8 (ATP-dependent DNA helicase PIF6-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C62E8) HSP 1 Score: 145 bits (366), Expect = 2.600e-39 Identity = 83/212 (39.15%), Postives = 125/212 (58.96%), Query Frame = 1
Query: 10 FNDATRLFYSMDEVKGHNCAEIRALSKPVLKIEAKNFFKAARRVTADAAQGLQRDAFLTEEANVMLTSNLWAEGGLVNGMQEKVGDIVWTPGEETPALSNFVVIRFNGYTDPAWSGNPRYGGCVPIAAVETSWSATGDGGKQESREQLLFALFWAITMHKSQGQTVDKAVVDLRKSEVTAGLTFVRLSRAKRLVDLLVDHVPFDRLSKLREN 645
F DATRLFYS ++V +N ++ L P+ I A++ A++++AD GL+ AFL + A VMLT NLW+ GL NG V DIV+ + P L V+I F Y PA+ N CVPI + S + + G E +QL L WA+T+HKSQG T+ KA +D+ K+E TAG+++V +SR K L +++ + ++RL+ L+ +
Sbjct: 42 FADATRLFYSNEQVANYNSEQLTKLEHPIAHINARHSSAFAKKLSADDMSGLEPVAFLAKGARVMLTMNLWSSVGLCNGATGIVVDIVYQNNHQPPDLPIVVIIEFENYRGPAF--NVDKPSCVPICPITVS--SQSETGFHEL-QQLPLRLAWALTIHKSQGLTLPKAWIDIGKTERTAGVSYVAISRVKLLSSCVIEPMTYERLTSLKSS 248
BLAST of mRNA_H-elongata_contig10867.705.1 vs. uniprot
Match: A0A7D9EBM6_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9EBM6_PARCT) HSP 1 Score: 145 bits (366), Expect = 3.890e-39 Identity = 79/212 (37.26%), Postives = 124/212 (58.49%), Query Frame = 1
Query: 10 FNDATRLFYSMDEVKGHNCAEIRALSKPVLKIEAKNFFKAARRVTADAAQGLQRDAFLTEEANVMLTSNLWAEGGLVNGMQEKVGDIVWTPGEETPALSNFVVIRFNGYTDPAWSGNPRYGGCVPIAAVETSWSATGDGGKQESREQLLFALFWAITMHKSQGQTVDKAVVDLRKSEVTAGLTFVRLSRAKRLVDLLVDHVPFDRLSKLREN 645
F DATRLFYS ++V +N ++ L P+ I A++ A++++ D GL+ FL + A VMLT NLW+ GL NG V DI++ + P L +++ F+ Y P + N CVPI + S S T G + R+QL L WA+++HKSQG T+ K +D+ KSE TAG+++V +SRAK L +++ + ++RL+ L+ +
Sbjct: 54 FEDATRLFYSNEQVANYNHEQLIKLEHPIAHINARHSSALAKKISPDDMSGLEPVVFLAKGARVMLTMNLWSSVGLCNGATGTVVDIIYQNNHQPPDLPVAIIVEFDNYRGPVFDDNKP--SCVPICPITVS-SQTEIGFHE--RQQLPLRLAWALSIHKSQGLTLPKVWIDIGKSERTAGVSYVAISRAKTLASCVIEPMTYERLTSLKSS 260
BLAST of mRNA_H-elongata_contig10867.705.1 vs. uniprot
Match: A0A7D9HJE5_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HJE5_PARCT) HSP 1 Score: 145 bits (365), Expect = 4.060e-39 Identity = 78/212 (36.79%), Postives = 125/212 (58.96%), Query Frame = 1
Query: 10 FNDATRLFYSMDEVKGHNCAEIRALSKPVLKIEAKNFFKAARRVTADAAQGLQRDAFLTEEANVMLTSNLWAEGGLVNGMQEKVGDIVWTPGEETPALSNFVVIRFNGYTDPAWSGNPRYGGCVPIAAVETSWSATGDGGKQESREQLLFALFWAITMHKSQGQTVDKAVVDLRKSEVTAGLTFVRLSRAKRLVDLLVDHVPFDRLSKLREN 645
F D+TRLFYS ++V +N ++ L P+ I A++ A+++++D GL+ FL + A VMLT NLW+ GL NG V DI++ + P L V++ F Y P ++ N C+PI + + S T G + R+QL L WA+T+HKSQG T+ KA +D+ KSE TAG+++V +SR K L +++ + ++RL+ L+ +
Sbjct: 42 FEDSTRLFYSNEQVGNYNHEQLTKLEHPIAHINARHSSALAKKISSDDMSGLEPVVFLAKGARVMLTMNLWSSVGLCNGATGTVVDIIYQNNHQPPDLPIAVIVEFENYRGPVFNENQPL--CIPIIPITVA-SQTEIGFHE--RQQLPLRLAWALTIHKSQGLTLPKAWIDIGKSERTAGVSYVAISRVKSLASCVIEPMTYERLTSLKSS 248
BLAST of mRNA_H-elongata_contig10867.705.1 vs. uniprot
Match: UPI00106C2519 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C2519) HSP 1 Score: 147 bits (370), Expect = 4.480e-39 Identity = 82/212 (38.68%), Postives = 123/212 (58.02%), Query Frame = 1
Query: 10 FNDATRLFYSMDEVKGHNCAEIRALSKPVLKIEAKNFFKAARRVTADAAQGLQRDAFLTEEANVMLTSNLWAEGGLVNGMQEKVGDIVWTPGEETPALSNFVVIRFNGYTDPAWSGNPRYGGCVPIAAVETSWSATGDGGKQESREQLLFALFWAITMHKSQGQTVDKAVVDLRKSEVTAGLTFVRLSRAKRLVDLLVDHVPFDRLSKLREN 645
F DATRLFYS ++V +N ++ L P I A + A++++ D GL+ FL + A VMLT NLW+ GL NG V DIV+ + P L V++ F Y PA++ N CVPI + S + + G E R+QL L WA+T+HKSQG T+ KA +D+ KSE TAG+++V +SR + L +++ + F+RL+ L+ +
Sbjct: 123 FQDATRLFYSNEQVANYNNEQLTKLEHPTAHINAHHSSALAKKMSPDDMSGLEPVVFLAKRARVMLTMNLWSSVGLCNGATGTVVDIVYQNNHQPPDLPIAVIVDFENYRGPAFNVNKP--SCVPICPITVS--SQSESGFHE-RQQLPLRLAWALTIHKSQGLTLPKAWIDIGKSEKTAGVSYVAISRVRSLSSCVIEPMTFERLTSLKSS 329
BLAST of mRNA_H-elongata_contig10867.705.1 vs. uniprot
Match: A0A6S7LPR6_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7LPR6_PARCT) HSP 1 Score: 146 bits (368), Expect = 5.690e-39 Identity = 80/212 (37.74%), Postives = 126/212 (59.43%), Query Frame = 1
Query: 10 FNDATRLFYSMDEVKGHNCAEIRALSKPVLKIEAKNFFKAARRVTADAAQGLQRDAFLTEEANVMLTSNLWAEGGLVNGMQEKVGDIVWTPGEETPALSNFVVIRFNGYTDPAWSGNPRYGGCVPIAAVETSWSATGDGGKQESREQLLFALFWAITMHKSQGQTVDKAVVDLRKSEVTAGLTFVRLSRAKRLVDLLVDHVPFDRLSKLREN 645
F DATRLFYS ++V +N ++ L +PV I A++ A+++ ++ GL+ FL + A VMLT NLW+ GL NG V D ++ P L VV++F+ Y P++ CVPI + S S +G+G + R+QL L WA+T+HKSQG T+ KA +D+ KSE TAG+++V +SR K L +++ + ++RL+ L+ +
Sbjct: 95 FEDATRLFYSNEQVANYNHDQLSKLEQPVAHINARHSSAIAKKIASEDMSGLEPVVFLAKGAKVMLTMNLWSNVGLCNGATGTVIDFIFESNHRPPDLPVGVVVQFDNYRGPSFDDTQP--SCVPICPITVS-SQSGNGFHE--RQQLPLRLAWALTIHKSQGLTLSKAWIDIGKSERTAGVSYVAISRVKTLSSCVIEPMTYERLTSLKSS 301
BLAST of mRNA_H-elongata_contig10867.705.1 vs. uniprot
Match: A0A6S7LS63_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7LS63_PARCT) HSP 1 Score: 142 bits (359), Expect = 1.630e-38 Identity = 78/212 (36.79%), Postives = 125/212 (58.96%), Query Frame = 1
Query: 10 FNDATRLFYSMDEVKGHNCAEIRALSKPVLKIEAKNFFKAARRVTADAAQGLQRDAFLTEEANVMLTSNLWAEGGLVNGMQEKVGDIVWTPGEETPALSNFVVIRFNGYTDPAWSGNPRYGGCVPIAAVETSWSATGDGGKQESREQLLFALFWAITMHKSQGQTVDKAVVDLRKSEVTAGLTFVRLSRAKRLVDLLVDHVPFDRLSKLREN 645
F D+TRLFYS ++V +N ++ L P+ I A++ A+++++D GL+ FL + A VMLT NLW+ GL NG V DI++ + P L V++ F Y P ++ + C+PI + T S T G + R+QL L WA+T+HKSQG T+ KA +D+ KSE TAG+++V +SR K L +++ + ++RL+ L+ +
Sbjct: 16 FEDSTRLFYSNEQVGNYNHEQLTKLEHPIAHINARHSSALAKKISSDDMSGLEPVVFLAKGARVMLTMNLWSSVGLCNGATGTVVDIIYQNNHQPPDLPIAVIVEFENYRGPVFNESRPL--CIPIYPI-TVTSQTEIGFHE--RQQLPLRLAWALTIHKSQGLTLPKAWIDIGKSERTAGVSYVAISRVKSLASCVIEPMTYERLTSLKSS 222 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10867.705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10867.705.1 >prot_H-elongata_contig10867.705.1 ID=prot_H-elongata_contig10867.705.1|Name=mRNA_H-elongata_contig10867.705.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=220bp RRSFNDATRLFYSMDEVKGHNCAEIRALSKPVLKIEAKNFFKAARRVTADback to top mRNA from alignment at H-elongata_contig10867:509..1168- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10867.705.1 ID=mRNA_H-elongata_contig10867.705.1|Name=mRNA_H-elongata_contig10867.705.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=660bp|location=Sequence derived from alignment at H-elongata_contig10867:509..1168- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10867:509..1168- >mRNA_H-elongata_contig10867.705.1 ID=mRNA_H-elongata_contig10867.705.1|Name=mRNA_H-elongata_contig10867.705.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1320bp|location=Sequence derived from alignment at H-elongata_contig10867:509..1168- (Himanthalia elongata Himel1 dioecious)back to top |