mRNA_H-elongata_contig108630.701.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig108630.701.1
Unique NamemRNA_H-elongata_contig108630.701.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig108630.701.1 vs. uniprot
Match: D7FSV0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSV0_ECTSI)

HSP 1 Score: 229 bits (583), Expect = 1.160e-68
Identity = 109/114 (95.61%), Postives = 110/114 (96.49%), Query Frame = 1 
Query:    1 PPSFQTRALVRYRDLPDRSRSFVVFVSHAWMRPHTTPSFAHPDTSSRGGEKYRLIAEAGDRIRAHLPPDVRVLLWIDYSCVDQDSTRRSKATMRGMREYMRRCDAILTVYPGEA 342
            P S   RALVRYRDLPDRSRSFVVFVSHAWMRPHTTPSFAHPDTSSRGGEKYRLIAEAGDRIRAHLPPDVRVLLWIDYSCVDQDSTRRSKATMRGMREYMRRCDAILTVYPG+A
Sbjct:  510 PRSSDRRALVRYRDLPDRSRSFVVFVSHAWMRPHTTPSFAHPDTSSRGGEKYRLIAEAGDRIRAHLPPDVRVLLWIDYSCVDQDSTRRSKATMRGMREYMRRCDAILTVYPGDA 623
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BLAST of mRNA_H-elongata_contig108630.701.1 vs. uniprot
Match: A0A7S2IEM7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2IEM7_9EUKA)

HSP 1 Score: 68.6 bits (166), Expect = 2.260e-11
Identity = 38/100 (38.00%), Postives = 58/100 (58.00%), Query Frame = 1 
Query:   34 YRDLPDRSRSFVVFVSHAWMRPHTTPSFAHPDTSSRGGEKYRLIAEAGDRIRAHLPP---DVRVLLWIDYSCVDQDSTRRSKATMRGMREYMRRCDAILT 324
            Y D  DRS +  +FVSH W+RP   P+  HPD      +K++LI EA +R+R    P    +++ LW+D++C+DQDS+   +   R M   +  CD +LT
Sbjct:   68 YEDF-DRSTTAFIFVSHRWLRPRQGPA-GHPDDFDH--QKHKLIVEACERLRGPRAPIAEHMQIALWVDFACLDQDSSPAQELEER-MTTLIGVCDLLLT 162
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BLAST of mRNA_H-elongata_contig108630.701.1 vs. uniprot
Match: A0A7S1DLE0_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DLE0_HEMAN)

HSP 1 Score: 58.2 bits (139), Expect = 1.650e-7
Identity = 31/92 (33.70%), Postives = 51/92 (55.43%), Query Frame = 1 
Query:   58 RSFVVFVSHAWMRPHTTPSFAHPDTSSRGGEKYRLIAEAGDRI--RAHLPPDV-RVLLWIDYSCVDQDSTRRSKATMRGMREYMRRCDAILT 324
            R F +FVSH W++P       HPD  + G  KY+L+ +  + +  R  +P D  +++LWIDY+C++QD+   +      M   +  CD +LT
Sbjct:   89 RLFRIFVSHRWLQPEKP----HPD--AEGNPKYKLLLKCIEDMQERGWIPSDDDKIVLWIDYACINQDAKDPAAELNDNMLRIVGMCDMVLT 174
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BLAST of mRNA_H-elongata_contig108630.701.1 vs. uniprot
Match: A0A7S0U0U2_HEMAN (Hypothetical protein (Fragment) n=3 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U0U2_HEMAN)

HSP 1 Score: 57.4 bits (137), Expect = 3.240e-7
Identity = 32/92 (34.78%), Postives = 51/92 (55.43%), Query Frame = 1 
Query:   58 RSFVVFVSHAWMRPHTTPSFAHPDTSSRGGEKYRLIAEAGDRI--RAHLPPDV-RVLLWIDYSCVDQDSTRRSKATMRGMREYMRRCDAILT 324
            R F +FVSH W++P       HPD +  G  KY+LI +  + +  R  +P D  +++LWIDY+C++QD+   +      M   +  CD +LT
Sbjct:  117 RLFRIFVSHRWLQPEKP----HPDAN--GHPKYQLILKCIEDMQKRGWVPSDDDKIVLWIDYACINQDAKDPAAELNDNMLRIVGMCDMVLT 202
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BLAST of mRNA_H-elongata_contig108630.701.1 vs. uniprot
Match: A0A7S3V685_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V685_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 8.050e-7
Identity = 31/102 (30.39%), Postives = 54/102 (52.94%), Query Frame = 1 
Query:   25 LVRYRDLP--DRSRSFVVFVSHAWMRPHTTPSFAHPDTSSRGGEKYRLIAEAGDRIRAHLPPDVRVLLWIDYSCVDQDSTRRSKATMRGMREYMRRCDAILT 324
            LVRYRDL   DR+++ +VF+SH W+   +      PD+      K+++     D ++      VR+L+W+DYSC++Q       + +  +  Y+ R   IL+
Sbjct:   78 LVRYRDLEEVDRAQTMIVFISHRWLNTDSDK----PDSDDNF--KFKITKLGLDMLKRQSGGGVRMLVWLDYSCMNQLDRLLMASGIASLPAYVERSSVILS 173
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108630.701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FSV0_ECTSI1.160e-6895.61Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2IEM7_9EUKA2.260e-1138.00Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S1DLE0_HEMAN1.650e-733.70Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A7S0U0U2_HEMAN3.240e-734.78Hypothetical protein (Fragment) n=3 Tax=Hemiselmis... [more]
A0A7S3V685_9STRA8.050e-730.39Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig108630contigH-elongata_contig108630:455..1383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue2.6e-10
Seed eggNOG ortholog2880.D7FJI6
KEGG koko:K03283,ko:K20178
KEGG TC1.A.33.1
KEGG Pathwayko03040,ko04010,ko04138,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04138,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ModuleM00353,M00355
EggNOG free text desc.regulation of ryanodine-sensitive calcium-release channel activity
EggNOG OGsCOG4642@1,KOG0231@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_001860.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929614.2500076-CDS-H-elongata_contig108630:454..7031622929614.2500076-CDS-H-elongata_contig108630:454..703Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108630 455..703 +
1691679091.7563412-CDS-H-elongata_contig108630:454..7031691679091.7563412-CDS-H-elongata_contig108630:454..703Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108630 455..703 +
1622929614.2624836-CDS-H-elongata_contig108630:1287..13831622929614.2624836-CDS-H-elongata_contig108630:1287..1383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108630 1288..1383 +
1691679091.7705145-CDS-H-elongata_contig108630:1287..13831691679091.7705145-CDS-H-elongata_contig108630:1287..1383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108630 1288..1383 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig108630.701.1prot_H-elongata_contig108630.701.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig108630 455..1383 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig108630.701.1

>prot_H-elongata_contig108630.701.1 ID=prot_H-elongata_contig108630.701.1|Name=mRNA_H-elongata_contig108630.701.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
PPSFQTRALVRYRDLPDRSRSFVVFVSHAWMRPHTTPSFAHPDTSSRGGE
KYRLIAEAGDRIRAHLPPDVRVLLWIDYSCVDQDSTRRSKATMRGMREYM
RRCDAILTVYPGEA*
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mRNA from alignment at H-elongata_contig108630:455..1383+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig108630.701.1 ID=mRNA_H-elongata_contig108630.701.1|Name=mRNA_H-elongata_contig108630.701.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=929bp|location=Sequence derived from alignment at H-elongata_contig108630:455..1383+ (Himanthalia elongata Himel1 dioecious)
CCGCCCTCCTTCCAAACCAGGGCGCTGGTACGATACCGCGACCTTCCGGA
CCGCAGTCGATCATTCGTGGTGTTCGTTTCCCACGCCTGGATGCGGCCAC
ACACTACGCCCTCCTTTGCCCATCCGGACACTTCCTCTCGGGGAGGGGAA
AAGTATCGCCTCATCGCCGAGGCGGGGGATCGCATCAGGGCCCATCTGCC
GCCCGACGTCCGGGTTCTCCTCTGGATTGACTACTCGTGTGTCGACCAGG
TACATTGTGTTAGATATTTGAAAATGCTGGTAGAAATATTTGTTTTTGTT
TTGTTTTTGTTTTTGTTTTCGTCATTTTGAAGAATGGTCGCTGCTGCCTT
TTGTTCGCCTTTTTGTTTGTTTGTTTAGTGTGTGTTTTTTTTCCTCTTCT
CCTTTTTTTCGCAATTTGTTTTTCGCAAATCGCGTAATCGCTGCTTTTAG
TTCGCCTGCTTTGTTTGTCTTTTTTTGTGTGTTTTTTGCAACAGAGTCGG
TAGGGTATTGAGGAGAATAGGGCTTGCTGTTTCGTGTATATATAGCGCGT
AGGGTTTCTCTGGCGGGGGTAAGCGGAAGGGGGCGGGGGAGGGGGTTGTT
AATAGTGCGTAGCGGACGTTCTTACGCAATGTGTCTCTAGCAAAACCATA
CGGCGCGTTTTATTTCGATTTTTATCGAGTGGTCTCGCCTCGTCCGTTCA
CATCTGACGCAGGCGTCAAACCTTTCCCTGTCGCACTCATATATGTTTTT
AATATATGTTGGCGGCTCAGAGCCCTCTCTCTGTATCTCTTTCTGTTTTG
TTTCTAATTTGAACATCTTGGCGACGGCATCAGGACTCCACTCGGAGAAG
CAAGGCTACCATGCGAGGCATGAGAGAGTACATGCGACGCTGCGACGCCA
TCCTCACGGTGTACCCAGGAGAAGCGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig108630:455..1383+

>mRNA_H-elongata_contig108630.701.1 ID=mRNA_H-elongata_contig108630.701.1|Name=mRNA_H-elongata_contig108630.701.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig108630:455..1383+ (Himanthalia elongata Himel1 dioecious)
CCGCCCTCCTTCCAAACCAGGGCGCTGGTACGATACCGCGACCTTCCGGA
CCGCAGTCGATCATTCGTGGTGTTCGTTTCCCACGCCTGGATGCGGCCAC
ACACTACGCCCTCCTTTGCCCATCCGGACACTTCCTCTCGGGGAGGGGAA
AAGTATCGCCTCATCGCCGAGGCGGGGGATCGCATCAGGGCCCATCTGCC
GCCCGACGTCCGGGTTCTCCTCTGGATTGACTACTCGTGTGTCGACCAGC
CGCCCTCCTTCCAAACCAGGGCGCTGGTACGATACCGCGACCTTCCGGAC
CGCAGTCGATCATTCGTGGTGTTCGTTTCCCACGCCTGGATGCGGCCACA
CACTACGCCCTCCTTTGCCCATCCGGACACTTCCTCTCGGGGAGGGGAAA
AGTATCGCCTCATCGCCGAGGCGGGGGATCGCATCAGGGCCCATCTGCCG
CCCGACGTCCGGGTTCTCCTCTGGATTGACTACTCGTGTGTCGACCAGGA
CTCCACTCGGAGAAGCAAGGCTACCATGCGAGGCATGAGAGAGTACATGC
GACGCTGCGACGCCATCCTCACGGTGTACCCAGGAGAAGCGTGAGACTCC
ACTCGGAGAAGCAAGGCTACCATGCGAGGCATGAGAGAGTACATGCGACG
CTGCGACGCCATCCTCACGGTGTACCCAGGAGAAGCGTGA
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