mRNA_H-elongata_contig100023.7.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100023.7.1
Unique NamemRNA_H-elongata_contig100023.7.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig100023.7.1 vs. uniprot
Match: D8LJX2_ECTSI (Farnesyltransferase, CAAX box, alpha n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJX2_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 3.100e-29
Identity = 61/88 (69.32%), Postives = 65/88 (73.86%), Query Frame = 1 
Query:   31 HTDKVAGNYLRAFQASGETSERALFITRLVLEDNPSHYTAWWFRRMYRDVSFFVTFESRCIFALGMDLENELDVAEDIVGYNPKNYQV 294
            H   VA +YLRAFQASGETSER+L ITRLVLE N SHYTAWWFRR             RC+FALGMDL NEL+VAEDI G NPKNYQV
Sbjct:   35 HNYTVATDYLRAFQASGETSERSLAITRLVLEYNASHYTAWWFRR-------------RCLFALGMDLANELEVAEDIAGDNPKNYQV 109
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BLAST of mRNA_H-elongata_contig100023.7.1 vs. uniprot
Match: A0A2I1C632_ASPN1 (CaaX farnesyltransferase alpha subunit Ram2 n=19 Tax=Aspergillus TaxID=5052 RepID=A0A2I1C632_ASPN1)

HSP 1 Score: 58.9 bits (141), Expect = 5.110e-8
Identity = 31/84 (36.90%), Postives = 47/84 (55.95%), Query Frame = 1 
Query:   46 AGNYLRAFQASGETSERALFITRLVLEDNPSHYTAWWFRRMYRDVSFFVTFESRCIFALGMDLENELDVAEDIVGYNPKNYQVW 297
            A +YLRA  A+ E SERAL +T  ++  NP+HYT W +R             ++ +FALG +L  E++    +   + KNYQ+W
Sbjct:   42 ATSYLRAVMAANEMSERALRLTGDIISMNPAHYTVWIYR-------------AKILFALGKNLNEEIEWLNKVALKHLKNYQIW 112
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BLAST of mRNA_H-elongata_contig100023.7.1 vs. uniprot
Match: A0A0C3PXD4_PISTI (Uncharacterized protein n=2 Tax=Pisolithus TaxID=37467 RepID=A0A0C3PXD4_PISTI)

HSP 1 Score: 53.1 bits (126), Expect = 5.510e-6
Identity = 29/86 (33.72%), Postives = 44/86 (51.16%), Query Frame = 1 
Query:   40 KVAGNYLRAFQASGETSERALFITRLVLEDNPSHYTAWWFRRMYRDVSFFVTFESRCIFALGMDLENELDVAEDIVGYNPKNYQVW 297
            K A +Y R    +GE S R L +T  ++  NP+HY+AW +R              + + ALG+ LE EL + +++     K YQVW
Sbjct:   42 KDATDYFRGIVKTGEKSLRVLDLTENIIRQNPAHYSAWQYRY-------------KTLMALGVPLEEELRLMDELAVKYLKTYQVW 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100023.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LJX2_ECTSI3.100e-2969.32Farnesyltransferase, CAAX box, alpha n=2 Tax=Ectoc... [more]
A0A2I1C632_ASPN15.110e-836.90CaaX farnesyltransferase alpha subunit Ram2 n=19 T... [more]
A0A0C3PXD4_PISTI5.510e-633.72Uncharacterized protein n=2 Tax=Pisolithus TaxID=3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100023contigH-elongata_contig100023:1538..2285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue6.2e-24
Seed eggNOG ortholog2880.D8LJX2
Preferred nameRAM2
KEGG rclassRC00069,RC03004
KEGG koko:K05955
KEGG ReactionR09844
KEGG Pathwayko00900,ko01130,map00900,map01130
GOsGO:0001101,GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0004660,GO:0004661,GO:0004662,GO:0004663,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005953,GO:0005965,GO:0006464,GO:0006807,GO:0006950,GO:0007323,GO:0008104,GO:0008150,GO:0008152,GO:0008318,GO:0008360,GO:0009414,GO:0009415,GO:0009628,GO:0009787,GO:0009788,GO:0009966,GO:0009968,GO:0009987,GO:0010035,GO:0010467,GO:0010646,GO:0010648,GO:0016740,GO:0016765,GO:0018342,GO:0018343,GO:0018344,GO:0019538,GO:0022603,GO:0022604,GO:0023051,GO:0023057,GO:0032991,GO:0033036,GO:0034613,GO:0036211,GO:0042221,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048509,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051604,GO:0051641,GO:0065007,GO:0065008,GO:0070727,GO:0071704,GO:0072657,GO:0072659,GO:0097354,GO:0140096,GO:1901419,GO:1901420,GO:1901564,GO:1901700,GO:1902494,GO:1905957,GO:1905958,GO:1990234,GO:1990778
EggNOG free text desc.CAAX-protein geranylgeranyltransferase activity
EggNOG OGsCOG5536@1,KOG0530@2759
EC2.5.1.58,2.5.1.59
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01006
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein prenyltransferase, alpha subunit
Ec32 orthologEc-01_010010.1
Exons2
Model size300
Cds size300
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929543.2332437-CDS-H-elongata_contig100023:1537..17031622929543.2332437-CDS-H-elongata_contig100023:1537..1703Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100023 1538..1703 +
1691679061.7756267-CDS-H-elongata_contig100023:1537..17031691679061.7756267-CDS-H-elongata_contig100023:1537..1703Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100023 1538..1703 +
1622929543.2508929-CDS-H-elongata_contig100023:2151..22851622929543.2508929-CDS-H-elongata_contig100023:2151..2285Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100023 2152..2285 +
1691679061.8138425-CDS-H-elongata_contig100023:2151..22851691679061.8138425-CDS-H-elongata_contig100023:2151..2285Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100023 2152..2285 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100023.7.1prot_H-elongata_contig100023.7.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100023 1538..2285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100023.7.1

>prot_H-elongata_contig100023.7.1 ID=prot_H-elongata_contig100023.7.1|Name=mRNA_H-elongata_contig100023.7.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MTNGNLLRGEHTDKVAGNYLRAFQASGETSERALFITRLVLEDNPSHYTA
WWFRRMYRDVSFFVTFESRCIFALGMDLENELDVAEDIVGYNPKNYQVW*
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mRNA from alignment at H-elongata_contig100023:1538..2285+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100023.7.1 ID=mRNA_H-elongata_contig100023.7.1|Name=mRNA_H-elongata_contig100023.7.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=748bp|location=Sequence derived from alignment at H-elongata_contig100023:1538..2285+ (Himanthalia elongata Himel1 dioecious)
ATGACGAACGGCAACCTTCTGCGCGGCGAACACACAGACAAGGTCGCCGG
GAACTACTTGAGAGCCTTCCAGGCCTCCGGAGAGACGAGCGAGAGGGCGC
TTTTCATCACACGACTGGTCCTAGAAGATAACCCGTCGCACTACACAGCA
TGGTGGTTCCGTCGAAGTTGAGAATGACGAGGCGGGGTGGGGGGACTGCT
GCCGCGGAGCATGCACGCTTTGACTCGCGTCGGCGATCATGATCCACCTC
TCCATCTCTTCCCGTCCCTGGGGCGAGCGAAAAGTTGTTTTTGATCCTTC
TACCTGTGTTGAATCGATGTTCTGCTATCTCTTTCTTCCCTCCCAGAAGA
TAGTCTCTCTCTCTCTCTTTTGAGTAACAACCCTAAAGTGTCGAGAGCAA
AATAAAGTAAATCTCCGATTGGTAACGTTCGTTTCGGGACATCCAGCGGG
TACGGGGCATGGGGGGGGTATCGGGCGTTCAATCAACATTTAACCAGCTA
CGCAGCGACGATAACAGTCCCGCTGCCGCCGTTCGACGGAGTTGCCACCG
TTGACGCCTGAATTGGCTTACAGCCTAGTATTAGTATAGATCGGCAATGT
TTTAAATTCATAAGTGTATCGTGATGTGTCTTTCTTTGTAACCTTTGAGA
GCAGATGCATCTTCGCCTTGGGAATGGATCTGGAGAATGAGTTGGACGTC
GCGGAAGATATCGTGGGTTATAACCCGAAGAACTACCAGGTTTGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig100023:1538..2285+

>mRNA_H-elongata_contig100023.7.1 ID=mRNA_H-elongata_contig100023.7.1|Name=mRNA_H-elongata_contig100023.7.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig100023:1538..2285+ (Himanthalia elongata Himel1 dioecious)
ATGACGAACGGCAACCTTCTGCGCGGCGAACACACAGACAAGGTCGCCGG
GAACTACTTGAGAGCCTTCCAGGCCTCCGGAGAGACGAGCGAGAGGGCGC
TTTTCATCACACGACTGGTCCTAGAAGATAACCCGTCGCACTACACAGCA
TGGTGGTTCCGTCGAAATGACGAACGGCAACCTTCTGCGCGGCGAACACA
CAGACAAGGTCGCCGGGAACTACTTGAGAGCCTTCCAGGCCTCCGGAGAG
ACGAGCGAGAGGGCGCTTTTCATCACACGACTGGTCCTAGAAGATAACCC
GTCGCACTACACAGCATGGTGGTTCCGTCGAATGTATCGTGATGTGTCTT
TCTTTGTAACCTTTGAGAGCAGATGCATCTTCGCCTTGGGAATGGATCTG
GAGAATGAGTTGGACGTCGCGGAAGATATCGTGGGTTATAACCCGAAGAA
CTACCAGGTTTGGTGATGTATCGTGATGTGTCTTTCTTTGTAACCTTTGA
GAGCAGATGCATCTTCGCCTTGGGAATGGATCTGGAGAATGAGTTGGACG
TCGCGGAAGATATCGTGGGTTATAACCCGAAGAACTACCAGGTTTGGTGA
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