mRNA_H-elongata_contig108594.700.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig108594.700.1
Unique NamemRNA_H-elongata_contig108594.700.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig108594.700.1 vs. uniprot
Match: D8LK26_ECTSI (Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK26_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 2.250e-40
Identity = 125/135 (92.59%), Postives = 132/135 (97.78%), Query Frame = 1 
Query:    1 SRSGR-KPRPGGVHAHVAAYEGDLTKLRRYVQAGGDLEKRDSYRATPLLLASEKGHEACVAFLLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRGRVPKRLSSRKEISNLLAAKETESKV 402
            SR+GR KPRPGGVHAHVAAYEGDL KLRRY +AGGDLEKRDSYRATPLLLA+EKGHEACVA+LLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRGR+PKRL+SRKEISNLLAAKETESK+
Sbjct:   54 SRTGRSKPRPGGVHAHVAAYEGDLGKLRRYSEAGGDLEKRDSYRATPLLLAAEKGHEACVAYLLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRGRIPKRLASRKEISNLLAAKETESKL 188
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BLAST of mRNA_H-elongata_contig108594.700.1 vs. uniprot
Match: D8LK98_ECTSI (Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK98_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 4.420e-6
Identity = 23/48 (47.92%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:   34 VHAHVAAYEGDLTKLRRYVQAGGDLEKRDSYRATPLLLASEKGHEACV 177
            +H H AAY G    L+ Y+  GGDLE RD ++AT L+L +E+GH   V
Sbjct:  817 IHVHTAAYNGKQDVLKAYISQGGDLEIRDQFQATALMLCAERGHTQMV 864
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108594.700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LK26_ECTSI2.250e-4092.59Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK26... [more]
D8LK98_ECTSI4.420e-647.92Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig108594contigH-elongata_contig108594:488..2117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.1
Seed ortholog evalue1.6e-33
Seed eggNOG ortholog2880.D8LK26
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-06_007930.1
Exons3
Model size411
Cds size411
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig108594.700.1prot_H-elongata_contig108594.700.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig108594 488..2117 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929614.1640038-CDS-H-elongata_contig108594:487..6461622929614.1640038-CDS-H-elongata_contig108594:487..646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108594 488..646 +
1691679091.7284021-CDS-H-elongata_contig108594:487..6461691679091.7284021-CDS-H-elongata_contig108594:487..646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108594 488..646 +
1622929614.185754-CDS-H-elongata_contig108594:1219..13501622929614.185754-CDS-H-elongata_contig108594:1219..1350Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108594 1220..1350 +
1691679091.7380886-CDS-H-elongata_contig108594:1219..13501691679091.7380886-CDS-H-elongata_contig108594:1219..1350Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108594 1220..1350 +
1622929614.2034123-CDS-H-elongata_contig108594:1996..21171622929614.2034123-CDS-H-elongata_contig108594:1996..2117Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108594 1997..2117 +
1691679091.7473955-CDS-H-elongata_contig108594:1996..21171691679091.7473955-CDS-H-elongata_contig108594:1996..2117Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108594 1997..2117 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig108594.700.1

>prot_H-elongata_contig108594.700.1 ID=prot_H-elongata_contig108594.700.1|Name=mRNA_H-elongata_contig108594.700.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
SRSGRKPRPGGVHAHVAAYEGDLTKLRRYVQAGGDLEKRDSYRATPLLLA
SEKGHEACVAFLLDAGADITARDEHDYTALHLAAFYGRVVVVSLLLSRGA
DTSAVDDRGRVPKRLSSRKEISNLLAAKETESKVRSD
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mRNA from alignment at H-elongata_contig108594:488..2117+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig108594.700.1 ID=mRNA_H-elongata_contig108594.700.1|Name=mRNA_H-elongata_contig108594.700.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1630bp|location=Sequence derived from alignment at H-elongata_contig108594:488..2117+ (Himanthalia elongata Himel1 dioecious)
AGCCGTAGCGGGCGCAAACCTCGACCAGGAGGGGTCCACGCGCACGTAGC
AGCCTACGAGGGAGACCTCACGAAGCTCCGACGTTACGTTCAGGCCGGGG
GAGACCTCGAAAAACGGGACAGCTATCGGGCGACACCGCTGCTGCTGGCA
TCAGAAAAGGTAAAATAATAAATGAGCGGTGCTTGATAAACAGAAGTGAA
GGGCATCTCCTTAAAAGCAGCGCAGTATTGTGTCGAGCTTTTTCGTGGTG
GTGGACGCATCTTGATGAATGAAAGGTGTGTCCGCAATCGCCTCCCCCGC
GACTTGAGGCAACTCCTCATAAAATAATGCCAGATACAAGAAATTACGCG
ATCGCCGTCACCTGCCGACTGGTTGATCACAAAAACGGAAACGAGAAGGA
GAGGTTTAAGAAAAAGAGCGACATAAAAAAAAACTAAAACTTCCCCACCC
GAAACAGACTGCGTCAGAGGTCGTCGCCACTTTCGCCTCTATAATATACC
GTATATGTTTTGTACTTTCGTATATGTATATATATATATATATAGGTGTC
TACCGTCTCGCTGTCAACAAAATATTACGAGTGCGCCCTGCTTCAGTCCC
ATGCCCGAAGCCACGGCTTTTGTGCTGCTCGTAACTCGTCTCGTCTTATC
GACCTCCCACGGATGGTCGGACTGCGACTGGCCTGCCTCAACAACAACGA
CCAATGTTGTCTCGACTATGATAATGCCAAAGGGCCACGAAGCCTGTGTC
GCCTTCTTGCTGGACGCGGGCGCCGACATCACCGCCAGGGACGAGCACGA
CTATACGGCTCTGCACCTCGCGGCGTTCTACGGTCGGGTCGTAGTGGTTT
CCCTCCTGCTCAGGTGCGTCAGAGGAAAGCTCTCGTTGAATGTTGCTGGG
TGAAGGGGCGCTGGCGTTGCGATGCGGAAGTATGTGTGCATGCGCGCGTC
TCGTCAGCCCGCCCGTTCGTCCGCGGGTTCTCCCGTTCATCCTCACCGTG
CCGTGTGTTGTTTTCTAAGGCCTTGTTGGAGCGTGGGACGTCGCGGTTGC
TCTAAACGATGCTTGTAGTGATCCTTGAAGTCCCGTTGGTTTCATGTGGC
TTAAGCAATTGGTGACTCAACACGAAATTATTTATGTACCTTATTCCATT
ACTCTTCTGGTAACAAAATACGTTTCCGGTGCGCGTGAAGCTACGCCTTC
CTACGGAAACCCTTGCGTTGTTGATGCCAGGGTTGGTCTTATAAAGCCTT
CCGCCGTAGGGTATAGCTCGGCACCGCGCTGGTATGGCCTCCCTCCAGTC
GAGTCCGGCTGGAGTCGACATGTTCCCCCCTTAACCCTTTTGGAACTGGA
TTTCAAGTTTTATATTGAATTTAGTATGTAAAAAACAAATCGATGTTCCA
TAGGGGTTAATGTCTCCCCTTCCGTCATTATTTCTTTTTTCCTTCGCCTC
TCTCTCTATATATATACATACATACATACTAAATGTGTAATATTTTCCTC
TCTTGCCAGCCGTGGGGCTGATACATCGGCGGTCGATGATCGAGGACGCG
TGCCGAAGCGCTTGTCATCCCGCAAGGAGATCAGTAACCTCTTGGCGGCG
AAAGAAACTGAGTCTAAGGTACGATCCGAT
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Coding sequence (CDS) from alignment at H-elongata_contig108594:488..2117+

>mRNA_H-elongata_contig108594.700.1 ID=mRNA_H-elongata_contig108594.700.1|Name=mRNA_H-elongata_contig108594.700.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig108594:488..2117+ (Himanthalia elongata Himel1 dioecious)
AGCCGTAGCGGGCGCAAACCTCGACCAGGAGGGGTCCACGCGCACGTAGC
AGCCTACGAGGGAGACCTCACGAAGCTCCGACGTTACGTTCAGGCCGGGG
GAGACCTCGAAAAACGGGACAGCTATCGGGCGACACCGCTGCTGCTGGCA
TCAGAAAAGAGCCGTAGCGGGCGCAAACCTCGACCAGGAGGGGTCCACGC
GCACGTAGCAGCCTACGAGGGAGACCTCACGAAGCTCCGACGTTACGTTC
AGGCCGGGGGAGACCTCGAAAAACGGGACAGCTATCGGGCGACACCGCTG
CTGCTGGCATCAGAAAAGGGCCACGAAGCCTGTGTCGCCTTCTTGCTGGA
CGCGGGCGCCGACATCACCGCCAGGGACGAGCACGACTATACGGCTCTGC
ACCTCGCGGCGTTCTACGGTCGGGTCGTAGTGGTTTCCCTCCTGCTCAGG
GCCACGAAGCCTGTGTCGCCTTCTTGCTGGACGCGGGCGCCGACATCACC
GCCAGGGACGAGCACGACTATACGGCTCTGCACCTCGCGGCGTTCTACGG
TCGGGTCGTAGTGGTTTCCCTCCTGCTCAGCCGTGGGGCTGATACATCGG
CGGTCGATGATCGAGGACGCGTGCCGAAGCGCTTGTCATCCCGCAAGGAG
ATCAGTAACCTCTTGGCGGCGAAAGAAACTGAGTCTAAGGTACGATCCGA
TCCGTGGGGCTGATACATCGGCGGTCGATGATCGAGGACGCGTGCCGAAG
CGCTTGTCATCCCGCAAGGAGATCAGTAACCTCTTGGCGGCGAAAGAAAC
TGAGTCTAAGGTACGATCCGAT
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