prot_H-elongata_contig108548.697.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig108548.697.1
Unique Nameprot_H-elongata_contig108548.697.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length599
Homology
BLAST of mRNA_H-elongata_contig108548.697.1 vs. uniprot
Match: A0A6H5KW24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW24_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 9.110e-52
Identity = 180/453 (39.74%), Postives = 221/453 (48.79%), Query Frame = 0
Query:    1 QNNVPLERLRLAEDEFLAPPLPTAVTATAIATDATXXXXXXXXXXXXXXXXXXTGTPLKVEAAVAAA--------GSSVASLSVHSPSAGSSSSACVLTAAPPAPSISSTFSSSLTTRSGSSAARSTSAYGVGGRGAGEGSKGISSSSSLHGAVRRATITTVSAXXXXXXXXXXXXARMSTGRGVTDGRGGPVSVKKQDR-PRLSTGKYGRAPASVSAGGDASAGYPGATAAAPRKAVLSGGQLSHARSASDFSVRRGIIATANTS----------------ATRRVWVRDRVDSMKWRPGCLVADGERTLAATAAMASGGGGSGTDG-ASGLAARLDDGTIQTLRPDGLMDFPTVGGSAAAMAXXXXXXXXXXAGRGVRTPAAKLASLTGALRRHGRNAGLGWTGRDGXXXXXXXXXXATFCKEPATPHSWLCSRQPRTPLGFLPRLGRNSS 427
            ++NVPLERLRL EDE+LAPP P A    A A+                       TP +VEA  AA+        GSS  SLSV +  + +S+   ++ AAP +PS++S   S+ +     S AR      + G       K ++SSSSL   V   +    ++               S     T   GG     KQDR  +LS GKY R   + +A G                  L G QL H  S      R G    A                   ATRRVWVRDR+D+M+WRPGCL+ +GE   AAT A      G+G +  AS   ARLDDGT+Q  RPDGLMDFPT GG+AAA             GR  R PAAKLAS+TGALRRH R+AG+G  G             ATFCKEPATPH+WLCSRQPRTPLGFLPR GR ++
Sbjct: 2131 EDNVPLERLRLGEDEYLAPPSPPATAKAAAASR----------------------TPPRVEAEPAASTAAAPSTPGSSTTSLSVQALLSPASTCPSIM-AAPASPSLASPAPSAASGAXXXSPARGXXXGALVG-------KPVASSSSLTQYVAAGSKGGRNSPKRGSAQRGSPRRATSASAVATASAGGSG---KQDRGSKLSAGKYVRTTTTSAAAG------------------LRGQQLVHGSSDPTSHRRGGAADKAGVGMWGSGSXXXXXXXXXXATRRVWVRDRIDAMRWRPGCLMTEGEAGFAATLASL----GAGVESPASNFVARLDDGTVQVPRPDGLMDFPTAGGTAAAAEAAAGSGT----GRAGRNPAAKLASITGALRRHSRSAGIG--GGSAGSEDDSGSSAATFCKEPATPHAWLCSRQPRTPLGFLPRFGRGAN 2522          
BLAST of mRNA_H-elongata_contig108548.697.1 vs. uniprot
Match: D8LBS8_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS8_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 4.770e-47
Identity = 109/170 (64.12%), Postives = 122/170 (71.76%), Query Frame = 0
Query:  258 ATRRVWVRDRVDSMKWRPGCLVADGERTLAATAAMASGGGGSGTDGASGLAARLDDGTIQTLRPDGLMDFPTVGGSAAAMAXXXXXXXXXXAGRGVRTPAAKLASLTGALRRHGRNAGLGWTGRDGXXXXXXXXXXATFCKEPATPHSWLCSRQPRTPLGFLPRLGRNSS 427
            ATRRVWVRDR+D+M+WRPGCL+ +GE   AAT A    GG S    AS   ARLDDGT+Q  RPDGLMDFPT GG+AAA            AGR  R PAAKLAS+TGALRRH R+AG+G  G   XXXXX     ATFCKEPATPH+WLCSRQPRTPLGFLPR GR ++
Sbjct:  831 ATRRVWVRDRIDAMRWRPGCLMTEGEAAFAATLASVGAGGESP---ASNFMARLDDGTVQVPRPDGLMDFPTAGGTAAAAEAAAGSG----AGRAGRNPAAKLASITGALRRHSRSAGIG--GXXXXXXXXSGGSAATFCKEPATPHAWLCSRQPRTPLGFLPRFGRGAN 991          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108548.697.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KW24_9PHAE9.110e-5239.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBS8_ECTSI4.770e-4764.12HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig108548contigH-elongata_contig108548:123..2174 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig108548.697.1mRNA_H-elongata_contig108548.697.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig108548 123..2174 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig108548.697.1 ID=prot_H-elongata_contig108548.697.1|Name=mRNA_H-elongata_contig108548.697.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=599bp
QNNVPLERLRLAEDEFLAPPLPTAVTATAIATDATTNTTLSKTSSTIATT
AMTTGTPLKVEAAVAAAGSSVASLSVHSPSAGSSSSACVLTAAPPAPSIS
STFSSSLTTRSGSSAARSTSAYGVGGRGAGEGSKGISSSSSLHGAVRRAT
ITTVSAAAGSNAVAAAAAARMSTGRGVTDGRGGPVSVKKQDRPRLSTGKY
GRAPASVSAGGDASAGYPGATAAAPRKAVLSGGQLSHARSASDFSVRRGI
IATANTSATRRVWVRDRVDSMKWRPGCLVADGERTLAATAAMASGGGGSG
TDGASGLAARLDDGTIQTLRPDGLMDFPTVGGSAAAMAEAAAAAGGSGAG
RGVRTPAAKLASLTGALRRHGRNAGLGWTGRDGGGGGEDDAAAATFCKEP
ATPHSWLCSRQPRTPLGFLPRLGRNSSGGGSDGGGQGGGGGSGSGGGASN
RGKGGKSGKESVEPPSLRRHFTTVSGGSDVSAAGGGKDRRGGGAGSGGGG
KAHNESSAASTNARGGSSGGRGGGAGRADDSRIVRGGKKISIFSGFGGAS
SNNSKGGGGRSRQRGSASLAGSGAASRAEDEEESVRAVPLQLEDEGLLQ
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