prot_H-elongata_contig108527.694.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig108527.694.1
Unique Name	prot_H-elongata_contig108527.694.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	124

Homology

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BLAST of mRNA_H-elongata_contig108527.694.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI)

HSP 1 Score: 218 bits (554), Expect = 2.490e-71
Identity = 114/123 (92.68%), Postives = 120/123 (97.56%), Query Frame = 0

Query:    1 MTGKGKGGRGDKKSTSRSSKAGLQFPVGRIGRFLKKGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVKK 123
            M+GKGKGGRG KKST+RS+KAGLQFPVGR+GRFLKKGKY+ RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK VKK
Sbjct:    1 MSGKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122

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BLAST of mRNA_H-elongata_contig108527.694.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI)

HSP 1 Score: 216 bits (549), Expect = 8.520e-70
Identity = 113/122 (92.62%), Postives = 119/122 (97.54%), Query Frame = 0

Query:    1 MTGKGKGGRGDKKSTSRSSKAGLQFPVGRIGRFLKKGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVK 122
            M+GKGKGGRG KKST+RS+KAGLQFPVGR+GRFLKKGKY+ RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK VK
Sbjct:   46 MSGKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 166

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BLAST of mRNA_H-elongata_contig108527.694.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 8.620e-68
Identity = 110/119 (92.44%), Postives = 116/119 (97.48%), Query Frame = 0

Query:    1 MTGKGKGGRGDKKSTSRSSKAGLQFPVGRIGRFLKKGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 119
            M+GKGKGGRG KKSTS+SSKAGLQFPV RIGR+LK+GKY+ RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct:    1 MSGKGKGGRG-KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 118

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BLAST of mRNA_H-elongata_contig108527.694.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI)

HSP 1 Score: 209 bits (532), Expect = 4.430e-67
Identity = 110/119 (92.44%), Postives = 116/119 (97.48%), Query Frame = 0

Query:    1 MTGKGKGGRGDKKSTSRSSKAGLQFPVGRIGRFLKKGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 119
            M+GKGKGGRG KKSTS+SSKAGLQFPV RIGR+LK+GKY+ RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct:   52 MSGKGKGGRG-KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 169

[Close]

BLAST of mRNA_H-elongata_contig108527.694.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 2.430e-66
Identity = 107/119 (89.92%), Postives = 114/119 (95.80%), Query Frame = 0

Query:    1 MTGKGKGGRGDKKSTSRSSKAGLQFPVGRIGRFLKKGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 119
            M+GKGKGGRG KK TSRS+KAGLQFPVGRIGRF+K+GKYS RVG GAPVY+AAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELN+LLG+ TIASGGVLPNIHAVLLPKK
Sbjct:    1 MSGKGKGGRG-KKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118

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BLAST of mRNA_H-elongata_contig108527.694.1 vs. uniprot
Match: A0A835ZLE9_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE9_9STRA)

HSP 1 Score: 203 bits (516), Expect = 2.790e-65
Identity = 101/121 (83.47%), Postives = 116/121 (95.87%), Query Frame = 0

Query:    3 GKGKGGRGDKKSTSRSSKAGLQFPVGRIGRFLKKGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVKK 123
            GKGKGGRGDKK+ S+S+KAGLQFPVGR+GRFLK+G+Y++RVGAGAPVY+AAV+EYL AEVLEL+GNAARDNKK+RI+PRHIQLAVRNDEELNKLLG+VTIA+GGVLPNIHAVLLPKK   K
Sbjct:    5 GKGKGGRGDKKAVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKKTRSK 125

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BLAST of mRNA_H-elongata_contig108527.694.1 vs. uniprot
Match: A0A836CG77_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG77_9STRA)

HSP 1 Score: 201 bits (511), Expect = 1.130e-64
Identity = 106/121 (87.60%), Postives = 113/121 (93.39%), Query Frame = 0

Query:    1 MTGKGKGGRGD--KKSTSRSSKAGLQFPVGRIGRFLKKGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 119
            M GKGKGGRG   KKSTS+SSKAGLQFPV R+GRFLK G+Y++RVGAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHIQLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKK
Sbjct:    1 MAGKGKGGRGAEAKKSTSKSSKAGLQFPVARLGRFLKVGRYAERVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKK 121

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BLAST of mRNA_H-elongata_contig108527.694.1 vs. uniprot
Match: A0A448ZH28_9STRA (Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 RepID=A0A448ZH28_9STRA)

HSP 1 Score: 201 bits (510), Expect = 1.270e-64
Identity = 101/119 (84.87%), Postives = 114/119 (95.80%), Query Frame = 0

Query:    1 MTGKGKGGRGDKKSTSRSSKAGLQFPVGRIGRFLKKGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 119
            M+GKGKGGRG+KKST+ S+KAGLQFPVGRIGR+L++GKY+ R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIASGGVLPNIHA+LLPKK
Sbjct:    1 MSGKGKGGRGEKKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAILLPKK 119

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BLAST of mRNA_H-elongata_contig108527.694.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA)

HSP 1 Score: 201 bits (510), Expect = 1.270e-64
Identity = 103/122 (84.43%), Postives = 114/122 (93.44%), Query Frame = 0

Query:    1 MTGKGKGGRGDKKSTSRSSKAGLQFPVGRIGRFLKKGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVK 122
            M+GKGKGGRG KKST+ S+KAGLQFPVGRIGR+L++GKY+ R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKK  K
Sbjct:    1 MSGKGKGGRGGKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122

[Close]

BLAST of mRNA_H-elongata_contig108527.694.1 vs. uniprot
Match: B7FWQ2_PHATC (Histone H2A n=9 Tax=Bacillariophyta TaxID=2836 RepID=B7FWQ2_PHATC)

HSP 1 Score: 198 bits (504), Expect = 1.190e-63
Identity = 100/117 (85.47%), Postives = 112/117 (95.73%), Query Frame = 0

Query:    3 GKGKGGRGDKKSTSRSSKAGLQFPVGRIGRFLKKGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 119
            GKGKGGRGDKKST+ S+KAGLQFPVGRIGR+L++GKY+ R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIA+GGVLPNIHA+LLPKK
Sbjct:    5 GKGKGGRGDKKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIAAGGVLPNIHAILLPKK 121

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig108527.694.1 vs. uniprot

BLAST of mRNA_H-elongata_contig108527.694.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FWI9_ECTSI	2.490e-71	92.68	Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7...	[more]
D7G193_ECTSI	8.520e-70	92.62	Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2...	[more]
A0A6H5KG79_9PHAE	8.620e-68	92.44	Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta...	[more]
D7FVQ5_ECTSI	4.430e-67	92.44	Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2...	[more]
D8LLP0_ECTSI	2.430e-66	89.92	Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8...	[more]
A0A835ZLE9_9STRA	2.790e-65	83.47	Histone H2A n=2 Tax=Tribonema minus TaxID=303371 R...	[more]
A0A836CG77_9STRA	1.130e-64	87.60	Histone H2A n=2 Tax=Tribonema minus TaxID=303371 R...	[more]
A0A448ZH28_9STRA	1.270e-64	84.87	Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 Re...	[more]
A0A6U2JFS4_9STRA	1.270e-64	84.43	Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 Rep...	[more]
B7FWQ2_PHATC	1.190e-63	85.47	Histone H2A n=9 Tax=Bacillariophyta TaxID=2836 Rep...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 123..123
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 2..121
None	No IPR available	PANTHER	PTHR23430:SF233	HISTONE H2A.6-RELATED	coord: 2..121
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 42..57 score: 90.36 coord: 57..70 score: 90.54 coord: 99..117 score: 76.04 coord: 13..35 score: 71.55 coord: 71..85 score: 74.98
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 3..122 e-value: 3.7E-79 score: 279.0
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 8..88 e-value: 8.8E-17 score: 61.7
IPR009072	Histone-fold	GENE3D	1.10.20.10		coord: 2..123 e-value: 4.0E-62 score: 209.6
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 3..122
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 91..123 e-value: 1.7E-18 score: 66.1
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 21..27

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig108527	contig	H-elongata_contig108527:532..903 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig108527.694.1	mRNA_H-elongata_contig108527.694.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig108527 532..909 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig108527.694.1 ID=prot_H-elongata_contig108527.694.1|Name=mRNA_H-elongata_contig108527.694.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
MTGKGKGGRGDKKSTSRSSKAGLQFPVGRIGRFLKKGKYSQRVGAGAPVY
LAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEV
TIASGGVLPNIHAVLLPKKVVKK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002119	Histone_H2A
IPR007125	Histone_H2A/H2B/H3
IPR009072	Histone-fold
IPR032454	Histone_H2A_C
IPR032458	Histone_H2A_CS