mRNA_H-elongata_contig108502.692.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig108502.692.1
Unique NamemRNA_H-elongata_contig108502.692.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig108502.692.1 vs. uniprot
Match: A0A6H5KUQ1_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KUQ1_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 1.150e-42
Identity = 74/81 (91.36%), Postives = 76/81 (93.83%), Query Frame = 1
Query:    1 LTQLLDTGFFHADPHPGNLIRTPEGKLAILDFGLMTQITDNQKFGMIEAISHLVHRDYQGIGDDFKRLDFIPEEASAFDLI 243
            LTQLLDTGFFHADPHPGNLIRTPEGKLAILDFGLMTQITDNQKFGMIEAISHLVHRDY+GIGDDFKRLDFIPEE     +I
Sbjct:  465 LTQLLDTGFFHADPHPGNLIRTPEGKLAILDFGLMTQITDNQKFGMIEAISHLVHRDYEGIGDDFKRLDFIPEEVDVTPII 545          
BLAST of mRNA_H-elongata_contig108502.692.1 vs. uniprot
Match: A0A836CGN4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGN4_9STRA)

HSP 1 Score: 139 bits (351), Expect = 8.410e-37
Identity = 64/81 (79.01%), Postives = 71/81 (87.65%), Query Frame = 1
Query:    1 LTQLLDTGFFHADPHPGNLIRTPEGKLAILDFGLMTQITDNQKFGMIEAISHLVHRDYQGIGDDFKRLDFIPEEASAFDLI 243
            LTQLLDTG FHADPHPGNLIRTP+G+LAILDFGLMT+ITD+QK+GMIEAISHLVHRDY  IGDDFKRLDFIP       ++
Sbjct:  256 LTQLLDTGLFHADPHPGNLIRTPDGRLAILDFGLMTEITDDQKYGMIEAISHLVHRDYGSIGDDFKRLDFIPAHVDVTPIV 336          
BLAST of mRNA_H-elongata_contig108502.692.1 vs. uniprot
Match: A0A7S2FT02_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FT02_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.420e-36
Identity = 57/81 (70.37%), Postives = 68/81 (83.95%), Query Frame = 1
Query:    1 LTQLLDTGFFHADPHPGNLIRTPEGKLAILDFGLMTQITDNQKFGMIEAISHLVHRDYQGIGDDFKRLDFIPEEASAFDLI 243
            LTQLLDTGFFHADPHPGN++RTP+GKL ILDFGLMT+ITD+QK+GMIEA+ HL++RDY  IGDDF  LDFIP       ++
Sbjct:   45 LTQLLDTGFFHADPHPGNMLRTPDGKLVILDFGLMTEITDDQKYGMIEAVVHLINRDYSEIGDDFVNLDFIPRGTDTSPIV 125          
BLAST of mRNA_H-elongata_contig108502.692.1 vs. uniprot
Match: A0A7S2DRM5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DRM5_9STRA)

HSP 1 Score: 135 bits (341), Expect = 2.070e-35
Identity = 60/81 (74.07%), Postives = 71/81 (87.65%), Query Frame = 1
Query:    1 LTQLLDTGFFHADPHPGNLIRTPEGKLAILDFGLMTQITDNQKFGMIEAISHLVHRDYQGIGDDFKRLDFIPEEASAFDLI 243
            LTQLLDTGFFHADPHPGN++RTP+GKL ILDFGLMT+IT+NQK+GMIEAI+HL++RDY  IGDDFK LDFIPE      ++
Sbjct:  284 LTQLLDTGFFHADPHPGNMLRTPDGKLVILDFGLMTEITENQKYGMIEAIAHLINRDYSEIGDDFKNLDFIPEGVDTTPIV 364          
BLAST of mRNA_H-elongata_contig108502.692.1 vs. uniprot
Match: A0A813FK08_POLGL (Hypothetical protein n=4 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FK08_POLGL)

HSP 1 Score: 135 bits (341), Expect = 3.100e-35
Identity = 60/77 (77.92%), Postives = 69/77 (89.61%), Query Frame = 1
Query:    1 LTQLLDTGFFHADPHPGNLIRTPEGKLAILDFGLMTQITDNQKFGMIEAISHLVHRDYQGIGDDFKRLDFIPEEASA 231
            LTQLL TGFFHADPHPGN++RTP+G+LAILDFGLMT+ITD+QKFGM+EAI+HLVHRDY  IG DFK LDFIPE+   
Sbjct:  430 LTQLLQTGFFHADPHPGNMLRTPDGRLAILDFGLMTRITDDQKFGMVEAIAHLVHRDYAAIGQDFKNLDFIPEDVDV 506          
BLAST of mRNA_H-elongata_contig108502.692.1 vs. uniprot
Match: A0A7R9YCG7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCG7_9STRA)

HSP 1 Score: 125 bits (313), Expect = 6.080e-35
Identity = 56/81 (69.14%), Postives = 67/81 (82.72%), Query Frame = 1
Query:    1 LTQLLDTGFFHADPHPGNLIRTPEGKLAILDFGLMTQITDNQKFGMIEAISHLVHRDYQGIGDDFKRLDFIPEEASAFDLI 243
            LTQLL  GFFHADPHPGN+IRTP+G+L ILDFGLMT++TD+QK+GMIEAI HL++RDY  IG DFK LDFIP +     +I
Sbjct:   46 LTQLLGEGFFHADPHPGNMIRTPDGQLCILDFGLMTEVTDDQKYGMIEAIVHLINRDYTDIGQDFKNLDFIPADVDVEPII 126          
BLAST of mRNA_H-elongata_contig108502.692.1 vs. uniprot
Match: A0A2K1J1G5_PHYPA (Protein kinase domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1J1G5_PHYPA)

HSP 1 Score: 134 bits (337), Expect = 6.230e-35
Identity = 63/73 (86.30%), Postives = 67/73 (91.78%), Query Frame = 1
Query:    1 LTQLLDTGFFHADPHPGNLIRTPEGKLAILDFGLMTQITDNQKFGMIEAISHLVHRDYQGIGDDFKRLDFIPE 219
            L QLLDTG FHADPHPGNLIRTPEGKLAILDFGLMTQITDNQK+GMIEAISHL+HRDY+ I +DF  LDFIPE
Sbjct:  231 LKQLLDTGLFHADPHPGNLIRTPEGKLAILDFGLMTQITDNQKYGMIEAISHLIHRDYEAIVEDFVLLDFIPE 303          
BLAST of mRNA_H-elongata_contig108502.692.1 vs. uniprot
Match: A0A176VHJ8_MARPO (Protein kinase domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VHJ8_MARPO)

HSP 1 Score: 134 bits (338), Expect = 7.410e-35
Identity = 62/73 (84.93%), Postives = 68/73 (93.15%), Query Frame = 1
Query:    1 LTQLLDTGFFHADPHPGNLIRTPEGKLAILDFGLMTQITDNQKFGMIEAISHLVHRDYQGIGDDFKRLDFIPE 219
            L QLLDTGFFHADPHPGNLIRTP+GKLAILDFGLMTQITD QK+GMIEAISHL+HRDY+ I +DF +LDFIPE
Sbjct:  395 LKQLLDTGFFHADPHPGNLIRTPDGKLAILDFGLMTQITDQQKYGMIEAISHLIHRDYEAIVEDFVKLDFIPE 467          
BLAST of mRNA_H-elongata_contig108502.692.1 vs. uniprot
Match: A0A2K1IQR5_PHYPA (Protein kinase domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IQR5_PHYPA)

HSP 1 Score: 134 bits (337), Expect = 1.040e-34
Identity = 63/73 (86.30%), Postives = 67/73 (91.78%), Query Frame = 1
Query:    1 LTQLLDTGFFHADPHPGNLIRTPEGKLAILDFGLMTQITDNQKFGMIEAISHLVHRDYQGIGDDFKRLDFIPE 219
            L QLLDTG FHADPHPGNLIRTPEGKLAILDFGLMTQITDNQK+GMIEAISHL+HRDY+ I +DF  LDFIPE
Sbjct:  423 LKQLLDTGLFHADPHPGNLIRTPEGKLAILDFGLMTQITDNQKYGMIEAISHLIHRDYEAIVEDFVLLDFIPE 495          
BLAST of mRNA_H-elongata_contig108502.692.1 vs. uniprot
Match: A0A7I4F8Y9_PHYPA (Protein kinase domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4F8Y9_PHYPA)

HSP 1 Score: 134 bits (337), Expect = 1.040e-34
Identity = 63/73 (86.30%), Postives = 67/73 (91.78%), Query Frame = 1
Query:    1 LTQLLDTGFFHADPHPGNLIRTPEGKLAILDFGLMTQITDNQKFGMIEAISHLVHRDYQGIGDDFKRLDFIPE 219
            L QLLDTG FHADPHPGNLIRTPEGKLAILDFGLMTQITDNQK+GMIEAISHL+HRDY+ I +DF  LDFIPE
Sbjct:  425 LKQLLDTGLFHADPHPGNLIRTPEGKLAILDFGLMTQITDNQKYGMIEAISHLIHRDYEAIVEDFVLLDFIPE 497          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108502.692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUQ1_9PHAE1.150e-4291.36Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A836CGN4_9STRA8.410e-3779.01Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2FT02_9STRA1.420e-3670.37Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2DRM5_9STRA2.070e-3574.07Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A813FK08_POLGL3.100e-3577.92Hypothetical protein n=4 Tax=Polarella glacialis T... [more]
A0A7R9YCG7_9STRA6.080e-3569.14Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A2K1J1G5_PHYPA6.230e-3586.30Protein kinase domain-containing protein n=1 Tax=P... [more]
A0A176VHJ8_MARPO7.410e-3584.93Protein kinase domain-containing protein n=2 Tax=M... [more]
A0A2K1IQR5_PHYPA1.040e-3486.30Protein kinase domain-containing protein n=2 Tax=P... [more]
A0A7I4F8Y9_PHYPA1.040e-3486.30Protein kinase domain-containing protein n=2 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig108502contigH-elongata_contig108502:276..1396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score137.5
Seed ortholog evalue2.9e-30
Seed eggNOG ortholog3218.PP1S27_218V6.1
KEGG koko:K08869
EggNOG free text desc.AarF domain-containing protein kinase
EggNOG OGs37IDU@33090,3G9H8@35493,COG0661@1,KOG1235@2759
COG Functional cat.EG
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size258
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929613.513295-CDS-H-elongata_contig108502:275..3241622929613.513295-CDS-H-elongata_contig108502:275..324Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108502 276..324 +
1691679091.4900768-CDS-H-elongata_contig108502:275..3241691679091.4900768-CDS-H-elongata_contig108502:275..324Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108502 276..324 +
1622929613.5246937-CDS-H-elongata_contig108502:1187..13961622929613.5246937-CDS-H-elongata_contig108502:1187..1396Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108502 1188..1396 +
1691679091.507265-CDS-H-elongata_contig108502:1187..13961691679091.507265-CDS-H-elongata_contig108502:1187..1396Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108502 1188..1396 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig108502.692.1prot_H-elongata_contig108502.692.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig108502 276..1396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig108502.692.1

>prot_H-elongata_contig108502.692.1 ID=prot_H-elongata_contig108502.692.1|Name=mRNA_H-elongata_contig108502.692.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
LTQLLDTGFFHADPHPGNLIRTPEGKLAILDFGLMTQITDNQKFGMIEAI
SHLVHRDYQGIGDDFKRLDFIPEEASAFDLIDPYV*
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mRNA from alignment at H-elongata_contig108502:276..1396+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig108502.692.1 ID=mRNA_H-elongata_contig108502.692.1|Name=mRNA_H-elongata_contig108502.692.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1121bp|location=Sequence derived from alignment at H-elongata_contig108502:276..1396+ (Himanthalia elongata Himel1 dioecious)
CTCACCCAGCTGTTGGATACGGGGTTCTTCCATGCTGATCCCCACCCTGG TGCGTTCTTCCTTGTATAGTACAGTACAGTACAGTATAGTACAGTACTCA GTATGTTCTATGTTTTGTTTAAATATTATGTACCTGTAACTGTAGCTCGA AGATGGTTATATTATGAAGAAGACAAAACAAAACACTGACTTCAGAGGTT TTAAAAGAAAGACACACACACACAAACAGAAAGAAAAGTGCTCGACTTCA CATGCATCAATCCATCGATCGATCGATGGATTGATCCATTCATGTAATCA TCCCCTATCCCCTTATTAATAATCCAATAAGGGGCACGCGTAGACTCAAC GGTTACCAAGGAGAAGTCAATACCATAGGATGCATTGTGCACATATCCGC CCATTCCGAACTCTTGCCCCATCTTCTCATTCCTGTGTGCGACAGACAGA AACACGCCATCCATCCCCCGGGTAAACTGTTTATGTCTGACTGTCTGTCG CTCCGATCAACTGGAACTACCGATTTGGCTTGTTTGCTTGCTTGTTGGGT GTTGTTGGCGTTTTTTGTCTGTCTGTCTGTCTGTTTATTTGTTTGTTTAT TTGTTTGTTTGTTTGCTTCCTACTCTCTTCGTTGATTTATTTTGCAATTT ATTTGTTCCTTTCGACTATCTCTTCCCTCCCCCCTTAATGACCTTCCTCC CCCCACCCCCCCCCCCCCCCCCCCCCCCTCCTCCCCCCCCCCCCCCCCAC CCCCCCCCCCCCACAACCACACCCCCCCCCCCCCCCCCCGNNNNNNNNNN TTTTTCCTTTCGTCTATCCCTTCCCCCCCCCCTTCATCCCCCTCCTCCCT CCCCCCCCCCCCCGACCCTCCTCTTTACGCCCTCCCTCCCCTTAAACGCC TCTCTTCTAAAGGAAACCTCATCCGAACGCCCGAGGGGAAGCTGGCCATC TTGGACTTTGGGCTGATGACCCAGATCACGGACAACCAGAAGTTCGGCAT GATCGAGGCCATCTCGCACCTCGTGCATCGGGACTATCAGGGGATCGGGG ACGACTTCAAGCGCCTCGATTTCATACCGGAGGAGGCGAGCGCCTTCGAT TTGATCGATCCATATGTGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig108502:276..1396+

>mRNA_H-elongata_contig108502.692.1 ID=mRNA_H-elongata_contig108502.692.1|Name=mRNA_H-elongata_contig108502.692.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig108502:276..1396+ (Himanthalia elongata Himel1 dioecious)
CTCACCCAGCTGTTGGATACGGGGTTCTTCCATGCTGATCCCCACCCTGC
TCACCCAGCTGTTGGATACGGGGTTCTTCCATGCTGATCCCCACCCTGGA
AACCTCATCCGAACGCCCGAGGGGAAGCTGGCCATCTTGGACTTTGGGCT
GATGACCCAGATCACGGACAACCAGAAGTTCGGCATGATCGAGGCCATCT
CGCACCTCGTGCATCGGGACTATCAGGGGATCGGGGACGACTTCAAGCGC
CTCGATTTCATACCGGAGGAGGCGAGCGCCTTCGATTTGATCGATCCATA
TGTGTAGGAAACCTCATCCGAACGCCCGAGGGGAAGCTGGCCATCTTGGA
CTTTGGGCTGATGACCCAGATCACGGACAACCAGAAGTTCGGCATGATCG
AGGCCATCTCGCACCTCGTGCATCGGGACTATCAGGGGATCGGGGACGAC
TTCAAGCGCCTCGATTTCATACCGGAGGAGGCGAGCGCCTTCGATTTGAT
CGATCCATATGTGTAG
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