mRNA_H-elongata_contig108501.691.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig108501.691.1
Unique NamemRNA_H-elongata_contig108501.691.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig108501.691.1 vs. uniprot
Match: D8LSN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSN4_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 4.150e-12
Identity = 37/63 (58.73%), Postives = 43/63 (68.25%), Query Frame = -1 
Query:  154 DRKVCDGWCLQDEDGPCFDDPTC-RSG-GIGCNAGGDFYCRFCGF-DLYQDCPNGPTPSPTTI 333
            D   C   CL+ ED PCFDDP+C R G GIGCNA GDFYCRFCGF + + DCP   TP  T++
Sbjct:  318 DYVECSSRCLESEDFPCFDDPSCPRDGNGIGCNASGDFYCRFCGFLEEFVDCPV-VTPGETSV 379
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BLAST of mRNA_H-elongata_contig108501.691.1 vs. uniprot
Match: A0A6H5JJT3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJT3_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 7.210e-12
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = -1 
Query:  181 DRKVCDGWCLQDEDGPCFDDPTC-RSG-GIGCNAGGDFYCRFCGF-DLYQDCPN 333
            D   C   CL+ ED PCFDDP+C R G GIGCNA GDFYCRFCGF + + DCP+
Sbjct:  260 DYVECSSRCLESEDFPCFDDPSCPRDGNGIGCNATGDFYCRFCGFLEEFVDCPD 313
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BLAST of mRNA_H-elongata_contig108501.691.1 vs. uniprot
Match: A0A7S4RJJ8_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4RJJ8_9DINO)

HSP 1 Score: 49.3 bits (116), Expect = 6.540e-5
Identity = 24/44 (54.55%), Postives = 28/44 (63.64%), Query Frame = -1 
Query:  181 DGPCFDDPTCRS-----GGIGCNAGGDFY-CRFCGFDLYQDCPN 294
            D PC+ DP C        G+GCNAGG    CRFCGFDLY +CP+
Sbjct:  106 DEPCYLDPQCSELPPGLEGLGCNAGGVGQDCRFCGFDLYPECPS 149
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108501.691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LSN4_ECTSI4.150e-1258.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJT3_9PHAE7.210e-1262.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4RJJ8_9DINO6.540e-554.55Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig108501contigH-elongata_contig108501:98..431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size334
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929613.4824605-CDS-H-elongata_contig108501:97..4301622929613.4824605-CDS-H-elongata_contig108501:97..430Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108501 98..430 +
1691679091.479159-CDS-H-elongata_contig108501:97..4301691679091.479159-CDS-H-elongata_contig108501:97..430Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108501 98..430 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig108501.691.1prot_H-elongata_contig108501.691.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig108501 98..430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig108501.691.1

>prot_H-elongata_contig108501.691.1 ID=prot_H-elongata_contig108501.691.1|Name=mRNA_H-elongata_contig108501.691.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
RRGTGHRRGKSRRRSNGHRRSMGRHRGGKSWNDKGRRGWCWNQGGRCWQC
YDCRRRRRGSVRAVLIKIEAAKTAVEVATGVASDTSTATSGVVEARAVLV
LEAPPVAYLAV
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mRNA from alignment at H-elongata_contig108501:98..431+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig108501.691.1 ID=mRNA_H-elongata_contig108501.691.1|Name=mRNA_H-elongata_contig108501.691.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=334bp|location=Sequence derived from alignment at H-elongata_contig108501:98..431+ (Himanthalia elongata Himel1 dioecious)
CGGCGGGGCACCGGTCATCGGCGGGGCAAGAGTCGTCGTCGGAGCAACGG
TCATCGTCGGAGCATGGGTCGCCACCGGGGAGGGAAGAGTTGGAACGACA
AAGGCCGAAGAGGTTGGTGTTGGAACCAGGGTGGTAGGTGTTGGCAATGC
TATGATTGTCGTCGGCGAAGGCGTGGGTCCGTTCGGGCAGTCTTGATAAA
GATCGAAGCCGCAAAAACGGCAGTAGAAGTCGCCACCGGCGTTGCATCCG
ATACCTCCACTGCGACAAGTGGGGTCGTCGAAGCACGGGCCGTCCTCGTC
TTGGAGGCACCACCCGTCGCATACCTTGCGGTCT
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Coding sequence (CDS) from alignment at H-elongata_contig108501:98..431+

>mRNA_H-elongata_contig108501.691.1 ID=mRNA_H-elongata_contig108501.691.1|Name=mRNA_H-elongata_contig108501.691.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig108501:98..431+ (Himanthalia elongata Himel1 dioecious)
CGGCGGGGCACCGGTCATCGGCGGGGCAAGAGTCGTCGTCGGAGCAACGG
TCATCGTCGGAGCATGGGTCGCCACCGGGGAGGGAAGAGTTGGAACGACA
AAGGCCGAAGAGGTTGGTGTTGGAACCAGGGTGGTAGGTGTTGGCAATGC
TATGATTGTCGTCGGCGAAGGCGTGGGTCCGTTCGGGCAGTCTTGATAAA
GATCGAAGCCGCAAAAACGGCAGTAGAAGTCGCCACCGGCGTTGCATCCG
ATACCTCCACTGCGACAAGTGGGGTCGTCGAAGCACGGGCCGTCCTCGTC
TTGGAGGCACCACCCGTCGCATACCTTGCGGTCCGGCGGGGCACCGGTCA
TCGGCGGGGCAAGAGTCGTCGTCGGAGCAACGGTCATCGTCGGAGCATGG
GTCGCCACCGGGGAGGGAAGAGTTGGAACGACAAAGGCCGAAGAGGTTGG
TGTTGGAACCAGGGTGGTAGGTGTTGGCAATGCTATGATTGTCGTCGGCG
AAGGCGTGGGTCCGTTCGGGCAGTCTTGATAAAGATCGAAGCCGCAAAAA
CGGCAGTAGAAGTCGCCACCGGCGTTGCATCCGATACCTCCACTGCGACA
AGTGGGGTCGTCGAAGCACGGGCCGTCCTCGTCTTGGAGGCACCACCCGT
CGCATACCTTGCGGTC
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