mRNA_H-elongata_contig108480.690.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig108480.690.1
Unique NamemRNA_H-elongata_contig108480.690.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig108480.690.1 vs. uniprot
Match: A0A835YH28_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH28_9STRA)

HSP 1 Score: 144 bits (364), Expect = 1.720e-39
Identity = 76/132 (57.58%), Postives = 87/132 (65.91%), Query Frame = 1
Query:    1 FLTMQTKEQGLTNVRVITGDINTFDLEEKDMGAYDRVMSIEMFEHMKNYQKLIAKISHWLAPGGKLFGMQIFSRRRPPPTDGVVRLVLLRAVHIFVHKDHPYHFLPE-DGWMAEYFFTGGTMASDDLLLYFQ 393
            F+     E+GL NV VITG+INTFDL +   G +DRV SIEMFEHMKNY+ L+AK++ WL  GGKLF                        VHIFVHKDHPYHF  E DG+MA+YFFTGGTM SDDLLLYFQ
Sbjct:  168 FIDAACAERGLANVTVITGNINTFDLPDDVKGTFDRVCSIEMFEHMKNYKLLMAKVAGWLRSGGKLF------------------------VHIFVHKDHPYHFRAETDGFMAQYFFTGGTMPSDDLLLYFQ 275          
BLAST of mRNA_H-elongata_contig108480.690.1 vs. uniprot
Match: D8LTB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTB4_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 1.580e-36
Identity = 71/127 (55.91%), Postives = 82/127 (64.57%), Query Frame = 1
Query:   13 QTKEQGLTNVRVITGDINTFDLEEKDMGAYDRVMSIEMFEHMKNYQKLIAKISHWLAPGGKLFGMQIFSRRRPPPTDGVVRLVLLRAVHIFVHKDHPYHFLPEDGWMAEYFFTGGTMASDDLLLYFQ 393
            Q +E+G  NVRVITGDIN FDL E+D G++DRVMSIEMFEHMKNY+ LIAKIS WL+PGGKLF                        VHI  HKDHPYHF  E+G  A+YFF G  M  + LL +FQ
Sbjct:  172 QCRERGFGNVRVITGDINEFDLGEEDKGSFDRVMSIEMFEHMKNYKLLIAKISGWLSPGGKLF------------------------VHILKHKDHPYHFFQEEGGRAQYFFWGERMPWEALLFHFQ 274          
BLAST of mRNA_H-elongata_contig108480.690.1 vs. uniprot
Match: A0A7S3XXB9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXB9_HETAK)

HSP 1 Score: 132 bits (331), Expect = 1.240e-34
Identity = 67/127 (52.76%), Postives = 83/127 (65.35%), Query Frame = 1
Query:   13 QTKEQGLTNVRVITGDINTFDLEEKDMGAYDRVMSIEMFEHMKNYQKLIAKISHWLAPGGKLFGMQIFSRRRPPPTDGVVRLVLLRAVHIFVHKDHPYHFLPEDGWMAEYFFTGGTMASDDLLLYFQ 393
            Q +++GLTN+ V T DIN F+   K+   YDRV+SIEMFEHMKNYQ+L+ +++ W+APGGKLF                        VHIF HK HPYHF  + GWMA+ FFTGGTM SDDLL+YFQ
Sbjct:  173 QCQKRGLTNITVYTSDINVFEPPHKN--HYDRVISIEMFEHMKNYQELLKRVASWMAPGGKLF------------------------VHIFTHKTHPYHF--DKGWMAQTFFTGGTMPSDDLLMYFQ 271          
BLAST of mRNA_H-elongata_contig108480.690.1 vs. uniprot
Match: A0A7S2FL41_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FL41_9STRA)

HSP 1 Score: 124 bits (312), Expect = 2.040e-33
Identity = 67/125 (53.60%), Postives = 76/125 (60.80%), Query Frame = 1
Query:   19 KEQGLTNVRVITGDINTFDLEEKDMGAYDRVMSIEMFEHMKNYQKLIAKISHWLAPGGKLFGMQIFSRRRPPPTDGVVRLVLLRAVHIFVHKDHPYHFLPEDGWMAEYFFTGGTMASDDLLLYFQ 393
            K +GLTNV V TGDIN + + E+ +G +DR +SIEMFEHMKNY KL+ K+S WL P GKLF                        VHIF H   PYHF  E GWMAE FFTGGTM SD LLL FQ
Sbjct:   12 KARGLTNVTVYTGDINEWIMPEEHVGTFDRCISIEMFEHMKNYDKLLGKVSDWLKPQGKLF------------------------VHIFTHTVCPYHF--EKGWMAENFFTGGTMPSDSLLLNFQ 110          
BLAST of mRNA_H-elongata_contig108480.690.1 vs. uniprot
Match: A0A286UG25_9AGAM (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Pyrrhoderma noxium TaxID=2282107 RepID=A0A286UG25_9AGAM)

HSP 1 Score: 129 bits (323), Expect = 2.500e-33
Identity = 64/125 (51.20%), Postives = 79/125 (63.20%), Query Frame = 1
Query:   19 KEQGLTNVRVITGDINTFDLEEKDMGAYDRVMSIEMFEHMKNYQKLIAKISHWLAPGGKLFGMQIFSRRRPPPTDGVVRLVLLRAVHIFVHKDHPYHFLPEDGWMAEYFFTGGTMASDDLLLYFQ 393
            KE+G  NV +IT D+N+FD    D   +DR++SIEMFEHMKNY  L+ K++ WL P           RR     D  +    L  VHIF HKD PYHF+ +DGWMA+ FF+GGTM S DLLLYFQ
Sbjct:  171 KEKGFENVEIITADVNSFDFS--DGRTFDRILSIEMFEHMKNYDALLKKVASWLRP-----------RRIQNNEDKAIERESLLFVHIFCHKDTPYHFVEDDGWMAQTFFSGGTMPSHDLLLYFQ 282          
BLAST of mRNA_H-elongata_contig108480.690.1 vs. uniprot
Match: UPI0004408EDA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Fomitiporia mediterranea (strain MF3/22) TaxID=694068 RepID=UPI0004408EDA)

HSP 1 Score: 128 bits (322), Expect = 3.830e-33
Identity = 65/125 (52.00%), Postives = 83/125 (66.40%), Query Frame = 1
Query:   19 KEQGLTNVRVITGDINTFDLEEKDMGAYDRVMSIEMFEHMKNYQKLIAKISHWLAPGGKLFGMQIFSRRRPPPTDGVVRLVLLRAVHIFVHKDHPYHFLPEDGWMAEYFFTGGTMASDDLLLYFQ 393
            KE+GL NV +IT D+NTFD    D   +DR++SIEMFEHMKNY++L+ KIS W+ P       ++ S  +   T+G      L  VH F HK +PYHF  +DGWMA+ FF+GGTM S DLLLYFQ
Sbjct:  168 KEKGLENVEIITADVNTFDFT--DGRTFDRILSIEMFEHMKNYKELLQKISRWMRPKAP---SKLDSDIKDNNTNGAEDDESLLFVHYFCHKTNPYHFEEDDGWMAQTFFSGGTMMSSDLLLYFQ 287          
BLAST of mRNA_H-elongata_contig108480.690.1 vs. uniprot
Match: A0A8H5F3F5_9AGAR (Uncharacterized protein n=1 Tax=Psilocybe cf. subviscida TaxID=2480587 RepID=A0A8H5F3F5_9AGAR)

HSP 1 Score: 126 bits (316), Expect = 2.280e-32
Identity = 62/126 (49.21%), Postives = 83/126 (65.87%), Query Frame = 1
Query:   16 TKEQGLTNVRVITGDINTFDLEEKDMGAYDRVMSIEMFEHMKNYQKLIAKISHWLAPGGKLFGMQIFSRRRPPPTDGVVRLVLLRAVHIFVHKDHPYHFLPEDGWMAEYFFTGGTMASDDLLLYFQ 393
            TK +GLTN++++T D+NTFD +++    +DR++SIEMFEHMKNYQ L+ K+S WL P           R    P+D    L     +HIF H+  PYHF+ +DGWMA+ FF+GGTM S DL LYFQ
Sbjct:  166 TKTRGLTNLKIVTADVNTFDFDKET--RFDRILSIEMFEHMKNYQILLKKVSTWLRP-----------RAEKAPSDEESLLF----IHIFCHRTTPYHFVEDDGWMAKNFFSGGTMPSHDLFLYFQ 274          
BLAST of mRNA_H-elongata_contig108480.690.1 vs. uniprot
Match: A0A165N092_9APHY (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Daedalea quercina L-15889 TaxID=1314783 RepID=A0A165N092_9APHY)

HSP 1 Score: 125 bits (315), Expect = 2.820e-32
Identity = 63/125 (50.40%), Postives = 77/125 (61.60%), Query Frame = 1
Query:   19 KEQGLTNVRVITGDINTFDLEEKDMGAYDRVMSIEMFEHMKNYQKLIAKISHWLAPGGKLFGMQIFSRRRPPPTDGVVRLVLLRAVHIFVHKDHPYHFLPEDGWMAEYFFTGGTMASDDLLLYFQ 393
            + QGL N+ +IT DIN F  E + +G +DRV+SIEMFEHMKNY+ L+ K+S WL P G LF                        VHIF H+  PYHF  +DGWMA +FF+GGTM S DLLLYFQ
Sbjct:  169 RSQGLHNIEIITADINVF--EFRQVGQFDRVLSIEMFEHMKNYKALLRKVSSWLRPDGLLF------------------------VHIFCHRTTPYHFASDDGWMATHFFSGGTMPSHDLLLYFQ 267          
BLAST of mRNA_H-elongata_contig108480.690.1 vs. uniprot
Match: A0A7S2BPY3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BPY3_9STRA)

HSP 1 Score: 124 bits (312), Expect = 4.600e-32
Identity = 67/125 (53.60%), Postives = 76/125 (60.80%), Query Frame = 1
Query:   19 KEQGLTNVRVITGDINTFDLEEKDMGAYDRVMSIEMFEHMKNYQKLIAKISHWLAPGGKLFGMQIFSRRRPPPTDGVVRLVLLRAVHIFVHKDHPYHFLPEDGWMAEYFFTGGTMASDDLLLYFQ 393
            K +GLTNV V TGDIN + + E+ +G +DR +SIEMFEHMKNY KL+ K+S WL P GKLF                        VHIF H   PYHF  E GWMAE FFTGGTM SD LLL FQ
Sbjct:  144 KARGLTNVTVYTGDINEWIMPEEHVGTFDRCISIEMFEHMKNYDKLLGKVSDWLKPQGKLF------------------------VHIFTHTVCPYHF--EKGWMAENFFTGGTMPSDSLLLNFQ 242          
BLAST of mRNA_H-elongata_contig108480.690.1 vs. uniprot
Match: K5W5F7_PHACS (Uncharacterized protein n=1 Tax=Phanerochaete carnosa (strain HHB-10118-sp) TaxID=650164 RepID=K5W5F7_PHACS)

HSP 1 Score: 124 bits (311), Expect = 4.780e-32
Identity = 65/125 (52.00%), Postives = 79/125 (63.20%), Query Frame = 1
Query:   19 KEQGLTNVRVITGDINTFDLEEKDMGAYDRVMSIEMFEHMKNYQKLIAKISHWLAPGGKLFGMQIFSRRRPPPTDGVVRLVLLRAVHIFVHKDHPYHFLPEDGWMAEYFFTGGTMASDDLLLYFQ 393
            K +GLTNV+VIT D+NTF+ +      +DRV+SIEMFEHMKNY+ L++K+S WL P           +  P   D       L  VHIF HK  PYHF   DGWMA+ FF+GGTM S DLLLYFQ
Sbjct:  118 KSRGLTNVQVITADVNTFEFDSS--ARFDRVLSIEMFEHMKNYKMLMSKVSSWLRP-----------KTEPSGEDS------LFFVHIFCHKMTPYHFEESDGWMAQNFFSGGTMPSHDLLLYFQ 223          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108480.690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YH28_9STRA1.720e-3957.58S-adenosyl-L-methionine-dependent methyltransferas... [more]
D8LTB4_ECTSI1.580e-3655.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3XXB9_HETAK1.240e-3452.76Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2FL41_9STRA2.040e-3353.60Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A286UG25_9AGAM2.500e-3351.20S-adenosyl-L-methionine-dependent methyltransferas... [more]
UPI0004408EDA3.830e-3352.00S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A8H5F3F5_9AGAR2.280e-3249.21Uncharacterized protein n=1 Tax=Psilocybe cf. subv... [more]
A0A165N092_9APHY2.820e-3250.40S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A7S2BPY3_9STRA4.600e-3253.60Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
K5W5F7_PHACS4.780e-3252.00Uncharacterized protein n=1 Tax=Phanerochaete carn... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig108480contigH-elongata_contig108480:1067..1993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.7
Seed ortholog evalue2e-30
Seed eggNOG ortholog2880.D8LTB4
EggNOG free text desc.Mycolic acid cyclopropane synthetase
EggNOG OGs2QQW3@2759,COG2230@1
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size399
Cds size390
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig108480.690.1prot_H-elongata_contig108480.690.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig108480 1067..1984 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929613.4218347-CDS-H-elongata_contig108480:1066..12631622929613.4218347-CDS-H-elongata_contig108480:1066..1263Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108480 1067..1263 -
1691679091.4479485-CDS-H-elongata_contig108480:1066..12631691679091.4479485-CDS-H-elongata_contig108480:1066..1263Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108480 1067..1263 -
1622929613.4369073-CDS-H-elongata_contig108480:1791..19841622929613.4369073-CDS-H-elongata_contig108480:1791..1984Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108480 1792..1984 -
1691679091.459925-CDS-H-elongata_contig108480:1791..19841691679091.459925-CDS-H-elongata_contig108480:1791..1984Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108480 1792..1984 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929613.449926-UTR-H-elongata_contig108480:1984..19931622929613.449926-UTR-H-elongata_contig108480:1984..1993Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig108480 1985..1993 -
1691679091.4695427-UTR-H-elongata_contig108480:1984..19931691679091.4695427-UTR-H-elongata_contig108480:1984..1993Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig108480 1985..1993 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig108480.690.1

>prot_H-elongata_contig108480.690.1 ID=prot_H-elongata_contig108480.690.1|Name=mRNA_H-elongata_contig108480.690.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp
MQTKEQGLTNVRVITGDINTFDLEEKDMGAYDRVMSIEMFEHMKNYQKLI
AKISHWLAPGGKLFGMQIFSRRRPPPTDGVVRLVLLRAVHIFVHKDHPYH
FLPEDGWMAEYFFTGGTMASDDLLLYFQV*
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mRNA from alignment at H-elongata_contig108480:1067..1993-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig108480.690.1 ID=mRNA_H-elongata_contig108480.690.1|Name=mRNA_H-elongata_contig108480.690.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=927bp|location=Sequence derived from alignment at H-elongata_contig108480:1067..1993- (Himanthalia elongata Himel1 dioecious)
TTTTTGACGATGCAAACGAAGGAGCAAGGGCTGACCAACGTCCGAGTGAT CACCGGCGATATCAACACCTTTGACCTGGAAGAGAAGGACATGGGAGCGT ATGACCGCGTGATGAGCATCGAGATGTTCGAGCATATGAAGAACTACCAG AAGCTCATCGCGAAGATCAGCCACTGGCTTGCCCCCGGGGGCAAGCTTTT CGGTGCGGGCCTTTCTGTCTCTGTAAATCTCTCTCTAATAGATATATACA TAGATGTATATCTTGCTGTTTTTTCTCTCATTTTTTACGGAAAGTCGGAG AATATAGTTCTCCGTTTCAGCATTGTTGGCTTTTGGAATTCGCGGCGTTC GTGTGGCGCGAAGACGCGCGCGACCGGCGGACCGAATATGTGCGTTCGTA AAGCGCAGCCCACGCCCGGGGCTGCATGAGCTCCAAATCTCGAAAACGCG CAGTAAATCGTAGCTGCAGACGATGCAGTTTGATCATATTATTTGTTCGT GTCAAAAATACACGGGAACAGCGAGGGGGACGCGAGGAAGGAGGGGGCGC CGAAAATATTTAAACCTCCTGAAGAGAAAGAAAGGAAATAAAACGTGACA GAAATTTATTGGCCGTGCGGGAGTCCACTTTATGTTCGCTCTTAATGTAT CGCTTTCCCAGGCCCCCTTGCAACGTTCCGTGGGATCGAGGCCACAGGCC ATAACCCCTCCCCCCCCACTAACAGCTAAGGCATGCAAATATTTAGCCGC CGCCGCCCACCCCCCACTGATGGTGTTGTGCGATTGGTGTTGTTGCGTGC AGTTCACATCTTCGTGCACAAAGATCACCCGTACCATTTCCTGCCGGAGG ACGGTTGGATGGCGGAATACTTCTTCACGGGGGGCACGATGGCTTCAGAC GATCTCCTCCTGTACTTCCAGGTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig108480:1067..1993-

>mRNA_H-elongata_contig108480.690.1 ID=mRNA_H-elongata_contig108480.690.1|Name=mRNA_H-elongata_contig108480.690.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at H-elongata_contig108480:1067..1993- (Himanthalia elongata Himel1 dioecious)
ATGCAAACGAAGGAGCAAGGGCTGACCAACGTCCGAGTGATCACCGGCGA
TATCAACACCTTTGACCTGGAAGAGAAGGACATGGGAGCGTATGACCGCG
TGATGAGCATCGAGATGTTCGAGCATATGAAGAACTACCAGAAGCTCATC
GCGAAGATCAGCCACTGGCTTGCCCCCGGGGGCAAGCTTTTCGATGCAAA
CGAAGGAGCAAGGGCTGACCAACGTCCGAGTGATCACCGGCGATATCAAC
ACCTTTGACCTGGAAGAGAAGGACATGGGAGCGTATGACCGCGTGATGAG
CATCGAGATGTTCGAGCATATGAAGAACTACCAGAAGCTCATCGCGAAGA
TCAGCCACTGGCTTGCCCCCGGGGGCAAGCTTTTCGGCATGCAAATATTT
AGCCGCCGCCGCCCACCCCCCACTGATGGTGTTGTGCGATTGGTGTTGTT
GCGTGCAGTTCACATCTTCGTGCACAAAGATCACCCGTACCATTTCCTGC
CGGAGGACGGTTGGATGGCGGAATACTTCTTCACGGGGGGCACGATGGCT
TCAGACGATCTCCTCCTGTACTTCCAGGTGTGAGCATGCAAATATTTAGC
CGCCGCCGCCCACCCCCCACTGATGGTGTTGTGCGATTGGTGTTGTTGCG
TGCAGTTCACATCTTCGTGCACAAAGATCACCCGTACCATTTCCTGCCGG
AGGACGGTTGGATGGCGGAATACTTCTTCACGGGGGGCACGATGGCTTCA
GACGATCTCCTCCTGTACTTCCAGGTGTGA
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