mRNA_H-elongata_contig10848.689.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10848.689.1
Unique NamemRNA_H-elongata_contig10848.689.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10848.689.1 vs. uniprot
Match: A0A6H5JRE7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE7_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 2.290e-60
Identity = 127/388 (32.73%), Postives = 212/388 (54.64%), Query Frame = 1
Query:  103 IELPEGYRDSKKQVDLLKEAMYGLVNAGLFWSKRFRTELKAKGFERFQADPCVLRRVLREKVVXXXXXXXXXLLVASATKRDEEQVLKDLHSCFPIKDLGEVSFYLGYYISRDRDAGKLRLNHHQYLQTLAEHFEITKTSAIPPAARGKPLSKADGPQTSADA*ETRWITYREALGTLIWVATMTRPYISFALNQLAKFNDNPGPIRCKAARKAIQYMSRTKSLGVTCRSTPGESEKLSAWVDADHGTFPDTH*LVSGGEVMMGNGTISWLSRVQKVTATASLE**NVALVETVNELRFLQQVKEF-RMSPIDIRIKILEDNEGAIKMSKNRVRSPRTRHMDVKYHIINDAIDEGIIQIKYVPFEEHHVNIITKALDVKTFEKHLRFL 1263
            ++LP G      ++  L +++YGL  A     KR  ++L   GFE+  +DPCVLR ++ ++V+         +L A  TKR  E +++ L    P K+LGEV F+LG  ISRDR+AG + ++   Y++ + E F I +TS+IP        S A+  ++  +  E   + +RE +G L+W+A  TRP  S A+  +A+ +  P     KAA+K + Y+  T  L +  +           +VDAD  +       VSG  V++    +SW S  QK  + ++ E   +A+ + V E  F+  + +F R S    +I + EDNEGAI +++N + S R++H+DV++H + +  +EG+I++ +VP +E H +I+TKAL    FE H  F+
Sbjct:    1 MKLPPGCDSMSGKIVRLNKSLYGLKQASRTSYKRLVSDLLWIGFEQSLSDPCVLRFMMGDEVMGIFAIHVDDILYAG-TKRLAEVIVEALGDSLPTKNLGEVRFFLGCEISRDREAGTIEISQESYIRNVLERFNICRTSSIP-------ASPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVVGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEAFFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLFEFHRDFV 380          
BLAST of mRNA_H-elongata_contig10848.689.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 3.900e-60
Identity = 142/422 (33.65%), Postives = 225/422 (53.32%), Query Frame = 1
Query:    1 IRMVLGIIAILGWEVRQLNVDMVYLEANVEEEIYIELPEGYRDSKKQVDLLKEAMYGLVNAGLFWSKRFRTELKAKGFERFQADPCVLRRVLREKVVXXXXXXXXXLLVASATKRDEEQVLKDLHSCFPIKDLGEVSFYLGYYISRDRDAGKLRLNHHQYLQTLAEHFEITKTSAIPPAARGKPLSKADGPQTSADA*ETRWITYREALGTLIWVATMTRPYISFALNQLAKFNDNPGPIRCKAARKAIQYMSRTKSLGVTCRSTPGESEKLSAWVDADHGTFPDTH*LVSGGEVMMGNGTISWLSRVQKVTATASLE**NVALVETVNELRFLQQVKEFRMSPID-IRIKILEDNEGAIKMSKNRVRSPRTRHMDVKYHIINDAIDEGIIQIKYVPFEEHHVNIITKALDVKTFEKHLRFL 1263
            I+++L +    G  +   +V   Y  A ++EE++++LP G  D   ++   + A+YGL  +G  W       L   GFE+ +ADPCV R+++ E VV         +LVA + + D E++L  L+  FP K+LGE  ++ G  I RD +AG LR++   Y+ ++ E F++  TS IP A  G  L    GP+   D     W   REA+G+++WV+T +RP +SFA+  +A+    P      A +K + Y+  T+ LG+T +   G    L+ +VDA +    D    VSG    +G   +S  S+ Q + + +S E   +A  E V E  F++ V  F         IK+LEDN+GAI + +N + S RT+H+DV+YH I      G I +K+VP  E H +++TKAL   + + H R L
Sbjct:  831 IKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIP-ATPGADL----GPKRE-DEEGGEW-PVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQR--GSGLGLAVYVDASYADTEDRR-SVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKL 1241          
BLAST of mRNA_H-elongata_contig10848.689.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 4.530e-60
Identity = 142/422 (33.65%), Postives = 225/422 (53.32%), Query Frame = 1
Query:    1 IRMVLGIIAILGWEVRQLNVDMVYLEANVEEEIYIELPEGYRDSKKQVDLLKEAMYGLVNAGLFWSKRFRTELKAKGFERFQADPCVLRRVLREKVVXXXXXXXXXLLVASATKRDEEQVLKDLHSCFPIKDLGEVSFYLGYYISRDRDAGKLRLNHHQYLQTLAEHFEITKTSAIPPAARGKPLSKADGPQTSADA*ETRWITYREALGTLIWVATMTRPYISFALNQLAKFNDNPGPIRCKAARKAIQYMSRTKSLGVTCRSTPGESEKLSAWVDADHGTFPDTH*LVSGGEVMMGNGTISWLSRVQKVTATASLE**NVALVETVNELRFLQQVKEFRMSPID-IRIKILEDNEGAIKMSKNRVRSPRTRHMDVKYHIINDAIDEGIIQIKYVPFEEHHVNIITKALDVKTFEKHLRFL 1263
            I+++L +    G  +   +V   Y  A ++EE++++LP G  D   ++   + A+YGL  +G  W       L   GFE+ +ADPCV R+++ E VV         +LVA + + D E++L  L+  FP K+LGE  ++ G  I RD +AG LR++   Y+ ++ E F++  TS IP A  G  L    GP+   D     W   REA+G+++WV+T +RP +SFA+  +A+    P      A +K + Y+  T+ LG+T +   G    L+ +VDA +    D    VSG    +G   +S  S+ Q + + +S E   +A  E V E  F++ V  F         IK+LEDN+GAI + +N + S RT+H+DV+YH I      G I +K+VP  E H +++TKAL   + + H R L
Sbjct: 1210 IKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIP-ATPGADL----GPKRE-DEEGGEW-PVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQR--GSGLGLAVYVDASYADTEDRR-SVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKL 1620          
BLAST of mRNA_H-elongata_contig10848.689.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 4.640e-60
Identity = 142/422 (33.65%), Postives = 225/422 (53.32%), Query Frame = 1
Query:    1 IRMVLGIIAILGWEVRQLNVDMVYLEANVEEEIYIELPEGYRDSKKQVDLLKEAMYGLVNAGLFWSKRFRTELKAKGFERFQADPCVLRRVLREKVVXXXXXXXXXLLVASATKRDEEQVLKDLHSCFPIKDLGEVSFYLGYYISRDRDAGKLRLNHHQYLQTLAEHFEITKTSAIPPAARGKPLSKADGPQTSADA*ETRWITYREALGTLIWVATMTRPYISFALNQLAKFNDNPGPIRCKAARKAIQYMSRTKSLGVTCRSTPGESEKLSAWVDADHGTFPDTH*LVSGGEVMMGNGTISWLSRVQKVTATASLE**NVALVETVNELRFLQQVKEFRMSPID-IRIKILEDNEGAIKMSKNRVRSPRTRHMDVKYHIINDAIDEGIIQIKYVPFEEHHVNIITKALDVKTFEKHLRFL 1263
            I+++L +    G  +   +V   Y  A ++EE++++LP G  D   ++   + A+YGL  +G  W       L   GFE+ +ADPCV R+++ E VV         +LVA + + D E++L  L+  FP K+LGE  ++ G  I RD +AG LR++   Y+ ++ E F++  TS IP A  G  L    GP+   D     W   REA+G+++WV+T +RP +SFA+  +A+    P      A +K + Y+  T+ LG+T +   G    L+ +VDA +    D    VSG    +G   +S  S+ Q + + +S E   +A  E V E  F++ V  F         IK+LEDN+GAI + +N + S RT+H+DV+YH I      G I +K+VP  E H +++TKAL   + + H R L
Sbjct: 1373 IKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIP-ATPGADL----GPKRE-DEEGGEW-PVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQR--GSGLGLAVYVDASYADTEDRR-SVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKL 1783          
BLAST of mRNA_H-elongata_contig10848.689.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 9.720e-59
Identity = 138/410 (33.66%), Postives = 220/410 (53.66%), Query Frame = 1
Query:    1 IRMVLGIIAILGWEVRQLNVDMVYLEANVEEEIYIELPEGYRDSKKQVDLLKEAMYGLVNAGLFWSKRFRTELKAKGFERFQADPCVLRRVLREKVVXXXXXXXXXLLVASATKRDEEQVLKDLHSCFPIKDLGEVSFYLGYYISRDRDAGKLRLNHHQYLQTLAEHFEITKTSAIPPAARGKPLSKADGPQTSADA*ETRWITYREALGTLIWVATMTRPYISFALNQLAKFNDNPGPIRCKAARKAIQYMSRTKSLGVTCRSTPGESEKLSAWVDADHGTFPDTH*LVSGGEVMMGNGTISWLSRVQKVTATASLE**NVALVETVNELRFLQQVKEFRMSPID-IRIKILEDNEGAIKMSKNRVRSPRTRHMDVKYHIINDAIDEGIIQIKYVPFEEHHVNIITKAL 1227
            I+++L +    G  +   +V   Y  A ++EE++++LP G  D   ++   + A+YGL  +G  W       L   GFE+ +ADPCV R+++ + VV         +LVA + + D E++L  L+  FP K+LGE  ++ G  I RD +AG LR++   Y+ ++ E F++  TS IP A  G  L    GP+   D     W   REA+G+++WV+T +RP +SFA+  +A+    P      A +K + Y+  T+ LG+T +   G    L+ +VDA +    D    VSG    +G   +S  S+ Q + + +S E   +A  E V E  F++ V  F         IK+LEDN+GAI + +N + S RT+H+DV+YH I      G I +K+VP  E H +++TKAL
Sbjct: 1230 IKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIP-ATPGADL----GPKRE-DEEGGEW-PVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQR--GSGLGLAVYVDASYADTEDRR-SVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1628          
BLAST of mRNA_H-elongata_contig10848.689.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 1.130e-57
Identity = 137/410 (33.41%), Postives = 223/410 (54.39%), Query Frame = 1
Query:   37 WEVRQLNVDMVYLEANVEEEIYIELPEGYRDSKKQVDLLKEAMYGLVNAGLFWSKRFRTELKAKGFERFQADPCVLRRVLREKVVXXXXXXXXXLLVASATKRDEEQVLKDLHSCFPIKDLGEVSFYLGYYISRDRDAGKLRLNHHQYLQTLAEHFEITKTSAIPPAARGKPLSKADGPQTSADA*ETRWITYREALGTLIWVATMTRPYISFALNQLAKFNDNPGPIRCKAARKAIQYMSRTKSLGVTCRSTPGESEKLSAWVDADHGTFPDTH*LVSGGEVMMGNGTISWLSRVQKVTATASLE**NVALVETVNELRFLQQVKEFRMSPID-IRIKILEDNEGAIKMSKNRVRSPRTRHMDVKYHIINDAIDEGIIQIKYVPFEEHHVNIITKALDVKTFEKHLRFL 1263
            W+V+Q      +  A ++E++++ LP G  +   +V   + A+YGL  +G  W       L   GFE+ +ADPCV R+ +++ VVXXXXXXXX  ++ + +  D +++L  L+  FP KDLGE  ++ G  + RD +AG LR++   Y+ ++   F++  TS+IP A+ G  +      ++  +     W   REA+G+++WV+T +RP ISFA+  +A+    P     KA  K + Y+  T+ LG+T     G    L+ +VDA +    D    VSG    +G   IS  S+ Q + + +S E   +A  E V E  F++ V  F         I++LEDN+GA+ + +N + S R++H+DV+YH I      G I IK+V   E H +++TKAL   + + H R L
Sbjct:  111 WDVKQ-----AFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRK-MKDDVVXXXXXXXXDXILVAGSDDDCKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIP-ASPGVDIGPKRDDESGGE-----W-PVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYER--GSGLGLAVYVDASYADAEDRR-SVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKL 504          
BLAST of mRNA_H-elongata_contig10848.689.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 3.730e-57
Identity = 124/407 (30.47%), Postives = 210/407 (51.60%), Query Frame = 1
Query:   46 RQLNVDMVYLEANVEEEIYIELPEGYRDSKKQVDLLKEAMYGLVNAGLFWSKRFRTELKAKGFERFQADPCVLRRVLREKVVXXXXXXXXXLLVASATKRDEEQVLKDLHSCFPIKDLGEVSFYLGYYISRDRDAGKLRLNHHQYLQTLAEHFEITKTSAIPPAARGKPLSKADGPQTSADA*ETRWITYREALGTLIWVATMTRPYISFALNQLAKFNDNPGPIRCKAARKAIQYMSRTKSLGVTCRSTPGESEKLSAWVDADHGTFPDTH*LVSGGEVMMGNGTISWLSRVQKVTATASLE**NVALVETVNELRFLQQVKEFRMSPIDIR-IKILEDNEGAIKMSKNRVRSPRTRHMDVKYHIINDAIDEGIIQIKYVPFEEHHVNIITKALDVKTFEKHLRFL 1263
            R  ++   +++++++E++++ LPEG       +  L +++YGL  A   W       L   GF +  AD CV R +   +VV         +      +R + Q  +DL++  P+K+LG++ +Y G +  RD DAG L+++   Y + L   F +     IP    G  LS+ D      D     W  +RE +G+L+W+AT TRP I+ A+  +A++  +P  I  +A    + Y+ RT  LG+T R        +  +VDAD+ +       VSGG VM G G ISW SR QK    ++ E   V+L + + E+ FL+QV  F +    +  I + EDN+GAI++++N + +  ++H+DV++H I + +    I I +V     H + +TKAL    FE H  ++
Sbjct:   36 RHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCD-QFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPV-GLKLSEFD-----QDEEVVSW-PFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYV 434          
BLAST of mRNA_H-elongata_contig10848.689.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 6.840e-56
Identity = 138/424 (32.55%), Postives = 226/424 (53.30%), Query Frame = 1
Query:    1 IRMVLGIIAILGWEVRQLNVDMVYLEANVEEEIYIELPEGYRDSKKQVDLLKEAMYGLVNAGLFWSKRFRTELKAKGFERFQADPCVLRRVLREKVVXXXXXXXXXLLVASATKRDEEQVLKDLHSCFPIKDLGEVSFYLGYYISRDRDAGKLRLNHHQYLQTLAEHFEITKTSAIPPAARGKPLSKADGPQTSADA*ETRWITYREALGTLIWVATMTRPYISFALNQLAKFNDNPGPIRCKAARKAIQYMSRTKSLGVTCRSTPGESEKLSAWVDADHGTFPDTH*LVSGGEVMMGNGTISWLSRVQKVTATASLE**NVALVETVNELRFLQQVKEFRMSPIDIR---IKILEDNEGAIKMSKNRVRSPRTRHMDVKYHIINDAIDEGIIQIKYVPFEEHHVNIITKALDVKTFEKHLRFL 1263
            I+++L +    G  +   +V   Y  A ++EE++++LP G  D   ++   + A+YGL  +G  W       L   GFE+ +ADPCV R+++ E VV         +LVA + + D E++L  L+  FP K+LGE  ++ G  I RD DAG LR++   Y+ ++ E F++  TS IP A  G  L    GP+   D     W   REA+G+++WV+T +RP +SFA+  +A+    P      A +K + Y+  T+ LG+T +   G    L+ +VDA +    D    VS     +G   +S  S+ + + + +S E   +A  E V E  F++ V  F ++P + R   I++LEDN+GAI + +N + S   +H+DV++H I      G   +K+VP  E H +I+T+AL   + + H R L
Sbjct:  422 IKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIP-ATPGADL----GPKREDDK-GGEW-PVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQR--GSGLGLAVYVDARYADTEDRR-SVSRLATTVGGTVVSHGSKARSIVSLSSTEAEYIAAGEGVKEALFVRAVLSF-VAP-ETRGSSIQVLEDNQGAIALVQNPLSSGGMKHIDVRFHFIRGLFRSGDTSVKFVPTTEQHADILTQALSRASLQYHRRKL 832          
BLAST of mRNA_H-elongata_contig10848.689.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 1.320e-55
Identity = 124/407 (30.47%), Postives = 210/407 (51.60%), Query Frame = 1
Query:   46 RQLNVDMVYLEANVEEEIYIELPEGYRDSKKQVDLLKEAMYGLVNAGLFWSKRFRTELKAKGFERFQADPCVLRRVLREKVVXXXXXXXXXLLVASATKRDEEQVLKDLHSCFPIKDLGEVSFYLGYYISRDRDAGKLRLNHHQYLQTLAEHFEITKTSAIPPAARGKPLSKADGPQTSADA*ETRWITYREALGTLIWVATMTRPYISFALNQLAKFNDNPGPIRCKAARKAIQYMSRTKSLGVTCRSTPGESEKLSAWVDADHGTFPDTH*LVSGGEVMMGNGTISWLSRVQKVTATASLE**NVALVETVNELRFLQQVKEFRMSPIDIR-IKILEDNEGAIKMSKNRVRSPRTRHMDVKYHIINDAIDEGIIQIKYVPFEEHHVNIITKALDVKTFEKHLRFL 1263
            R  ++   +++++++E++++ LPEG       +  L +++YGL  A   W       L   GF +  AD CV R +   +VV         +      +R + Q  +DL++  P+K+LG++ +Y G +  RD DAG L+++   Y + L   F +     IP    G  LS+ D      D     W  +RE +G+L+W+AT TRP I+ A+  +A++  +P  I  +A    + Y+ RT  LG+T R        +  +VDAD+ +       VSGG VM G G ISW SR QK    ++ E   V+L + + E+ FL+QV  F +    +  I + EDN+GAI++++N + +  ++H+DV++H I + +    I I +V     H + +TKAL    FE H  ++
Sbjct:  210 RHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCD-QFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPV-GLKLSEFD-----QDEEVVSW-PFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYV 608          
BLAST of mRNA_H-elongata_contig10848.689.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 1.900e-55
Identity = 115/404 (28.47%), Postives = 209/404 (51.73%), Query Frame = 1
Query:   55 NVDMVYLEANVEEEIYIELPEGYRDSKKQVDLLKEAMYGLVNAGLFWSKRFRTELKAKGFERFQADPCVLRRVLREKVVXXXXXXXXXLLVASATKRDEEQVLKDLHSCFPIKDLGEVSFYLGYYISRDRDAGKLRLNHHQYLQTLAEHFEITKTSAIPPAARGKPLSKADGPQTSADA*ETRWITYREALGTLIWVATMTRPYISFALNQLAKFNDNPGPIRCKAARKAIQYMSRTKSLGVTCRSTPGESEKLSAWVDADHGTFPDTH*LVSGGEVMMGNGTISWLSRVQKVTATASLE**NVALVETVNELRFLQQVKEFRMSPIDIR-IKILEDNEGAIKMSKNRVRSPRTRHMDVKYHIINDAIDEGIIQIKYVPFEEHHVNIITKALDVKTFEKHLRFL 1263
            +V+  ++ + +EE++Y+ LP+G       +  L +++YGL  A   W    +  L A GFE+  AD CV R +    VV         +      +R ++    DL+   P+K+LGE+ +Y G +  R+++ G+L ++   +   LA  + +    ++P ++ G  LS  D  + + +        +RE +G+L+W+AT TRP I+ A+  +A++  +P  +   AA   + Y  RT   G++ +    E   L  + DAD  +       VSGG V  G G +SW SR QK    ++ E   VAL + V E+ FL+Q+  F +  + +  I + EDN+GAI++++N + +  ++H+DV++H + + ++   I + +VP      + +TK+L    FE H  F+
Sbjct:   63 DVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDK-FGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSS-GVKLSDFDADEVATE------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESHRDFV 458          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10848.689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRE7_9PHAE2.290e-6032.73Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE3.900e-6033.65Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE4.530e-6033.65Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE4.640e-6033.65Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JN00_9PHAE9.720e-5933.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCG0_9PHAE1.130e-5733.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLN0_9PHAE3.730e-5730.47Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQN6_9PHAE6.840e-5632.55Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE1.320e-5530.47Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JFG2_9PHAE1.900e-5528.47Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10848contigH-elongata_contig10848:5467..6729 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score97.1
Seed ortholog evalue1e-17
Seed eggNOG ortholog4081.Solyc11g062200.1.1
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,44UC5@71274,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1263
Cds size588
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10848.689.1prot_H-elongata_contig10848.689.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10848 6136..6723 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929613.3509557-UTR-H-elongata_contig10848:5466..61351622929613.3509557-UTR-H-elongata_contig10848:5466..6135Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10848 5467..6135 -
1691679091.4189851-UTR-H-elongata_contig10848:5466..61351691679091.4189851-UTR-H-elongata_contig10848:5466..6135Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10848 5467..6135 -
1622929613.3780673-UTR-H-elongata_contig10848:6723..67291622929613.3780673-UTR-H-elongata_contig10848:6723..6729Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10848 6724..6729 -
1691679091.4384413-UTR-H-elongata_contig10848:6723..67291691679091.4384413-UTR-H-elongata_contig10848:6723..6729Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10848 6724..6729 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929613.365019-CDS-H-elongata_contig10848:6135..67231622929613.365019-CDS-H-elongata_contig10848:6135..6723Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10848 6136..6723 -
1691679091.4293127-CDS-H-elongata_contig10848:6135..67231691679091.4293127-CDS-H-elongata_contig10848:6135..6723Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10848 6136..6723 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10848.689.1

>prot_H-elongata_contig10848.689.1 ID=prot_H-elongata_contig10848.689.1|Name=mRNA_H-elongata_contig10848.689.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=196bp
MVLGIIAILGWEVRQLNVDMVYLEANVEEEIYIELPEGYRDSKKQVDLLK
EAMYGLVNAGLFWSKRFRTELKAKGFERFQADPCVLRRVLREKVVVIIVV
YVDDLLVASATKRDEEQVLKDLHSCFPIKDLGEVSFYLGYYISRDRDAGK
LRLNHHQYLQTLAEHFEITKTSAIPPAARGKPLSKADGPQTSADA*
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mRNA from alignment at H-elongata_contig10848:5467..6729-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10848.689.1 ID=mRNA_H-elongata_contig10848.689.1|Name=mRNA_H-elongata_contig10848.689.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1263bp|location=Sequence derived from alignment at H-elongata_contig10848:5467..6729- (Himanthalia elongata Himel1 dioecious)
ATCAGGATGGTTCTCGGGATTATCGCGATTCTCGGCTGGGAGGTACGACA GCTCAACGTCGATATGGTCTACCTGGAAGCCAACGTGGAGGAAGAAATAT ACATTGAACTTCCGGAAGGGTACCGCGATTCCAAGAAGCAAGTCGACCTG TTGAAAGAGGCCATGTACGGCCTCGTCAACGCTGGCCTCTTTTGGTCGAA AAGGTTTAGAACCGAGCTGAAGGCGAAGGGATTCGAGCGGTTTCAAGCTG ATCCATGCGTGTTGCGGCGGGTACTACGCGAGAAAGTGGTCGTCATCATC GTGGTTTACGTGGACGACCTGCTGGTAGCAAGTGCAACGAAGCGCGACGA GGAGCAAGTGTTGAAAGACCTCCACTCCTGCTTTCCCATCAAGGACTTGG GAGAAGTCTCGTTCTACCTCGGATACTACATTTCTCGGGACCGAGACGCA GGAAAGCTGAGGTTGAATCATCACCAATACTTGCAAACATTGGCGGAGCA CTTCGAAATTACGAAAACTAGCGCCATCCCACCGGCAGCTAGAGGGAAAC CGCTCTCAAAAGCCGATGGCCCCCAAACATCCGCTGACGCCTAGGAAACG CGTTGGATTACCTACCGAGAAGCACTCGGGACCCTCATTTGGGTCGCAAC CATGACGCGACCGTATATCTCCTTCGCACTTAACCAACTCGCTAAGTTCA ACGATAATCCAGGACCAATACGTTGCAAGGCCGCCCGGAAGGCGATACAA TATATGTCGCGCACGAAGAGCCTCGGCGTCACCTGTAGAAGTACGCCGGG GGAGAGCGAAAAACTATCGGCATGGGTAGACGCGGACCACGGTACCTTCC CTGACACGCACTGATTAGTTTCAGGCGGGGAAGTTATGATGGGCAATGGC ACCATCAGCTGGTTATCGCGAGTTCAGAAAGTGACGGCTACTGCGTCATT AGAGTGATAAAACGTGGCGCTGGTAGAAACAGTAAACGAGTTGCGATTTC TTCAACAAGTAAAGGAGTTCAGGATGTCCCCAATTGACATCCGCATCAAG ATCCTCGAAGATAACGAAGGCGCAATTAAAATGTCGAAAAATCGTGTCAG GAGTCCACGAACCAGACATATGGATGTAAAGTACCACATCATTAACGACG CAATAGACGAGGGAATTATACAGATAAAGTACGTTCCATTCGAAGAGCAT CATGTAAACATTATAACAAAGGCATTGGACGTAAAAACCTTCGAGAAGCA CTTAAGATTTCTT
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Coding sequence (CDS) from alignment at H-elongata_contig10848:5467..6729-

>mRNA_H-elongata_contig10848.689.1 ID=mRNA_H-elongata_contig10848.689.1|Name=mRNA_H-elongata_contig10848.689.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1176bp|location=Sequence derived from alignment at H-elongata_contig10848:5467..6729- (Himanthalia elongata Himel1 dioecious)
ATGGTTCTCGGGATTATCGCGATTCTCGGCTGGGAGGTACGACAGCTCAA
CGTCGATATGGTCTACCTGGAAGCCAACGTGGAGGAAGAAATATACATTG
AACTTCCGGAAGGGTACCGCGATTCCAAGAAGCAAGTCGACCTGTTGAAA
GAGGCCATGTACGGCCTCGTCAACGCTGGCCTCTTTTGGTCGAAAAGGTT
TAGAACCGAGCTGAAGGCGAAGGGATTCGAGCGGTTTCAAGCTGATCCAT
GCGTGTTGCGGCGGGTACTACGCGAGAAAGTGGTCGTCATCATCGTGGTT
TACGTGGACGACCTGCTGGTAGCAAGTGCAACGAAGCGCGACGAGGAGCA
AGTGTTGAAAGACCTCCACTCCTGCTTTCCCATCAAGGACTTGGGAGAAG
TCTCGTTCTACCTCGGATACTACATTTCTCGGGACCGAGACGCAGGAAAG
CTGAGGTTGAATCATCACCAATACTTGCAAACATTGGCGGAGCACTTCGA
AATTACGAAAACTAGCGCCATCCCACCGGCAGCTAGAGGGAAACCGCTCT
CAAAAGCCGATGGCCCCCAAACATCCGCTGACGCCTAGATGGTTCTCGGG
ATTATCGCGATTCTCGGCTGGGAGGTACGACAGCTCAACGTCGATATGGT
CTACCTGGAAGCCAACGTGGAGGAAGAAATATACATTGAACTTCCGGAAG
GGTACCGCGATTCCAAGAAGCAAGTCGACCTGTTGAAAGAGGCCATGTAC
GGCCTCGTCAACGCTGGCCTCTTTTGGTCGAAAAGGTTTAGAACCGAGCT
GAAGGCGAAGGGATTCGAGCGGTTTCAAGCTGATCCATGCGTGTTGCGGC
GGGTACTACGCGAGAAAGTGGTCGTCATCATCGTGGTTTACGTGGACGAC
CTGCTGGTAGCAAGTGCAACGAAGCGCGACGAGGAGCAAGTGTTGAAAGA
CCTCCACTCCTGCTTTCCCATCAAGGACTTGGGAGAAGTCTCGTTCTACC
TCGGATACTACATTTCTCGGGACCGAGACGCAGGAAAGCTGAGGTTGAAT
CATCACCAATACTTGCAAACATTGGCGGAGCACTTCGAAATTACGAAAAC
TAGCGCCATCCCACCGGCAGCTAGAGGGAAACCGCTCTCAAAAGCCGATG
GCCCCCAAACATCCGCTGACGCCTAG
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