mRNA_H-elongata_contig108418.686.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig108418.686.1
Unique NamemRNA_H-elongata_contig108418.686.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig108418.686.1 vs. uniprot
Match: D7FPM4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPM4_ECTSI)

HSP 1 Score: 271 bits (692), Expect = 8.970e-79
Identity = 181/425 (42.59%), Postives = 237/425 (55.76%), Query Frame = 1 
Query:   22 LDWRQGLEILREAKRAGVSFTPEVMLILLTKVPPGNSRKISRVVTADLSRLYGLEASS-DMLAVAAVAHWRAGVVTGASRLLDEM--------KEIPASPSPLVQDWMAKEAQHVYAASRSVAVGATRP-----RRWTWQLVVVDIYGRAGRWAKAAEAFDTFVVE----------------------------------------------SFGSATASNPTLGRLPLPEEPGGDLMTADGVAAAAEL--------WASIHPSPLAHAVTAYIKLNKVDGAARTLSFLRTSLSASVPSVATNGVNPAAIPTNNEGRRDNFGG---DDKLPLGPP--DPAWMTLAVRGFARLGRWGMIMEVLCPEICGWASDDSGSE--NNERARGFQL--ALSSLESFLEHKSRAKRPAPGQIAEVKSCLETME 1065
            LDWR+ LE+++EA  AGV   P++M ++L+KVP GNSRKISR+V+   SR +GL+AS+ DMLAVAAVAHWR GVVTGA+R LDEM        KE+ ASPS LVQ+W+A + Q +  A+ + AV  T P     R+W W+LV VDIYGRA RWA AAEAFD F+ +                                              +  SA  + PT  RLPLPEE G           A E         W S HPS +AHA+TAY+KL +V+ AA  LSFL+ S+ A   + A  G++P  +  + EG    +GG    D    GPP  DP WM   VRGF R G+W M +EVL  +I  W S ++G +  + +   G +L  A  SLE+FLE K  AK+PA GQ+A  K+CLE ++
Sbjct:  221 LDWRRALEVIKEAHLAGVEVRPDLMALVLSKVPVGNSRKISRLVSNKGSRAFGLQASTPDMLAVAAVAHWREGVVTGAARHLDEMFARIKKLNKEMVASPSSLVQEWLAADRQRIRDAAAAAAV-ETPPSHPPERQWPWRLVAVDIYGRANRWAAAAEAFDAFIGDMGFPSSRNGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHVSARIAKPT--RLPLPEEFGXXXXXXXXXXKAGEFSSPLPLQAWLSFHPSAIAHAITAYLKLGRVEEAAEVLSFLKASVRAGGATPAAGGLSPGYVGGSEEG--GGYGGRAGSDPSLSGPPTVDPGWMEGTVRGFTRAGKWDMALEVLSTDIVAWFSAETGGDRRSGDGGGGARLVAASESLEAFLEAKLXAKKPASGQVAGSKACLELLK 640
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108418.686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPM4_ECTSI8.970e-7942.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig108418contigH-elongata_contig108418:262..2037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1065
Cds size1065
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig108418.686.1prot_H-elongata_contig108418.686.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig108418 262..2037 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929612.280854-CDS-H-elongata_contig108418:261..3991622929612.280854-CDS-H-elongata_contig108418:261..399Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108418 262..399 +
1691679091.31716-CDS-H-elongata_contig108418:261..3991691679091.31716-CDS-H-elongata_contig108418:261..399Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108418 262..399 +
1622929612.2920253-CDS-H-elongata_contig108418:595..7331622929612.2920253-CDS-H-elongata_contig108418:595..733Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108418 596..733 +
1691679091.3250196-CDS-H-elongata_contig108418:595..7331691679091.3250196-CDS-H-elongata_contig108418:595..733Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108418 596..733 +
1622929612.9368343-CDS-H-elongata_contig108418:1248..20371622929612.9368343-CDS-H-elongata_contig108418:1248..2037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108418 1249..2037 +
1691679091.3337958-CDS-H-elongata_contig108418:1248..20371691679091.3337958-CDS-H-elongata_contig108418:1248..2037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108418 1249..2037 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig108418.686.1

>prot_H-elongata_contig108418.686.1 ID=prot_H-elongata_contig108418.686.1|Name=mRNA_H-elongata_contig108418.686.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=355bp
MGDISGHLDWRQGLEILREAKRAGVSFTPEVMLILLTKVPPGNSRKISRV
VTADLSRLYGLEASSDMLAVAAVAHWRAGVVTGASRLLDEMKEIPASPSP
LVQDWMAKEAQHVYAASRSVAVGATRPRRWTWQLVVVDIYGRAGRWAKAA
EAFDTFVVESFGSATASNPTLGRLPLPEEPGGDLMTADGVAAAAELWASI
HPSPLAHAVTAYIKLNKVDGAARTLSFLRTSLSASVPSVATNGVNPAAIP
TNNEGRRDNFGGDDKLPLGPPDPAWMTLAVRGFARLGRWGMIMEVLCPEI
CGWASDDSGSENNERARGFQLALSSLESFLEHKSRAKRPAPGQIAEVKSC
LETME
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mRNA from alignment at H-elongata_contig108418:262..2037+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig108418.686.1 ID=mRNA_H-elongata_contig108418.686.1|Name=mRNA_H-elongata_contig108418.686.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1776bp|location=Sequence derived from alignment at H-elongata_contig108418:262..2037+ (Himanthalia elongata Himel1 dioecious)
ATGGGTGATATTTCCGGCCACCTCGATTGGAGGCAAGGACTGGAGATTCT
ACGTGAGGCGAAGCGTGCAGGGGTCAGCTTTACCCCGGAAGTCATGTTGA
TTTTGCTCACCAAGGTTCCGCCGGGAAACTCTCGGAAGGTAACTTGGCGA
GTAGAGATACCGCGATAAACGCACACACCCATAATATACACGGTACCGCA
GCATATGAAGTTGCCAAACTGCCTTCACTAGCGAAAGTACCTCTACTAAC
GCGTGACAGAACCACGTGATCTATCTGCGACTATCTAGGCTCTCGTCATT
CTCCGGCGCTGATTTCCCTCAACCAATCCATCAGATCTCCCGCGTGGTCA
CTGCCGATCTATCGCGCTTGTACGGGTTGGAGGCTTCGTCGGACATGTTG
GCCGTAGCCGCCGTCGCCCATTGGAGGGCCGGGGTGGTCACCGGAGCGTC
TCGCCTCCTGGACGAGATGAAGGTGAAAGAGACGAACGGGCCGGACTGGC
TCAAGTCAGATTGAGGAGAAATGTATCTATATTCCTGTCCCATGAATAAA
AAAAAAATCTTCTACAAAGGAATAAACCATCGTTGTGATGGTATTGTAAT
GTACAGACCACCGAGTTCTTGATCTGATCGATCCTGTTGATACACATCAT
TCCTACAGAGTTGGAAGAAAGTACTTTGCGTAGGAAAACCTGAAAATAGC
GTCTCCCAGCCCGATCTGCCACGAAAGCTCTACGTAGGCCCTTGTCCAAT
CTTCTCCTTTCTGACACACCTTCTTATCTTATTTGCCTCAGCTTTTTAGC
AACCGCCAGCTCTTGCTCTGCCGGTAGTCGCCACAAAATGATCTTGAGAC
CCCGTGCGTGCGAGCGATCCGAGTCCAGATCGTACGTGGTCGAATTGTTT
CTTCACTGTGCGTCCTTTCTGCACCGAGGTCTTGACCTGCCCTCTCCCCT
CCTCTACCCCGCTATCCCGCCCCTCTCCACACCCCAGGAGATTCCCGCCT
CACCCAGCCCTCTTGTACAAGACTGGATGGCGAAAGAGGCTCAACACGTC
TACGCCGCGTCTCGGTCAGTCGCAGTCGGCGCAACCCGCCCACGACGGTG
GACGTGGCAACTGGTCGTCGTGGACATCTACGGACGCGCAGGGCGCTGGG
CCAAGGCGGCCGAGGCCTTCGACACCTTCGTTGTCGAGTCCTTCGGCAGC
GCCACCGCATCCAACCCGACCCTGGGGCGGCTGCCCCTGCCGGAGGAGCC
AGGCGGCGACCTCATGACCGCTGACGGCGTGGCCGCAGCGGCCGAGCTCT
GGGCGTCCATCCACCCGTCACCGCTAGCCCACGCGGTTACGGCATACATC
AAGCTGAACAAGGTCGACGGCGCGGCGCGTACGCTCTCTTTCCTGAGGAC
CAGCCTCTCTGCTAGTGTCCCTTCCGTTGCCACCAATGGTGTAAATCCCG
CCGCTATCCCGACGAACAATGAAGGTCGTCGGGACAACTTCGGAGGGGAC
GATAAGCTTCCCCTCGGTCCACCGGACCCCGCGTGGATGACACTTGCCGT
GCGTGGTTTCGCGCGCCTGGGGCGGTGGGGTATGATCATGGAGGTTCTTT
GTCCGGAGATCTGCGGGTGGGCCTCGGACGACTCAGGCTCTGAAAATAAT
GAGCGCGCGAGGGGATTCCAGCTCGCCCTGAGCTCGCTGGAGTCGTTTCT
GGAGCACAAGAGTAGGGCCAAAAGACCTGCGCCAGGGCAAATCGCTGAGG
TGAAGTCGTGCCTGGAGACTATGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig108418:262..2037+

>mRNA_H-elongata_contig108418.686.1 ID=mRNA_H-elongata_contig108418.686.1|Name=mRNA_H-elongata_contig108418.686.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2130bp|location=Sequence derived from alignment at H-elongata_contig108418:262..2037+ (Himanthalia elongata Himel1 dioecious)
ATGGGTGATATTTCCGGCCACCTCGATTGGAGGCAAGGACTGGAGATTCT
ACGTGAGGCGAAGCGTGCAGGGGTCAGCTTTACCCCGGAAGTCATGTTGA
TTTTGCTCACCAAGGTTCCGCCGGGAAACTCTCGGAAGATGGGTGATATT
TCCGGCCACCTCGATTGGAGGCAAGGACTGGAGATTCTACGTGAGGCGAA
GCGTGCAGGGGTCAGCTTTACCCCGGAAGTCATGTTGATTTTGCTCACCA
AGGTTCCGCCGGGAAACTCTCGGAAGATCTCCCGCGTGGTCACTGCCGAT
CTATCGCGCTTGTACGGGTTGGAGGCTTCGTCGGACATGTTGGCCGTAGC
CGCCGTCGCCCATTGGAGGGCCGGGGTGGTCACCGGAGCGTCTCGCCTCC
TGGACGAGATGAAGATCTCCCGCGTGGTCACTGCCGATCTATCGCGCTTG
TACGGGTTGGAGGCTTCGTCGGACATGTTGGCCGTAGCCGCCGTCGCCCA
TTGGAGGGCCGGGGTGGTCACCGGAGCGTCTCGCCTCCTGGACGAGATGA
AGGAGATTCCCGCCTCACCCAGCCCTCTTGTACAAGACTGGATGGCGAAA
GAGGCTCAACACGTCTACGCCGCGTCTCGGTCAGTCGCAGTCGGCGCAAC
CCGCCCACGACGGTGGACGTGGCAACTGGTCGTCGTGGACATCTACGGAC
GCGCAGGGCGCTGGGCCAAGGCGGCCGAGGCCTTCGACACCTTCGTTGTC
GAGTCCTTCGGCAGCGCCACCGCATCCAACCCGACCCTGGGGCGGCTGCC
CCTGCCGGAGGAGCCAGGCGGCGACCTCATGACCGCTGACGGCGTGGCCG
CAGCGGCCGAGCTCTGGGCGTCCATCCACCCGTCACCGCTAGCCCACGCG
GTTACGGCATACATCAAGCTGAACAAGGTCGACGGCGCGGCGCGTACGCT
CTCTTTCCTGAGGACCAGCCTCTCTGCTAGTGTCCCTTCCGTTGCCACCA
ATGGTGTAAATCCCGCCGCTATCCCGACGAACAATGAAGGTCGTCGGGAC
AACTTCGGAGGGGACGATAAGCTTCCCCTCGGTCCACCGGACCCCGCGTG
GATGACACTTGCCGTGCGTGGTTTCGCGCGCCTGGGGCGGTGGGGTATGA
TCATGGAGGTTCTTTGTCCGGAGATCTGCGGGTGGGCCTCGGACGACTCA
GGCTCTGAAAATAATGAGCGCGCGAGGGGATTCCAGCTCGCCCTGAGCTC
GCTGGAGTCGTTTCTGGAGCACAAGAGTAGGGCCAAAAGACCTGCGCCAG
GGCAAATCGCTGAGGTGAAGTCGTGCCTGGAGACTATGGAGGAGATTCCC
GCCTCACCCAGCCCTCTTGTACAAGACTGGATGGCGAAAGAGGCTCAACA
CGTCTACGCCGCGTCTCGGTCAGTCGCAGTCGGCGCAACCCGCCCACGAC
GGTGGACGTGGCAACTGGTCGTCGTGGACATCTACGGACGCGCAGGGCGC
TGGGCCAAGGCGGCCGAGGCCTTCGACACCTTCGTTGTCGAGTCCTTCGG
CAGCGCCACCGCATCCAACCCGACCCTGGGGCGGCTGCCCCTGCCGGAGG
AGCCAGGCGGCGACCTCATGACCGCTGACGGCGTGGCCGCAGCGGCCGAG
CTCTGGGCGTCCATCCACCCGTCACCGCTAGCCCACGCGGTTACGGCATA
CATCAAGCTGAACAAGGTCGACGGCGCGGCGCGTACGCTCTCTTTCCTGA
GGACCAGCCTCTCTGCTAGTGTCCCTTCCGTTGCCACCAATGGTGTAAAT
CCCGCCGCTATCCCGACGAACAATGAAGGTCGTCGGGACAACTTCGGAGG
GGACGATAAGCTTCCCCTCGGTCCACCGGACCCCGCGTGGATGACACTTG
CCGTGCGTGGTTTCGCGCGCCTGGGGCGGTGGGGTATGATCATGGAGGTT
CTTTGTCCGGAGATCTGCGGGTGGGCCTCGGACGACTCAGGCTCTGAAAA
TAATGAGCGCGCGAGGGGATTCCAGCTCGCCCTGAGCTCGCTGGAGTCGT
TTCTGGAGCACAAGAGTAGGGCCAAAAGACCTGCGCCAGGGCAAATCGCT
GAGGTGAAGTCGTGCCTGGAGACTATGGAG
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