prot_H-elongata_contig10833.680.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig10833.680.1
Unique Nameprot_H-elongata_contig10833.680.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length182
Homology
BLAST of mRNA_H-elongata_contig10833.680.1 vs. uniprot
Match: A0A6H5KZ63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ63_9PHAE)

HSP 1 Score: 312 bits (799), Expect = 1.850e-104
Identity = 151/177 (85.31%), Postives = 160/177 (90.40%), Query Frame = 0
Query:    1 MPRWQDSGRPRGYAHVAFAGLSGARAAFGLDGQYLKGRYLTIQEPQEPATEKVRRANRSAEQPRGCQTVFVKNLPYDADEDGVREALAGCGRITSVRLAMWNHTRKLKGFGYVEFVSERGAEACVRMQEKLSVGGRPLVVDFETGAPKGSFRRQDGAQIKKTSANAGVGRGKPAKFK 177
            MPRWQDSGRPRGYAHVAFAG SGA+AAFG DGQYL GRYLT+Q PQEPATEK RRANR AEQP GC+TVFVKNLPYD +ED V EALAGCGRI SVRLAMWNHTRKLKGFGYVEF +ERGAE CVR Q+ LS+GGRPLVVDFETGAPKGSFRRQDGAQIKKTSA+AGVG+GK  KFK
Sbjct:  160 MPRWQDSGRPRGYAHVAFAGSSGAQAAFGRDGQYLNGRYLTVQAPQEPATEKARRANRKAEQPAGCRTVFVKNLPYDVEEDAVSEALAGCGRIASVRLAMWNHTRKLKGFGYVEFSTERGAETCVRTQQSLSIGGRPLVVDFETGAPKGSFRRQDGAQIKKTSADAGVGKGKAPKFK 336          
BLAST of mRNA_H-elongata_contig10833.680.1 vs. uniprot
Match: D7FP47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP47_ECTSI)

HSP 1 Score: 307 bits (787), Expect = 1.810e-102
Identity = 153/189 (80.95%), Postives = 161/189 (85.19%), Query Frame = 0
Query:    1 MPRWQDSGRPRGYAHVAFAGLSGARAAFGLDGQYLKGRYLTIQE------------PQEPATEKVRRANRSAEQPRGCQTVFVKNLPYDADEDGVREALAGCGRITSVRLAMWNHTRKLKGFGYVEFVSERGAEACVRMQEKLSVGGRPLVVDFETGAPKGSFRRQDGAQIKKTSANAGVGRGKPAKFK 177
            MPRWQDSGRPRGYAHVAFAG SGARAAFG DGQYL GRYLT+Q+            PQEPATEK RRANR AEQP GC+TVFVKNLPYD DED V EALAGCGRI SVRLAMWNHTRKLKGFGYVEF +ERGAE CVR Q+ LS+GGRPLVVDFETGAPKGSFRRQDGAQIKKTSA+AGVG+GK  KFK
Sbjct:  160 MPRWQDSGRPRGYAHVAFAGSSGARAAFGRDGQYLNGRYLTVQQITVESNNHALQAPQEPATEKARRANRKAEQPTGCRTVFVKNLPYDVDEDAVSEALAGCGRIASVRLAMWNHTRKLKGFGYVEFSTERGAETCVRTQQNLSIGGRPLVVDFETGAPKGSFRRQDGAQIKKTSADAGVGKGKAPKFK 348          
BLAST of mRNA_H-elongata_contig10833.680.1 vs. uniprot
Match: A0A836CEI7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEI7_9STRA)

HSP 1 Score: 186 bits (473), Expect = 8.640e-54
Identity = 88/163 (53.99%), Postives = 116/163 (71.17%), Query Frame = 0
Query:    1 MPRWQDSGRPRGYAHVAFAGLSGARAAFGLDGQYLKGRYLTIQEPQEPATEKVRRANRSAEQPRGCQTVFVKNLPYDADEDGVREALAGCGRITSVRLAMWNHTRKLKGFGYVEFVSERGAEACVRMQEKLSVGGRPLVVDFETGAPKGSFRRQDGAQIKKTS 163
            MPR+QDSGRPRGYAHV FA  + A  AF  DG+YL+GRYL +Q+ Q P   + +    +A +P+GC+TVFVKNLPYDADE  V +A + CG +  VRLA+WN+T++ KGFGYV+F  E GA+A V  Q  + V GRP++VD+E G  KGSFR  DG + +K +
Sbjct:  261 MPRYQDSGRPRGYAHVVFASDAAAAKAFKKDGEYLQGRYLKVQQAQAPRALQAQSQAAAAPRPKGCRTVFVKNLPYDADEQMVTKAFSKCGEVAIVRLAIWNNTKQRKGFGYVDFADETGAQAAVERQANIKVAGRPVLVDYEVGRVKGSFRLADGQKYEKVA 423          
BLAST of mRNA_H-elongata_contig10833.680.1 vs. uniprot
Match: W7TYE4_9STRA (31 kDa chloroplastic n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYE4_9STRA)

HSP 1 Score: 169 bits (429), Expect = 4.660e-49
Identity = 85/162 (52.47%), Postives = 105/162 (64.81%), Query Frame = 0
Query:    1 MPRWQDSGRPRGYAHVAFAGLS-GARAAFGLDGQYLKGRYLTIQEPQEPATEKVRRANRSAEQPRGCQTVFVKNLPYDADEDGVREALAGCGRITSVRLAMWNHTRKLKGFGYVEFVSERGAEACVRMQEKLSVGGRPLVVDFETGAPKGSFRRQDGAQIKK 161
            +PRWQDSGRPRGYAH+ F     G   A  L G  + GRYLT+Q  Q P +  V  +    ++P GC TVFVKNLPY+  ED VREA   CG+I +VRLA+W HT++ KGF YV+F  E  AE  V+ Q  + VGGR + VD+ETGAPK S+R  DG Q  K
Sbjct:  127 LPRWQDSGRPRGYAHIEFKKTDEGVAKALSLSGARMMGRYLTVQRAQAPKSLGVGGSLPLKDKPPGCDTVFVKNLPYNTTEDAVREAFTFCGKIKTVRLAVWQHTQQQKGFCYVQFEKENAAEIAVKKQGAIQVGGRKVFVDYETGAPKASYRAPDGRQWSK 288          
BLAST of mRNA_H-elongata_contig10833.680.1 vs. uniprot
Match: A0A6G0WFD1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WFD1_9STRA)

HSP 1 Score: 169 bits (427), Expect = 1.060e-48
Identity = 81/157 (51.59%), Postives = 109/157 (69.43%), Query Frame = 0
Query:    1 MPRWQDSGRPRGYAHVAFAGLSGARAAFGLDGQYLKGRYLTIQEPQEP-ATEKVRRANRSAEQPRGCQTVFVKNLPYDADEDGVREALAGCGRITSVRLAMWNHTRKLKGFGYVEFVSERGAEACVRMQEKLSVGGRPLVVDFETGAPKGSFRRQDG 156
            +PR+QDSGRPRGYAHV F   + A+ A  LDG+YL  RYLTI+  + P   ++ R + ++ +  +GC+TVF+K LPYD DE  V+EAL+ CG I SVRL +WNHT+KLKGFGYVEF  E  A    + +  + +G R +++D +TGAPK SFR  DG
Sbjct:  109 LPRYQDSGRPRGYAHVVFDSEASAKKALALDGKYLLKRYLTIRPAETPRGMDQARSSRKNVKITKGCRTVFIKQLPYDVDEATVKEALSSCGDIVSVRLPLWNHTKKLKGFGYVEFADEASAVEATK-KSGMKIGSRMVLIDLDTGAPKASFRNTDG 264          
BLAST of mRNA_H-elongata_contig10833.680.1 vs. uniprot
Match: A0A485L4I6_9STRA (Aste57867_15645 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L4I6_9STRA)

HSP 1 Score: 166 bits (421), Expect = 8.910e-48
Identity = 78/158 (49.37%), Postives = 109/158 (68.99%), Query Frame = 0
Query:    1 MPRWQDSGRPRGYAHVAFAGLSGARAAFGLDGQYLKGRYLTIQEPQEPA--TEKVRRANRSAEQPRGCQTVFVKNLPYDADEDGVREALAGCGRITSVRLAMWNHTRKLKGFGYVEFVSERGAEACVRMQEKLSVGGRPLVVDFETGAPKGSFRRQDG 156
            +PRW DSG+PRGY HV F   + A+ A  LDG+Y+  RYLTI++ + P      V+   +SA+  +GC+TV++K LPY+ +ED V++ALA CG I SVRL MW HT+KLKGFGYVEF  E GA    + +  + +G R +++D +TGAPK SFR+ +G
Sbjct:  107 LPRWHDSGKPRGYGHVVFETEAAAKKALALDGKYMLKRYLTIRQAEAPRGIERAVQNRKQSAKPTKGCRTVYIKQLPYEVEEDTVKQALASCGEILSVRLPMWGHTKKLKGFGYVEFADEAGAVKATK-RSGMKIGDRMVLIDLDTGAPKASFRQTNG 263          
BLAST of mRNA_H-elongata_contig10833.680.1 vs. uniprot
Match: A0A2D4BXX0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXX0_PYTIN)

HSP 1 Score: 164 bits (415), Expect = 4.490e-46
Identity = 85/160 (53.12%), Postives = 110/160 (68.75%), Query Frame = 0
Query:    1 MPRWQDSGRPRGYAHVAFAGLSGARAAFGLDGQYLKGRYLTIQEPQEPATEKVRRANRSAEQP--RGCQTVFVKNLPYDADEDGVREALAGCGRITSVRLAMWNHTRKLKGFGYVEFVSERGAEACVRMQEKLSVGGRPLVVDFETG--APKGSFRRQDG 156
            MPR+QDSG+PRGYAHV F   S    A  LDG+YL GRYLT+++ + P T  V    + + +   +GC+TVF+K+LPYD +E  VREALA CG I SVRL +WNHT+KLKGFGYVEF SE  A A V+ +  + +G R +++  ET   APK SFR +DG
Sbjct:  180 MPRYQDSGKPRGYAHVVFESASSIPKALKLDGKYLFGRYLTVKQAERPRTLDVALQEQKSVKKAVKGCRTVFIKHLPYDVEEAAVREALASCGTILSVRLPLWNHTKKLKGFGYVEFSSEDEAIAAVK-RSGMKIGDRMVIISLETAGSAPKASFRLRDG 338          
BLAST of mRNA_H-elongata_contig10833.680.1 vs. uniprot
Match: A0A225WYL6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WYL6_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.100e-45
Identity = 84/162 (51.85%), Postives = 111/162 (68.52%), Query Frame = 0
Query:    1 MPRWQDSGRPRGYAHVAFAGLSGARAAFGLDGQYLKGRYLTIQEPQEP-ATE---KVRRANRSAEQPRGCQTVFVKNLPYDADEDGVREALAGCGRITSVRLAMWNHTRKLKGFGYVEFVSERGAEACVRMQEKLSVGGRPLVVDFETG--APKGSFRRQDG 156
            MPR+QDSG+PRGYAHV F   +  + A  LDGQYL  RYL+I+  + P A E   K +  N + +  +GC+TVF+K LPY+ +ED +REALA CG ITSVRL +WNHT+KLKGFGYVEF SE  A A  R +  + +G R +++  +    APK SFR++DG
Sbjct:   94 MPRYQDSGKPRGYAHVVFDDEAALKKALKLDGQYLFNRYLSIRRAEAPRAVEMALKEKNQNTNKKAVKGCRTVFIKQLPYEVEEDAIREALASCGTITSVRLPIWNHTKKLKGFGYVEFSSEDEALAAAR-RSGMKIGDRMVLISLDAAGSAPKASFRQRDG 254          
BLAST of mRNA_H-elongata_contig10833.680.1 vs. uniprot
Match: K3WSU1_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSU1_GLOUD)

HSP 1 Score: 159 bits (402), Expect = 2.610e-44
Identity = 84/165 (50.91%), Postives = 107/165 (64.85%), Query Frame = 0
Query:    1 MPRWQDSGRPRGYAHVAFAGLSGARAAFGLDGQYLKGRYLTIQEPQEPATEKV--RRANRSAEQPRGCQTVFVKNLPYDADEDGVREALAGCGRITSVRLAMWNHTRKLKGFGYVEFVSERGAEACVRMQEKLSVGGRPLVVDFET-GAPKGSFRRQDGAQIKKT 162
            MPR+QDSGRPRGYAHV F        A  LDG+YL  RYL++   Q P T ++  +      +   GC+TVFVK LPYD +E  +R+ALA CG I SVRL +WNHT+KLKGFGYVEF  E  A A V+ +  + VGGR ++++ +  GAPK SFR+ DG    KT
Sbjct:  170 MPRYQDSGRPRGYAHVVFESEKAIPKALALDGKYLFKRYLSVSRAQTPRTLELALKETKNVKKAVVGCKTVFVKQLPYDIEEQALRDALASCGTIMSVRLPIWNHTKKLKGFGYVEFSKEEEAVAAVK-RSGMKVGGRMVIINLDVAGAPKASFRQTDGQYWNKT 333          
BLAST of mRNA_H-elongata_contig10833.680.1 vs. uniprot
Match: D0NV59_PHYIT (Uncharacterized protein n=12 Tax=Phytophthora TaxID=4783 RepID=D0NV59_PHYIT)

HSP 1 Score: 157 bits (396), Expect = 3.210e-44
Identity = 82/164 (50.00%), Postives = 109/164 (66.46%), Query Frame = 0
Query:    1 MPRWQDSGRPRGYAHVAFAGLSGARAAFGLDGQYLKGRYLTIQEPQEPAT------EKVRRANRSAEQPRGCQTVFVKNLPYDADEDGVREALAGCGRITSVRLAMWNHTRKLKGFGYVEFVSERGAEACVRMQEKLSVGGRPLVVDFETG--APKGSFRRQDG 156
            MPR+QDSG+PRGYAHV F   +    A  LDGQYL  RYL+I+  + P        EK + A + A   +GC+TV++K LPY+ +ED +R+ALA CG ITSVRL +WNHT+KLKGFGYVEF SE  A A  R +  + +G R +++  +    APK SFR++DG
Sbjct:   93 MPRYQDSGKPRGYAHVVFDDEAALEKALELDGQYLFNRYLSIRRAEAPRAVEMALKEKTQNATKKAV--KGCRTVYIKQLPYEVEEDTIRQALASCGTITSVRLPIWNHTKKLKGFGYVEFSSEDEALAAAR-RSGMKIGDRMVLISLDVAGSAPKASFRQRDG 253          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10833.680.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZ63_9PHAE1.850e-10485.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FP47_ECTSI1.810e-10280.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CEI7_9STRA8.640e-5453.99Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TYE4_9STRA4.660e-4952.4731 kDa chloroplastic n=2 Tax=Monodopsidaceae TaxID... [more]
A0A6G0WFD1_9STRA1.060e-4851.59Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485L4I6_9STRA8.910e-4849.37Aste57867_15645 protein n=1 Tax=Aphanomyces stella... [more]
A0A2D4BXX0_PYTIN4.490e-4653.13Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A225WYL6_9STRA1.100e-4551.85Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
K3WSU1_GLOUD2.610e-4450.91Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
D0NV59_PHYIT3.210e-4450.00Uncharacterized protein n=12 Tax=Phytophthora TaxI... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 68..141
e-value: 2.2E-18
score: 77.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 69..138
e-value: 2.3E-15
score: 56.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 67..145
score: 14.317
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..44
e-value: 5.4E-6
score: 28.3
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 45..160
e-value: 2.3E-22
score: 81.3
NoneNo IPR availablePANTHERPTHR23236EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4Hcoord: 1..64
coord: 49..163
NoneNo IPR availablePANTHERPTHR23236:SF9IP09423Pcoord: 1..64
coord: 49..163
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 60..158
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 5..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10833contigH-elongata_contig10833:6424..7859 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10833.680.1mRNA_H-elongata_contig10833.680.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig10833 5044..7940 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig10833.680.1 ID=prot_H-elongata_contig10833.680.1|Name=mRNA_H-elongata_contig10833.680.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=182bp
MPRWQDSGRPRGYAHVAFAGLSGARAAFGLDGQYLKGRYLTIQEPQEPAT
EKVRRANRSAEQPRGCQTVFVKNLPYDADEDGVREALAGCGRITSVRLAM
WNHTRKLKGFGYVEFVSERGAEACVRMQEKLSVGGRPLVVDFETGAPKGS
FRRQDGAQIKKTSANAGVGRGKPAKFKRVRA*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf