mRNA_H-elongata_contig108325.679.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig108325.679.1
Unique NamemRNA_H-elongata_contig108325.679.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig108325.679.1 vs. uniprot
Match: D8LK47_ECTSI (PolyA_pol domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK47_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 4.130e-12
Identity = 43/91 (47.25%), Postives = 61/91 (67.03%), Query Frame = 2 
Query:  119 SKRQRISNIQ-HMAASPIK-HVHPLGDRQPRGVIRGSNRFSSDLTMDISNSLTPTEAQVLGLMMEAVKHAESQTVVRIAGGWVRDKLLGLQ 385
            +KRQR  +I   MAA+  + H+ PL    PR   RG +     L M+I + L P EA +L +++EAVK++++ TVVR+AGGWVRDKLLGL+
Sbjct:    4 AKRQRTDSIGGDMAANRSREHMGPLA-LTPRNGRRGESAVGGTLKMNIVSCLKPNEADILAMLLEAVKYSKTGTVVRVAGGWVRDKLLGLE 93
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BLAST of mRNA_H-elongata_contig108325.679.1 vs. uniprot
Match: A0A835Z0V0_9STRA (PNPLA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0V0_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 4.250e-6
Identity = 30/54 (55.56%), Postives = 37/54 (68.52%), Query Frame = 2 
Query:  236 SDLTMDISNSLTPTEAQVLGLMMEAVKHAE----SQTVVRIAGGWVRDKLLGLQ 385
            S+L MD+ N LT  E QV  L++E+ K  E      TV+R+AGGWVRDKLLGLQ
Sbjct:    3 SNLHMDLRNRLTAKEQQVFKLLLESAKSQEHGSTGNTVIRVAGGWVRDKLLGLQ 56
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108325.679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LK47_ECTSI4.130e-1247.25PolyA_pol domain-containing protein n=2 Tax=Ectoca... [more]
A0A835Z0V0_9STRA4.250e-655.56PNPLA domain-containing protein n=1 Tax=Tribonema ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig108325contigH-elongata_contig108325:35..766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue1.3e-11
Seed eggNOG ortholog2880.D8LK47
KEGG rclassRC00078
KEGG koko:K00974
KEGG ReactionR09382,R09383,R09384,R09386
KEGG Pathwayko03013,map03013
EggNOG free text desc.CTP:tRNA cytidylyltransferase activity
EggNOG OGsCOG0617@1,KOG2159@2759
EC2.7.7.72
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Exons1
Model size732
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig108325.679.1prot_H-elongata_contig108325.679.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig108325 111..428 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929611.6509242-UTR-H-elongata_contig108325:34..1101622929611.6509242-UTR-H-elongata_contig108325:34..110Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig108325 35..110 +
1691679091.0161636-UTR-H-elongata_contig108325:34..1101691679091.0161636-UTR-H-elongata_contig108325:34..110Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig108325 35..110 +
1622929611.7841876-UTR-H-elongata_contig108325:428..7661622929611.7841876-UTR-H-elongata_contig108325:428..766Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig108325 429..766 +
1691679091.0385816-UTR-H-elongata_contig108325:428..7661691679091.0385816-UTR-H-elongata_contig108325:428..766Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig108325 429..766 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929611.6680312-CDS-H-elongata_contig108325:110..4281622929611.6680312-CDS-H-elongata_contig108325:110..428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108325 111..428 +
1691679091.0290453-CDS-H-elongata_contig108325:110..4281691679091.0290453-CDS-H-elongata_contig108325:110..428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108325 111..428 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig108325.679.1

>prot_H-elongata_contig108325.679.1 ID=prot_H-elongata_contig108325.679.1|Name=mRNA_H-elongata_contig108325.679.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
MTEPAVATETRDRSSKRQRISNIQHMAASPIKHVHPLGDRQPRGVIRGSN
RFSSDLTMDISNSLTPTEAQVLGLMMEAVKHAESQTVVRIAGGWVRDKLL
GLQVK*
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mRNA from alignment at H-elongata_contig108325:35..766+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig108325.679.1 ID=mRNA_H-elongata_contig108325.679.1|Name=mRNA_H-elongata_contig108325.679.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=732bp|location=Sequence derived from alignment at H-elongata_contig108325:35..766+ (Himanthalia elongata Himel1 dioecious)
ACGGGATTCGCTTGGTTGTATGGGTTTTCTTTAGCTGGTCAGGTCTGTTG
CAATCTAGAAACCCGCCTCAGCGTTTATGACGGAGCCAGCAGTAGCTACT
GAGACGCGTGATCGTTCATCCAAACGGCAGCGTATCTCCAACATACAACA
CATGGCGGCTTCGCCAATCAAGCATGTGCACCCGCTCGGAGACCGACAAC
CGCGAGGTGTCATCAGGGGTAGCAATCGATTTTCTAGCGATTTAACTATG
GACATATCGAACAGCCTCACGCCGACCGAAGCTCAAGTTCTCGGCTTGAT
GATGGAGGCAGTCAAGCACGCGGAGTCGCAGACGGTTGTGCGGATCGCAG
GCGGCTGGGTACGAGATAAGCTCTTGGGGTTACAGGTAAAATAGAGTTTC
GAGCAGGATAGGGGAGAACTGGTGTTGTGAGATCCAGCCGTACGAGTCGC
CCGGTCGCCCAATTGGTTCAGTTGGTAACCTCGAAACCTTCTGACATTGG
GATGTGAGTTCGAATCTCGGCGCAGTCACGCAAACTGGGATTTTGAATTT
TTCTAACATAATGCCCAACAAGTGGAGAACGGTTATACGATTATTTCGTG
GGTACCCCAAAAATTCGACTTCACGGTCGACGACCTTGGGGCGTTGCGCC
CAGAGGTGGGACAGCGGGGACAGGAGGGAGAATGGTAGCGATAGTCCGGC
ACGGTTGCGTAAGCAACGCGAGTAGGATAGGC
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Coding sequence (CDS) from alignment at H-elongata_contig108325:35..766+

>mRNA_H-elongata_contig108325.679.1 ID=mRNA_H-elongata_contig108325.679.1|Name=mRNA_H-elongata_contig108325.679.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig108325:35..766+ (Himanthalia elongata Himel1 dioecious)
ATGACGGAGCCAGCAGTAGCTACTGAGACGCGTGATCGTTCATCCAAACG
GCAGCGTATCTCCAACATACAACACATGGCGGCTTCGCCAATCAAGCATG
TGCACCCGCTCGGAGACCGACAACCGCGAGGTGTCATCAGGGGTAGCAAT
CGATTTTCTAGCGATTTAACTATGGACATATCGAACAGCCTCACGCCGAC
CGAAGCTCAAGTTCTCGGCTTGATGATGGAGGCAGTCAAGCACGCGGAGT
CGCAGACGGTTGTGCGGATCGCAGGCGGCTGGGTACGAGATAAGCTCTTG
GGGTTACAGGTAAAATAGATGACGGAGCCAGCAGTAGCTACTGAGACGCG
TGATCGTTCATCCAAACGGCAGCGTATCTCCAACATACAACACATGGCGG
CTTCGCCAATCAAGCATGTGCACCCGCTCGGAGACCGACAACCGCGAGGT
GTCATCAGGGGTAGCAATCGATTTTCTAGCGATTTAACTATGGACATATC
GAACAGCCTCACGCCGACCGAAGCTCAAGTTCTCGGCTTGATGATGGAGG
CAGTCAAGCACGCGGAGTCGCAGACGGTTGTGCGGATCGCAGGCGGCTGG
GTACGAGATAAGCTCTTGGGGTTACAGGTAAAATAG
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