prot_H-elongata_contig108310.678.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig108310.678.1
Unique Nameprot_H-elongata_contig108310.678.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length40
Homology
BLAST of mRNA_H-elongata_contig108310.678.1 vs. uniprot
Match: D7FK97_ECTSI (Zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK97_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 4.340e-8
Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = 0
Query:    8 KRLCSFYLKDRCRKGDACTFSHDVERKH 35
            KRLC+FYLK RC KG+ACTFSHDVERK+
Sbjct:  302 KRLCTFYLKGRCDKGEACTFSHDVERKN 329          
BLAST of mRNA_H-elongata_contig108310.678.1 vs. uniprot
Match: A0A6H5JLR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLR5_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 4.340e-8
Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = 0
Query:    8 KRLCSFYLKDRCRKGDACTFSHDVERKH 35
            KRLC+FYLK RC KG+ACTFSHDVERK+
Sbjct:  285 KRLCTFYLKGRCDKGEACTFSHDVERKN 312          
BLAST of mRNA_H-elongata_contig108310.678.1 vs. uniprot
Match: R4XL21_TAPDE (C3H1-type domain-containing protein n=1 Tax=Taphrina deformans (strain PYCC 5710 / ATCC 11124 / CBS 356.35 / IMI 108563 / JCM 9778 / NBRC 8474) TaxID=1097556 RepID=R4XL21_TAPDE)

HSP 1 Score: 48.1 bits (113), Expect = 3.130e-5
Identity = 18/32 (56.25%), Postives = 23/32 (71.88%), Query Frame = 0
Query:    6 RPKRLCSFYLKDRCRKGDACTFSHDVERKHCR 37
            RPKR C ++ + RC +GDACT+SHDV R   R
Sbjct:  280 RPKRPCKYFRQGRCSRGDACTYSHDVNRSEAR 311          
BLAST of mRNA_H-elongata_contig108310.678.1 vs. uniprot
Match: S7W9U8_SPRLO (Zinc finger protein n=1 Tax=Spraguea lophii (strain 42_110) TaxID=1358809 RepID=S7W9U8_SPRLO)

HSP 1 Score: 45.1 bits (105), Expect = 7.870e-5
Identity = 18/38 (47.37%), Postives = 27/38 (71.05%), Query Frame = 0
Query:    1 ETTRDRPKR-LCSFYLKDRCRKGDACTFSHDVERKHCR 37
            E T+ R K+ LC F++   C +GDACT+SHD+E+  C+
Sbjct:   33 EITKPRIKKELCRFFINKACNRGDACTYSHDIEKFLCK 70          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108310.678.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FK97_ECTSI4.340e-882.14Zinc finger protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5JLR5_9PHAE4.340e-882.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
R4XL21_TAPDE3.130e-556.25C3H1-type domain-containing protein n=1 Tax=Taphri... [more]
S7W9U8_SPRLO7.870e-547.37Zinc finger protein n=1 Tax=Spraguea lophii (strai... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 6..31
e-value: 2.9E-4
score: 30.2
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 5..32
score: 15.338
NoneNo IPR availableGENE3D4.10.1000.10coord: 1..39
e-value: 5.8E-8
score: 34.6
NoneNo IPR availablePFAMPF18345zf_CCCH_4coord: 11..29
e-value: 2.2E-7
score: 30.7
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 5..30

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig108310contigH-elongata_contig108310:444..563 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig108310.678.1mRNA_H-elongata_contig108310.678.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig108310 444..563 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig108310.678.1 ID=prot_H-elongata_contig108310.678.1|Name=mRNA_H-elongata_contig108310.678.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=40bp
ETTRDRPKRLCSFYLKDRCRKGDACTFSHDVERKHCRWA*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR036855Znf_CCCH_sf