mRNA_H-elongata_contig108291.676.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig108291.676.1
Unique NamemRNA_H-elongata_contig108291.676.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig108291.676.1 vs. uniprot
Match: D7FYI3_ECTSI (Hsp90 chaperone protein kinase-targeting subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYI3_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 6.570e-22
Identity = 47/68 (69.12%), Postives = 56/68 (82.35%), Query Frame = 1 
Query:    1 ERLGPGGLDPVEVFSTLPAAMQEAFETKDMEMLKKALLDMTPAEQKYNMKRCQDSGLWVAGAGGSTRV 204
            ER+GPGGLDP+EVF TLP  MQ AF+ KD  ML++ALL++T  E+KY+MKR  DSGLWV GAGGSTRV
Sbjct:  322 ERMGPGGLDPLEVFPTLPEKMQIAFDQKDTPMLQEALLELTDEERKYHMKRVVDSGLWVPGAGGSTRV 389
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BLAST of mRNA_H-elongata_contig108291.676.1 vs. uniprot
Match: A0A7S2SRH6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRH6_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.280e-21
Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:    1 ERLGPGGLDPVEVFSTLPAAMQEAFETKDMEMLKKALLDMTPAEQKYNMKRCQDSGLWVAG 183
            ER+GPGGLDPVEVF TLP A+QEAFE++D E L+ AL  M   E +Y+MKRC+DSGLWV+G
Sbjct:   77 ERIGPGGLDPVEVFDTLPKALQEAFESQDTEKLRAALTSMPAEEARYHMKRCEDSGLWVSG 137
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BLAST of mRNA_H-elongata_contig108291.676.1 vs. uniprot
Match: A0A8J4SIJ3_9TREM (Hsp90 co-chaperone Cdc37 n=1 Tax=Paragonimus heterotremus TaxID=100268 RepID=A0A8J4SIJ3_9TREM)

HSP 1 Score: 87.0 bits (214), Expect = 8.010e-20
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    1 ERLGPGGLDPVEVFSTLPAAMQEAFETKDMEMLKKALLDMTPAEQKYNMKRCQDSGLWV 177
            +RLGPGGLDP+EVF +LPAA+QE FE KD+E LK  L  M P + +Y+MKRC DSGLWV
Sbjct:   44 KRLGPGGLDPIEVFDSLPAALQECFEKKDVERLKTVLCKMDPKDAEYHMKRCVDSGLWV 102
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BLAST of mRNA_H-elongata_contig108291.676.1 vs. uniprot
Match: A0A183K8S6_9TREM (CDC37_C domain-containing protein n=2 Tax=Schistosoma curassoni TaxID=6186 RepID=A0A183K8S6_9TREM)

HSP 1 Score: 87.0 bits (214), Expect = 9.330e-20
Identity = 41/75 (54.67%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:    1 ERLGPGGLDPVEVFSTLPAAMQEAFETKDMEMLKKALLDMTPAEQKYNMKRCQDSGLWVAGAGGSTRVGGDAEAN 225
            +RLGPGGLDPVEVF +LP  +QE FE KD+E+LK  L  M P + +Y+MKRC DSGLWV  A       G++ +N
Sbjct:   50 KRLGPGGLDPVEVFESLPTNLQECFEKKDVELLKTVLCSMDPQQAEYHMKRCVDSGLWVDNARDQQEEDGESSSN 124
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BLAST of mRNA_H-elongata_contig108291.676.1 vs. uniprot
Match: B7QFI7_IXOSC (Hsp90 chaperone protein kinase-targeting subunit n=5 Tax=Ixodes TaxID=6944 RepID=B7QFI7_IXOSC)

HSP 1 Score: 90.1 bits (222), Expect = 2.490e-19
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 1 
Query:    1 ERLGPGGLDPVEVFSTLPAAMQEAFETKDMEMLKKALLDMTPAEQKYNMKRCQDSGLWVAGAGGSTRVGGDAEANDDDESA 243
            ERLGPGGLDPVEVF TLP  +Q+ FE++D++MLK+A+  M   E +Y+MKRC DSGLWV  A   T   GDA   D  E A
Sbjct:  281 ERLGPGGLDPVEVFETLPEVLQKCFESRDLDMLKEAIAAMPEEEARYHMKRCVDSGLWVPDA--KTAATGDARPEDGGEDA 359
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BLAST of mRNA_H-elongata_contig108291.676.1 vs. uniprot
Match: UPI001455A1CC (hsp90 co-chaperone Cdc37-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455A1CC)

HSP 1 Score: 89.7 bits (221), Expect = 3.990e-19
Identity = 42/72 (58.33%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:    4 RLGPGGLDPVEVFSTLPAAMQEAFETKDMEMLKKALLDMTPAEQKYNMKRCQDSGLWVAGAGGSTRVGGDAE 219
            RLGPGGLDPVEVF TLP  +Q  FE+KD+ +L+K + DM P+E +++MKRC DSGLWV G G S    G+ E
Sbjct:  290 RLGPGGLDPVEVFETLPKELQACFESKDISLLQKMIGDMEPSEAEHHMKRCVDSGLWVPGGGASEGKAGEQE 361
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BLAST of mRNA_H-elongata_contig108291.676.1 vs. uniprot
Match: A0A7S4NF12_9STRA (Hsp90 chaperone protein kinase-targeting subunit n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NF12_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 5.100e-19
Identity = 40/61 (65.57%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 ERLGPGGLDPVEVFSTLPAAMQEAFETKDMEMLKKALLDMTPAEQKYNMKRCQDSGLWVAG 183
            ERLGPGGLDPVEVF +LP +MQEAFE++DME LK+A++ + P + +Y+MKRC DSGLW  G
Sbjct:  451 ERLGPGGLDPVEVFESLPLSMQEAFESRDMENLKEAIMGLEPGQAEYHMKRCVDSGLWNEG 511
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BLAST of mRNA_H-elongata_contig108291.676.1 vs. uniprot
Match: G7YL79_CLOSI (Hsp90 chaperone protein kinase-targeting subunit n=4 Tax=Opisthorchiidae TaxID=6196 RepID=G7YL79_CLOSI)

HSP 1 Score: 89.4 bits (220), Expect = 5.900e-19
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    1 ERLGPGGLDPVEVFSTLPAAMQEAFETKDMEMLKKALLDMTPAEQKYNMKRCQDSGLWV 177
            +RLGPGGLDPVEVF TLP A+QE FE KD+EMLK  L  M P + +Y+MKRC DSGLWV
Sbjct:  290 KRLGPGGLDPVEVFDTLPPALQECFEKKDVEMLKTVLCGMDPKDAEYHMKRCVDSGLWV 348
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BLAST of mRNA_H-elongata_contig108291.676.1 vs. uniprot
Match: A0A7S2A196_TRICV (Hsp90 chaperone protein kinase-targeting subunit n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A196_TRICV)

HSP 1 Score: 89.4 bits (220), Expect = 7.990e-19
Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:    1 ERLGPGGLDPVEVFSTLPAAMQEAFETKDMEMLKKALLDMTPAEQKYNMKRCQDSGLWVAG 183
            ERLGPGGLDPVEVF +LP AMQEAFE++D E LK+AL+ M P + +++MKRC DSGLW  G
Sbjct:  384 ERLGPGGLDPVEVFESLPVAMQEAFESRDTEKLKEALMAMEPGQAEHHMKRCVDSGLWNQG 444
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BLAST of mRNA_H-elongata_contig108291.676.1 vs. uniprot
Match: A0A074ZTU0_9TREM (Hsp90 chaperone protein kinase-targeting subunit n=2 Tax=Opisthorchis TaxID=6197 RepID=A0A074ZTU0_9TREM)

HSP 1 Score: 89.4 bits (220), Expect = 8.880e-19
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    1 ERLGPGGLDPVEVFSTLPAAMQEAFETKDMEMLKKALLDMTPAEQKYNMKRCQDSGLWV 177
            +RLGPGGLDPVEVF TLP A+QE FE KD+EMLK  L  M P + +Y+MKRC DSGLWV
Sbjct:  377 KRLGPGGLDPVEVFDTLPPALQECFEKKDVEMLKTVLCGMDPKDAEYHMKRCVDSGLWV 435
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108291.676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYI3_ECTSI6.570e-2269.12Hsp90 chaperone protein kinase-targeting subunit n... [more]
A0A7S2SRH6_9STRA2.280e-2167.21Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J4SIJ3_9TREM8.010e-2066.10Hsp90 co-chaperone Cdc37 n=1 Tax=Paragonimus heter... [more]
A0A183K8S6_9TREM9.330e-2054.67CDC37_C domain-containing protein n=2 Tax=Schistos... [more]
B7QFI7_IXOSC2.490e-1956.79Hsp90 chaperone protein kinase-targeting subunit n... [more]
UPI001455A1CC3.990e-1958.33hsp90 co-chaperone Cdc37-like n=1 Tax=Asterias rub... [more]
A0A7S4NF12_9STRA5.100e-1965.57Hsp90 chaperone protein kinase-targeting subunit n... [more]
G7YL79_CLOSI5.900e-1969.49Hsp90 chaperone protein kinase-targeting subunit n... [more]
A0A7S2A196_TRICV7.990e-1967.21Hsp90 chaperone protein kinase-targeting subunit n... [more]
A0A074ZTU0_9TREM8.880e-1969.49Hsp90 chaperone protein kinase-targeting subunit n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig108291contigH-elongata_contig108291:1337..2119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.0
Seed ortholog evalue1.3e-18
Seed eggNOG ortholog2880.D7FYI3
Preferred nameCDC37
KEGG koko:K09554
KEGG Pathwayko04151,map04151
GOsGO:0000079,GO:0000161,GO:0000165,GO:0000226,GO:0000793,GO:0001726,GO:0001932,GO:0001934,GO:0001959,GO:0002576,GO:0002682,GO:0003674,GO:0003824,GO:0004672,GO:0004713,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0005886,GO:0006457,GO:0006464,GO:0006468,GO:0006605,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006887,GO:0006950,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008022,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009987,GO:0010468,GO:0010506,GO:0010508,GO:0010562,GO:0010604,GO:0010608,GO:0010638,GO:0010646,GO:0010821,GO:0010822,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016239,GO:0016241,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018108,GO:0018193,GO:0018212,GO:0019207,GO:0019209,GO:0019220,GO:0019222,GO:0019538,GO:0019887,GO:0019899,GO:0019900,GO:0019901,GO:0022402,GO:0022607,GO:0023014,GO:0023051,GO:0023052,GO:0030141,GO:0030234,GO:0030295,GO:0030296,GO:0030474,GO:0031023,GO:0031072,GO:0031089,GO:0031098,GO:0031252,GO:0031253,GO:0031256,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031347,GO:0031399,GO:0031401,GO:0031410,GO:0031435,GO:0031647,GO:0031974,GO:0031982,GO:0031983,GO:0032147,GO:0032268,GO:0032270,GO:0032587,GO:0032872,GO:0032940,GO:0032991,GO:0033036,GO:0033043,GO:0033554,GO:0033674,GO:0034613,GO:0034774,GO:0035556,GO:0035690,GO:0036211,GO:0038127,GO:0038128,GO:0042221,GO:0042325,GO:0042327,GO:0042493,GO:0042827,GO:0042886,GO:0042995,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043408,GO:0043412,GO:0043422,GO:0043549,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0045055,GO:0045088,GO:0045184,GO:0045859,GO:0045860,GO:0045937,GO:0046903,GO:0046907,GO:0048518,GO:0048522,GO:0048583,GO:0050730,GO:0050731,GO:0050776,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051082,GO:0051087,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051300,GO:0051338,GO:0051347,GO:0051403,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0051879,GO:0060205,GO:0060255,GO:0060330,GO:0060334,GO:0060338,GO:0060759,GO:0061077,GO:0061097,GO:0061098,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070302,GO:0070727,GO:0070887,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071900,GO:0071944,GO:0072686,GO:0080090,GO:0080134,GO:0080135,GO:0097110,GO:0097708,GO:0098590,GO:0098772,GO:0098779,GO:0098780,GO:0099503,GO:0101031,GO:0120025,GO:0120038,GO:0140096,GO:1901524,GO:1901526,GO:1901564,GO:1902531,GO:1903146,GO:1903599,GO:1904029,GO:1904923,GO:1904925,GO:1990565
EggNOG free text desc.chaperone binding
EggNOG OGsKOG2260@1,KOG2260@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko03029,ko03110
Hectar predicted targeting categoryother localisation
Exons2
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929611.431166-CDS-H-elongata_contig108291:1336..14731622929611.431166-CDS-H-elongata_contig108291:1336..1473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108291 1337..1473 +
1691679090.9534197-CDS-H-elongata_contig108291:1336..14731691679090.9534197-CDS-H-elongata_contig108291:1336..1473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108291 1337..1473 +
1622929611.4469628-CDS-H-elongata_contig108291:1965..21191622929611.4469628-CDS-H-elongata_contig108291:1965..2119Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108291 1966..2119 +
1691679090.9667509-CDS-H-elongata_contig108291:1965..21191691679090.9667509-CDS-H-elongata_contig108291:1965..2119Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108291 1966..2119 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig108291.676.1prot_H-elongata_contig108291.676.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig108291 1337..2119 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig108291.676.1

>prot_H-elongata_contig108291.676.1 ID=prot_H-elongata_contig108291.676.1|Name=mRNA_H-elongata_contig108291.676.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
ERLGPGGLDPVEVFSTLPAAMQEAFETKDMEMLKKALLDMTPAEQKYNMK
RCQDSGLWVAGAGGSTRVGGDAEANDDDESAPPEDGTKPGQAGGEST
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mRNA from alignment at H-elongata_contig108291:1337..2119+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig108291.676.1 ID=mRNA_H-elongata_contig108291.676.1|Name=mRNA_H-elongata_contig108291.676.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=783bp|location=Sequence derived from alignment at H-elongata_contig108291:1337..2119+ (Himanthalia elongata Himel1 dioecious)
GAACGCTTGGGACCCGGAGGGCTCGACCCTGTCGAGGTGTTTTCCACCCT
TCCCGCGGCGATGCAGGAGGCCTTTGAGACGAAGGACATGGAAATGTTGA
AGAAGGCGCTTCTTGACATGACCCCGGCCGAACAAAAGTGAGCCGTGCGA
AGCACCAGACACATACAGACACAACTACGTATACATCTATGTATAATTCG
ATTGTAACGTTCAATAGAGCTGCAGTATTTTTCTCCACCAAGGACGTAAG
AGTAGGGTGGGATGGAATGAAATGGGGAAGCTTGCACTCTAGGGCGTTGT
GACCGTCGCGTTGTGTTTTCATCAAAATTAGAGCAGGTTGATTTGCCCCA
CCGGCGTGGGGTTTAGGCGCTGCACCTTTGGAAGCGAAACAAAACGGATG
CGTACGCCTGTCTTACCCCCCCCGTCCCCGTCCCTAATATATCTCTTCGC
TATATATATCCTCCTCCAGCTGTTGCTTTTACTGTTCTCTCATTGTTGTA
TTCGCTAGTTTCTTCCCTCAGTCCCCCGCTTGCCGCCACCGATGTGAGAG
GAAGACAAAAATCCCTCCATTCAATCACTTTTGGCTGCCTCTTCTGTCTG
CCTGTGGCTGTCTTCGTGCTTCTAAAAAGATATAACATGAAGCGCTGCCA
GGACTCCGGCTTGTGGGTCGCCGGCGCGGGAGGTAGCACCAGAGTTGGAG
GCGACGCCGAGGCAAATGATGATGACGAGAGCGCGCCGCCTGAGGATGGC
ACGAAGCCGGGGCAAGCAGGGGGGGAGTCGACG
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Coding sequence (CDS) from alignment at H-elongata_contig108291:1337..2119+

>mRNA_H-elongata_contig108291.676.1 ID=mRNA_H-elongata_contig108291.676.1|Name=mRNA_H-elongata_contig108291.676.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig108291:1337..2119+ (Himanthalia elongata Himel1 dioecious)
GAACGCTTGGGACCCGGAGGGCTCGACCCTGTCGAGGTGTTTTCCACCCT
TCCCGCGGCGATGCAGGAGGCCTTTGAGACGAAGGACATGGAAATGTTGA
AGAAGGCGCTTCTTGACATGACCCCGGCCGAACAAAAGAACGCTTGGGAC
CCGGAGGGCTCGACCCTGTCGAGGTGTTTTCCACCCTTCCCGCGGCGATG
CAGGAGGCCTTTGAGACGAAGGACATGGAAATGTTGAAGAAGGCGCTTCT
TGACATGACCCCGGCCGAACAAAAATATAACATGAAGCGCTGCCAGGACT
CCGGCTTGTGGGTCGCCGGCGCGGGAGGTAGCACCAGAGTTGGAGGCGAC
GCCGAGGCAAATGATGATGACGAGAGCGCGCCGCCTGAGGATGGCACGAA
GCCGGGGCAAGCAGGGGGGGAGTCGACGATATAACATGAAGCGCTGCCAG
GACTCCGGCTTGTGGGTCGCCGGCGCGGGAGGTAGCACCAGAGTTGGAGG
CGACGCCGAGGCAAATGATGATGACGAGAGCGCGCCGCCTGAGGATGGCA
CGAAGCCGGGGCAAGCAGGGGGGGAGTCGACG
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