mRNA_H-elongata_contig108246.670.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig108246.670.1
Unique NamemRNA_H-elongata_contig108246.670.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig108246.670.1 vs. uniprot
Match: D8LNS4_ECTSI (BAX inhibitor motif-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNS4_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 8.260e-19
Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:    1 GSLTAYAFRTNPKHELTQFGAGLYSAGNALAMFCLMKLLFFRRH 132
            GSLTAYAFRTNPKHELTQFGAGLYSAGNAL++FCLMK+ FFR H
Sbjct:  264 GSLTAYAFRTNPKHELTQFGAGLYSAGNALSLFCLMKIFFFRGH 307
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108246.670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNS4_ECTSI8.260e-1988.64BAX inhibitor motif-containing protein n=2 Tax=Ect... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig108246contigH-elongata_contig108246:2..133 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue8.8e-15
Seed eggNOG ortholog2880.D8LNS4
KEGG koko:K06890
GOsGO:0000322,GO:0000323,GO:0000324,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005783,GO:0006915,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008150,GO:0008219,GO:0009987,GO:0010033,GO:0012501,GO:0012505,GO:0016020,GO:0016021,GO:0019722,GO:0019932,GO:0023052,GO:0030968,GO:0031224,GO:0033554,GO:0034620,GO:0034976,GO:0035556,GO:0035966,GO:0035967,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070887,GO:0071310
EggNOG free text desc.negative regulation of Fas signaling pathway
EggNOG OGsCOG0670@1,KOG2322@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionTruncated paralogue of Bax-inhibitor domain containing gene Esi0005_0161; likely pseudogene.
Ec32 orthologEc-08_006040.1
Exons1
Model size132
Cds size132
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929610.8356624-CDS-H-elongata_contig108246:1..1331622929610.8356624-CDS-H-elongata_contig108246:1..133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108246 2..133 -
1691679090.6910872-CDS-H-elongata_contig108246:1..1331691679090.6910872-CDS-H-elongata_contig108246:1..133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108246 2..133 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig108246.670.1prot_H-elongata_contig108246.670.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig108246 2..133 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig108246.670.1

>prot_H-elongata_contig108246.670.1 ID=prot_H-elongata_contig108246.670.1|Name=mRNA_H-elongata_contig108246.670.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
GSLTAYAFRTNPKHELTQFGAGLYSAGNALAMFCLMKLLFFRRH
back to top

mRNA from alignment at H-elongata_contig108246:2..133-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig108246.670.1 ID=mRNA_H-elongata_contig108246.670.1|Name=mRNA_H-elongata_contig108246.670.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at H-elongata_contig108246:2..133- (Himanthalia elongata Himel1 dioecious)
GGCTCTCTGACGGCGTACGCCTTCCGGACGAACCCCAAGCACGAGCTGAC
GCAATTCGGCGCCGGGTTATACTCCGCCGGCAACGCCTTGGCCATGTTCT
GCCTGATGAAGCTTCTGTTCTTCCGCCGTCAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig108246:2..133-

>mRNA_H-elongata_contig108246.670.1 ID=mRNA_H-elongata_contig108246.670.1|Name=mRNA_H-elongata_contig108246.670.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig108246:2..133- (Himanthalia elongata Himel1 dioecious)
GGCTCTCTGACGGCGTACGCCTTCCGGACGAACCCCAAGCACGAGCTGAC
GCAATTCGGCGCCGGGTTATACTCCGCCGGCAACGCCTTGGCCATGTTCT
GCCTGATGAAGCTTCTGTTCTTCCGCCGTCACGGCTCTCTGACGGCGTAC
GCCTTCCGGACGAACCCCAAGCACGAGCTGACGCAATTCGGCGCCGGGTT
ATACTCCGCCGGCAACGCCTTGGCCATGTTCTGCCTGATGAAGCTTCTGT
TCTTCCGCCGTCAC
back to top