mRNA_H-elongata_contig10818.665.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10818.665.1
Unique NamemRNA_H-elongata_contig10818.665.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig10818.665.1 vs. uniprot
Match: D7G8D4_ECTSI (C-CAP/cofactor C-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D4_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 7.690e-33
Identity = 72/115 (62.61%), Postives = 81/115 (70.43%), Query Frame = 1 
Query:    1 QHLRAAGLTTPNLWFGVYDFNDEAKTGKNWCLIDPEDED-ESWRPLNDASEVAIPRTLPGSISLPSKQTGFGGGEESAIGGGNRESTTMAFSFSTGALEATALAKAHHHAKGGYA 342
            +HLR AGL TPNLWFGVYDFNDEAKTG NW L+  E++  E WRPLND SEVAIP T PGS+ LPSK+TG   GE S  G     +TTMAFS +T A EA A  +A HHA G  A
Sbjct:  141 EHLREAGLMTPNLWFGVYDFNDEAKTGDNWRLLAEEEQGGEPWRPLNDNSEVAIPATAPGSVPLPSKRTGGRTGETSE-GPSATTTTTMAFSLATSATEAEAAVQAGHHAAGAVA 254
[Close]
BLAST of mRNA_H-elongata_contig10818.665.1 vs. uniprot
Match: A0A6H5K9W1_9PHAE (C-CAP/cofactor C-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9W1_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.070e-25
Identity = 55/77 (71.43%), Postives = 59/77 (76.62%), Query Frame = 1 
Query:    1 QHLRAAGLTTPNLWFGVYDFNDEAKTGKNWCLIDP-EDEDESWRPLNDASEVAIPRTLPGSISLPSKQTGFGGGEES 228
            +HLR AGLTTPNLWFGVYDFNDEAKTG NW L+D  E   E WRPLND SEV IP T PGS+ LPSK+TG   GE S
Sbjct:   82 EHLREAGLTTPNLWFGVYDFNDEAKTGDNWRLLDKGEQGGEPWRPLNDNSEVVIPVTAPGSVPLPSKRTGGRTGETS 158
[Close]
BLAST of mRNA_H-elongata_contig10818.665.1 vs. uniprot
Match: A0A7S2K3P5_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K3P5_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.400e-11
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:    1 QHLRAAGLTTP-NLWFGVYDFNDEAKTGKNWCLIDPEDEDESWRPLNDASEVAIPRTLPGSISLPSKQ 201
            Q + AA L    NLWF VYDFND+ +TG NW  ++  +ED  W PLND ++   PR  PG+I   ++Q
Sbjct:  143 QAMEAASLNPERNLWFAVYDFNDDKQTGNNWRYLNASEEDPLWTPLNDGAKTCCPRVKPGAIKTQTEQ 210
[Close]
BLAST of mRNA_H-elongata_contig10818.665.1 vs. uniprot
Match: A0A7S2VWT6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VWT6_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.050e-10
Identity = 51/109 (46.79%), Postives = 61/109 (55.96%), Query Frame = 1 
Query:   10 RAAGLTTPNLWFGVYDFNDEAKTGKNWCLIDPEDEDES-WRPLNDASEVAIPRTLPGSISLPSKQ-TGFGGG----EESAIGGGN---RESTTMAFSFSTGALEATALA 309
            RA  +   NLWFGV+DFNDEAKTG NW L++ E E E  W PL +  E   P    GSI+LPS+   G GGG    + S I GG         M+FSF T +L   ALA
Sbjct:  153 RAGLIPEHNLWFGVFDFNDEAKTGVNWRLMEDEKEWEPCWCPLGEF-ENCCPNVKKGSIALPSQSGDGMGGGVTLPKASDISGGAVGVGSGGMMSFSFDT-SLHDAALA 259
[Close]
BLAST of mRNA_H-elongata_contig10818.665.1 vs. uniprot
Match: F0YC98_AURAN (C-CAP/cofactor C-like domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC98_AURAN)

HSP 1 Score: 62.8 bits (151), Expect = 2.940e-9
Identity = 43/100 (43.00%), Postives = 55/100 (55.00%), Query Frame = 1 
Query:    4 HLRAAGLTTP-NLWFGVYDFNDEAKTGKNWCLIDPEDEDESWRPLNDASEVAIPRTLPGS-ISLPSKQTGFGGGEESAIGGGNRESTTMAFSFSTGALEA 297
            H+ AA L    NLW+G++DFNDEAKTGKNW  +   ++ E W P   A +V    T PGS  SLPS+  G           GN     M+F F+T +LEA
Sbjct:  150 HMAAANLDPAINLWWGLFDFNDEAKTGKNWSYVPDAEQAEPWFPNGGADQVCA-ITAPGSRSSLPSQNGG---------NFGNSSGGMMSFDFNT-SLEA 238
[Close]
BLAST of mRNA_H-elongata_contig10818.665.1 vs. uniprot
Match: A0A8J2T3H8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T3H8_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 5.970e-8
Identity = 34/74 (45.95%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:    1 QHLRAAGLTTP-NLWFGVYDFNDEAKTGKNWCLIDPEDEDESWRPLNDASEVAIPRTLPGSISLPSKQTGFGGG 219
            Q +R+  L    N W+G++DFNDEAKTGKN+ +++   E   W PL +AS+V   +T P S +LPS  T  GGG
Sbjct:  145 QCMRSVNLDPSINFWWGIFDFNDEAKTGKNFKVVNVPME--PWWPLGEASQVCE-QTAPNSATLPSTLTDDGGG 215
[Close]
BLAST of mRNA_H-elongata_contig10818.665.1 vs. uniprot
Match: A0A7S4E638_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E638_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 5.980e-8
Identity = 34/74 (45.95%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:    1 QHLRAAGLTTP-NLWFGVYDFNDEAKTGKNWCLIDPEDEDESWRPLNDASEVAIPRTLPGSISLPSKQTGFGGG 219
            Q +R+  L    N W+G++DFNDEAKTGKN+ +++   E   W PL +AS+V   +T P S +LPS  T  GGG
Sbjct:  184 QCMRSVNLDPSINFWWGIFDFNDEAKTGKNFKVVNVPME--PWWPLGEASQVCE-QTAPNSATLPSTLTDDGGG 254
[Close]
BLAST of mRNA_H-elongata_contig10818.665.1 vs. uniprot
Match: A0A836CLR1_9STRA (Tubulin binding cofactor C-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLR1_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 9.540e-8
Identity = 20/33 (60.61%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:    1 QHLRAAGLTTPNLWFGVYDFNDEAKTGKNWCLI 99
             HL+A+ L TP++W+ ++DFNDEAKTGKNW L+
Sbjct:  143 SHLQASNLMTPSVWYAIFDFNDEAKTGKNWSLV 175
[Close]
BLAST of mRNA_H-elongata_contig10818.665.1 vs. uniprot
Match: A0A7S2SUK9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUK9_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.980e-6
Identity = 25/54 (46.30%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:    4 HLRAAGLTTP-NLWFGVYDFNDEAKTGKNWCLIDPEDEDESWRPLNDASEVAIP 162
            H++ AGL    N W  V+DFNDEAKTGKNW ++     ++ W P  D +E A+P
Sbjct:  148 HMQQAGLDPRVNKWSMVFDFNDEAKTGKNWSVLRRAQYEDPWFPGGDVAEPAVP 201
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10818.665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G8D4_ECTSI7.690e-3362.61C-CAP/cofactor C-like domain-containing protein n=... [more]
A0A6H5K9W1_9PHAE1.070e-2571.43C-CAP/cofactor C-like domain-containing protein n=... [more]
A0A7S2K3P5_9STRA1.400e-1145.59Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7S2VWT6_9STRA3.050e-1046.79Hypothetical protein (Fragment) n=1 Tax=Triparma p... [more]
F0YC98_AURAN2.940e-943.00C-CAP/cofactor C-like domain-containing protein n=... [more]
A0A8J2T3H8_9STRA5.970e-845.95Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4E638_9STRA5.980e-845.95Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A836CLR1_9STRA9.540e-860.61Tubulin binding cofactor C-domain-containing prote... [more]
A0A7S2SUK9_9STRA5.980e-646.30Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10818contigH-elongata_contig10818:7029..7906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.0
Seed ortholog evalue4.3e-29
Seed eggNOG ortholog2880.D7G8D4
KEGG koko:K18272
EggNOG free text desc.post-chaperonin tubulin folding pathway
EggNOG OGsKOG2512@1,KOG2512@2759
Ec32 ortholog descriptionCyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal
Ec32 orthologEc-19_004040.1
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Hectar predicted targeting categoryother localisation
Exons3
Model size342
Cds size342
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10818.665.1prot_H-elongata_contig10818.665.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10818 7029..7906 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929610.0270395-CDS-H-elongata_contig10818:7028..71501622929610.0270395-CDS-H-elongata_contig10818:7028..7150Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10818 7029..7150 -
1691679090.4493563-CDS-H-elongata_contig10818:7028..71501691679090.4493563-CDS-H-elongata_contig10818:7028..7150Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10818 7029..7150 -
1622929610.0472229-CDS-H-elongata_contig10818:7204..73151622929610.0472229-CDS-H-elongata_contig10818:7204..7315Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10818 7205..7315 -
1691679090.4608235-CDS-H-elongata_contig10818:7204..73151691679090.4608235-CDS-H-elongata_contig10818:7204..7315Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10818 7205..7315 -
1622929610.063677-CDS-H-elongata_contig10818:7797..79061622929610.063677-CDS-H-elongata_contig10818:7797..7906Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10818 7798..7906 -
1691679090.4701033-CDS-H-elongata_contig10818:7797..79061691679090.4701033-CDS-H-elongata_contig10818:7797..7906Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10818 7798..7906 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10818.665.1

>prot_H-elongata_contig10818.665.1 ID=prot_H-elongata_contig10818.665.1|Name=mRNA_H-elongata_contig10818.665.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
QHLRAAGLTTPNLWFGVYDFNDEAKTGKNWCLIDPEDEDESWRPLNDASE
VAIPRTLPGSISLPSKQTGFGGGEESAIGGGNRESTTMAFSFSTGALEAT
ALAKAHHHAKGGYA
back to top

mRNA from alignment at H-elongata_contig10818:7029..7906-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10818.665.1 ID=mRNA_H-elongata_contig10818.665.1|Name=mRNA_H-elongata_contig10818.665.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=878bp|location=Sequence derived from alignment at H-elongata_contig10818:7029..7906- (Himanthalia elongata Himel1 dioecious)
CAGCACCTCCGAGCCGCCGGATTGACCACCCCGAATCTTTGGTTTGGGGT
GTATGACTTCAACGACGAAGCCAAGACGGGCAAGAACTGGTGCTTGATTG
ACCCGGAAGGTGCTCTGTCTGCCTGCAGGGTTAAAAAATAGTAATGAATA
AAATAATGGTAATAGCTCTTCGATGTTGCTTTGACGCGAAGCTCTCTAGA
CTGCTTCAAAGCGAGAGCGGTTCTTTTTTGTGCATATAAATAATACGTAG
TATATATTTAGTATGTATACACATCAAATTTTTTTATATATATATATATA
ATCTATAGATGATAGAGCTATAAATAATAGAGGCATAAATAAAATTTATG
ATAAATAAATAATATAGTACGTAGGTATATAAATAGTAGCGATATGGATA
ATGGAGATATAAATATATATATATTATAGGTATAAATAATAGAGATATAA
AAGTAGAGATATAAATAGCACGTCTACGTTAGATCGTCGATCGCTGCGTT
GCTTTCGTCTATCGATACCCCCAACTTTCTCTCTCTCTCTCTCTCTCTCT
CGCTCTCTTCCCTGGCGTAACCACTTTTTGAATCGAGGCAGACGAAGATG
AGTCTTGGCGGCCCCTCAACGATGCTTCCGAGGTGGCCATTCCAAGGACG
TTGCCAGGGTCGATCTCTCTGCCTAGTAAACAGACCGGTTTCGGTGGCGG
CGGTTGTTTTGTCATAGACAGAGGCGGTGCCGAGGTTGGTGGCGTTAGTG
GTCGAGAAGAATCAGCTATCGGAGGCGGGAATCGAGAATCGACGACGATG
GCGTTCTCTTTCTCAACTGGAGCTTTGGAAGCCACAGCCCTGGCGAAAGC
CCATCACCACGCCAAAGGAGGTTATGCT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig10818:7029..7906-

>mRNA_H-elongata_contig10818.665.1 ID=mRNA_H-elongata_contig10818.665.1|Name=mRNA_H-elongata_contig10818.665.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig10818:7029..7906- (Himanthalia elongata Himel1 dioecious)
CAGCACCTCCGAGCCGCCGGATTGACCACCCCGAATCTTTGGTTTGGGGT
GTATGACTTCAACGACGAAGCCAAGACGGGCAAGAACTGGTGCTTGATTG
ACCCGGAAGCAGCACCTCCGAGCCGCCGGATTGACCACCCCGAATCTTTG
GTTTGGGGTGTATGACTTCAACGACGAAGCCAAGACGGGCAAGAACTGGT
GCTTGATTGACCCGGAAGACGAAGATGAGTCTTGGCGGCCCCTCAACGAT
GCTTCCGAGGTGGCCATTCCAAGGACGTTGCCAGGGTCGATCTCTCTGCC
TAGTAAACAGACCGGTTTCGGTGGCGGCGACGAAGATGAGTCTTGGCGGC
CCCTCAACGATGCTTCCGAGGTGGCCATTCCAAGGACGTTGCCAGGGTCG
ATCTCTCTGCCTAGTAAACAGACCGGTTTCGGTGGCGGCGAAGAATCAGC
TATCGGAGGCGGGAATCGAGAATCGACGACGATGGCGTTCTCTTTCTCAA
CTGGAGCTTTGGAAGCCACAGCCCTGGCGAAAGCCCATCACCACGCCAAA
GGAGGTTATGCTAAGAATCAGCTATCGGAGGCGGGAATCGAGAATCGACG
ACGATGGCGTTCTCTTTCTCAACTGGAGCTTTGGAAGCCACAGCCCTGGC
GAAAGCCCATCACCACGCCAAAGGAGGTTATGCT
back to top