mRNA_H-elongata_contig108132.662.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig108132.662.1 vs. uniprot
Match: A0A2I4CWC1_9TELE (crooked neck-like protein 1 n=1 Tax=Austrofundulus limnaeus TaxID=52670 RepID=A0A2I4CWC1_9TELE) HSP 1 Score: 123 bits (308), Expect = 1.610e-34 Identity = 52/78 (66.67%), Postives = 65/78 (83.33%), Query Frame = 1
Query: 28 EMRSKFPNHARNVWDRAVALLPRVDQFWYKYSYMEEMLGNPAKARAIFERWMEWEPEDNAWSAYVKFEMRQEEPTKAR 261
EM+S+ NHARN+WDRA+ +LPRV+QFWYKY+YMEEMLGN A R +FERWMEWEPE+ AW +Y+ FE+R +E KAR
Sbjct: 2 EMKSRQVNHARNIWDRAITILPRVNQFWYKYTYMEEMLGNVAGCRQVFERWMEWEPEEQAWHSYINFELRYKEVDKAR 79
BLAST of mRNA_H-elongata_contig108132.662.1 vs. uniprot
Match: A0A2G9HXZ8_9LAMI (Cell cycle control protein (Crooked neck) n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9HXZ8_9LAMI) HSP 1 Score: 122 bits (306), Expect = 1.520e-30 Identity = 51/79 (64.56%), Postives = 64/79 (81.01%), Query Frame = 1
Query: 1 TVWLRYAEFEMRSKFPNHARNVWDRAVALLPRVDQFWYKYSYMEEMLGNPAKARAIFERWMEWEPEDNAWSAYVKFEMR 237
T+WL+YA+FEM++KF NHARN+WDRA LLP VDQ WYK +MEEMLGN A AR I+ERWM+W P+ W +Y+KFE+R
Sbjct: 100 TLWLKYADFEMKNKFVNHARNIWDRATELLPTVDQLWYKSIHMEEMLGNVAGARQIYERWMKWMPDPQGWLSYIKFELR 178
BLAST of mRNA_H-elongata_contig108132.662.1 vs. uniprot
Match: A0A183KDF0_9TREM (Uncharacterized protein n=1 Tax=Schistosoma curassoni TaxID=6186 RepID=A0A183KDF0_9TREM) HSP 1 Score: 120 bits (300), Expect = 8.710e-30 Identity = 53/78 (67.95%), Postives = 63/78 (80.77%), Query Frame = 1
Query: 28 EMRSKFPNHARNVWDRAVALLPRVDQFWYKYSYMEEMLGNPAKARAIFERWMEWEPEDNAWSAYVKFEMRQEEPTKAR 261
EMR K NHARN+WDRAV L+PR +QFWYKY+YMEE LGN A AR IFERWMEW+PE+ AW AY+ FE+R +E +AR
Sbjct: 2 EMRHKQVNHARNLWDRAVTLMPRANQFWYKYTYMEETLGNVAGARQIFERWMEWQPEEQAWHAYINFELRYKEMDRAR 79
BLAST of mRNA_H-elongata_contig108132.662.1 vs. uniprot
Match: UPI000719E0EE (crooked neck-like protein 1 n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719E0EE) HSP 1 Score: 117 bits (293), Expect = 8.980e-29 Identity = 48/72 (66.67%), Postives = 60/72 (83.33%), Query Frame = 1
Query: 31 MRSKFPNHARNVWDRAVALLPRVDQFWYKYSYMEEMLGNPAKARAIFERWMEWEPEDNAWSAYVKFEMRQEE 246
M++K NH RN+WDRA+ +LPR +QFWYKY+YMEEMLGN A AR +FERWMEWEPE+ AW Y+KFE+R +E
Sbjct: 1 MKNKQVNHTRNIWDRAITILPRANQFWYKYTYMEEMLGNVAGARQVFERWMEWEPEEQAWQTYIKFELRYKE 72
BLAST of mRNA_H-elongata_contig108132.662.1 vs. uniprot
Match: G1RFP5_NOMLE (Uncharacterized protein n=1 Tax=Nomascus leucogenys TaxID=61853 RepID=G1RFP5_NOMLE) HSP 1 Score: 115 bits (289), Expect = 3.510e-28 Identity = 48/69 (69.57%), Postives = 60/69 (86.96%), Query Frame = 1
Query: 1 TVWLRYAEFEMRSKFPNHARNVWDRAVALLPRVDQFWYKYSYMEEMLGNPAKARAIFERWMEWEPEDNA 207
T+WL+YAE EM+++ NHARN+WDRA+ LPRV+QFWYKY+YMEEMLGN A AR +FERWMEW+PE+ A
Sbjct: 254 TLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNIAGARQVFERWMEWQPEEQA 322
BLAST of mRNA_H-elongata_contig108132.662.1 vs. uniprot
Match: A0A1B6HCS7_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Homalodisca liturata TaxID=320908 RepID=A0A1B6HCS7_9HEMI) HSP 1 Score: 112 bits (279), Expect = 6.260e-28 Identity = 47/67 (70.15%), Postives = 57/67 (85.07%), Query Frame = 1
Query: 7 WLRYAEFEMRSKFPNHARNVWDRAVALLPRVDQFWYKYSYMEEMLGNPAKARAIFERWMEWEPEDNA 207
WL+Y E EMR++ NHARN+WDRAV +LPR +QFWYKY+YMEEMLGN A AR +FERWMEWEP++ A
Sbjct: 22 WLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWYKYTYMEEMLGNIAGARQVFERWMEWEPDEQA 88
BLAST of mRNA_H-elongata_contig108132.662.1 vs. uniprot
Match: A0A0M3IR76_ASCLU (Uncharacterized protein n=1 Tax=Ascaris lumbricoides TaxID=6252 RepID=A0A0M3IR76_ASCLU) HSP 1 Score: 109 bits (272), Expect = 1.200e-27 Identity = 46/76 (60.53%), Postives = 58/76 (76.32%), Query Frame = 1
Query: 34 RSKFPNHARNVWDRAVALLPRVDQFWYKYSYMEEMLGNPAKARAIFERWMEWEPEDNAWSAYVKFEMRQEEPTKAR 261
R+K NHARN+WDRAV +LPR QFW KYSYMEE++GN AR +FERW+EWEP + AW Y+ FE+R +E +AR
Sbjct: 71 RNKQVNHARNIWDRAVTILPRATQFWLKYSYMEELIGNLPGARQVFERWIEWEPPEQAWQTYINFELRYKETDRAR 146
BLAST of mRNA_H-elongata_contig108132.662.1 vs. uniprot
Match: A0A1S3F8C7_DIPOR (LOW QUALITY PROTEIN: crooked neck-like protein 1 n=1 Tax=Dipodomys ordii TaxID=10020 RepID=A0A1S3F8C7_DIPOR) HSP 1 Score: 111 bits (278), Expect = 9.570e-27 Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 1
Query: 4 VWLRYAEFEMRSKFPNHARNVWDRAVALLPRVDQFWYKYSYMEEMLGNPAKARAIFERWMEWEPEDNA 207
+WL+YAE EM+++ NHARNVWDRA+ LPRV QFWYKY+YMEE+LGN A R +FERWMEW+PE+ A
Sbjct: 56 LWLKYAEMEMKNRQANHARNVWDRAITALPRVSQFWYKYTYMEELLGNMAGPRQVFERWMEWQPEEQA 123
BLAST of mRNA_H-elongata_contig108132.662.1 vs. uniprot
Match: A0A3P6FYJ1_BRAOL (Uncharacterized protein n=1 Tax=Brassica oleracea TaxID=3712 RepID=A0A3P6FYJ1_BRAOL) HSP 1 Score: 104 bits (260), Expect = 1.010e-26 Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 1
Query: 31 MRSKFPNHARNVWDRAVALLPRVDQFWYKYSYMEEMLGNPAKARAIFERWMEWEPEDNAWSAYVKFEMRQEE 246
M++KF N AR+VWDRAV LLPRVD WYKYS+MEEMLGN A AR IFERWM W P+ W ++ KFE+R E
Sbjct: 1 MKNKFVNSARHVWDRAVYLLPRVDLLWYKYSHMEEMLGNIAGARQIFERWMNWSPDQQGWLSFAKFELRYNE 72
BLAST of mRNA_H-elongata_contig108132.662.1 vs. uniprot
Match: A0A834LRJ6_RHOSS (Uncharacterized protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834LRJ6_RHOSS) HSP 1 Score: 106 bits (264), Expect = 7.700e-25 Identity = 45/69 (65.22%), Postives = 58/69 (84.06%), Query Frame = 1
Query: 1 TVWLRYAEFEMRSKFPNHARNVWDRAVALLPRVDQFWYKYSYMEEMLGNPAKARAIFERWMEWEPEDNA 207
T++LRYA FEMR++F +HARNVWDRAV++ PRVDQ WYKY++MEEM+GN AR +F+RWM WEP+ A
Sbjct: 67 TLFLRYAAFEMRNEFLSHARNVWDRAVSVFPRVDQLWYKYAHMEEMIGNFPGARRVFDRWMRWEPDQEA 135 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108132.662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig108132.662.1 >prot_H-elongata_contig108132.662.1 ID=prot_H-elongata_contig108132.662.1|Name=mRNA_H-elongata_contig108132.662.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp MRSKFPNHARNVWDRAVALLPRVDQFWYKYSYMEEMLGNPAKARAIFERWback to top mRNA from alignment at H-elongata_contig108132:1412..2090+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig108132.662.1 ID=mRNA_H-elongata_contig108132.662.1|Name=mRNA_H-elongata_contig108132.662.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=679bp|location=Sequence derived from alignment at H-elongata_contig108132:1412..2090+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig108132:1412..2090+ >mRNA_H-elongata_contig108132.662.1 ID=mRNA_H-elongata_contig108132.662.1|Name=mRNA_H-elongata_contig108132.662.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig108132:1412..2090+ (Himanthalia elongata Himel1 dioecious)back to top |