mRNA_H-elongata_contig108.654.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig108.654.1
Unique NamemRNA_H-elongata_contig108.654.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108.654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig108contigH-elongata_contig108:24697..25163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size456
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig108.654.1prot_H-elongata_contig108.654.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig108 24800..25098 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929608.4945521-UTR-H-elongata_contig108:24696..247991622929608.4945521-UTR-H-elongata_contig108:24696..24799Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig108 24697..24799 +
1691679089.8471334-UTR-H-elongata_contig108:24696..247991691679089.8471334-UTR-H-elongata_contig108:24696..24799Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig108 24697..24799 +
1622929608.5491102-UTR-H-elongata_contig108:25098..251631622929608.5491102-UTR-H-elongata_contig108:25098..25163Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig108 25099..25163 +
1691679089.8763704-UTR-H-elongata_contig108:25098..251631691679089.8763704-UTR-H-elongata_contig108:25098..25163Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig108 25099..25163 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929608.515701-CDS-H-elongata_contig108:24799..249571622929608.515701-CDS-H-elongata_contig108:24799..24957Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108 24800..24957 +
1691679089.8563073-CDS-H-elongata_contig108:24799..249571691679089.8563073-CDS-H-elongata_contig108:24799..24957Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108 24800..24957 +
1622929608.531865-CDS-H-elongata_contig108:24968..250981622929608.531865-CDS-H-elongata_contig108:24968..25098Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108 24969..25098 +
1691679089.8678875-CDS-H-elongata_contig108:24968..250981691679089.8678875-CDS-H-elongata_contig108:24968..25098Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108 24969..25098 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig108.654.1

>prot_H-elongata_contig108.654.1 ID=prot_H-elongata_contig108.654.1|Name=mRNA_H-elongata_contig108.654.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
MILTRYGCSGGTFFWKGAHFHPFIDTGRQGQCKTLQYHGIQNISPRLVLS
GVALTFLLNSSVFTICACLAASFRISLSHKEYAVRHRITKQSGDD*
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mRNA from alignment at H-elongata_contig108:24697..25163+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig108.654.1 ID=mRNA_H-elongata_contig108.654.1|Name=mRNA_H-elongata_contig108.654.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=467bp|location=Sequence derived from alignment at H-elongata_contig108:24697..25163+ (Himanthalia elongata Himel1 dioecious)
TCTTGTTTCGTTCGAGCTTGGCCTCGGCAGCCGCTTTCGCTCTAGCCTCC
ACCCGTACCAATTCTTCAAGATTTTGCCTCAGATTTTCAGACTCCACCTT
CATATGATACTCACGCGTTATGGGTGTAGTGGTGGTACATTTTTCTGGAA
GGGTGCACATTTCCACCCTTTCATAGATACGGGACGACAGGGGCAATGTA
AAACACTGCAATACCACGGGATCCAGAATATTTCTCCGCGACTCGTACTC
TCCGGGGTGGCATCGGGAATATCCTGACCTTTTTGCTGAATTCAAGTGTT
TTTACGATTTGCGCATGCCTGGCCGCCTCTTTTCGCATTTCCCTGTCCCA
CAAGGAATATGCGGTGCGTCACCGAATAACAAAACAATCTGGTGACGACT
GAGGGTGAGGTGTGGGATGAACACAAACATTGATTCTTCCATACATTTAA
AAACATATAGATAATAT
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Coding sequence (CDS) from alignment at H-elongata_contig108:24697..25163+

>mRNA_H-elongata_contig108.654.1 ID=mRNA_H-elongata_contig108.654.1|Name=mRNA_H-elongata_contig108.654.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig108:24697..25163+ (Himanthalia elongata Himel1 dioecious)
ATGATACTCACGCGTTATGGGTGTAGTGGTGGTACATTTTTCTGGAAGGG
TGCACATTTCCACCCTTTCATAGATACGGGACGACAGGGGCAATGTAAAA
CACTGCAATACCACGGGATCCAGAATATTTCTCCGCGACTCGTACTCTCC
GGGGTGGCATGATACTCACGCGTTATGGGTGTAGTGGTGGTACATTTTTC
TGGAAGGGTGCACATTTCCACCCTTTCATAGATACGGGACGACAGGGGCA
ATGTAAAACACTGCAATACCACGGGATCCAGAATATTTCTCCGCGACTCG
TACTCTCCGGGGTGGCCCTGACCTTTTTGCTGAATTCAAGTGTTTTTACG
ATTTGCGCATGCCTGGCCGCCTCTTTTCGCATTTCCCTGTCCCACAAGGA
ATATGCGGTGCGTCACCGAATAACAAAACAATCTGGTGACGACTGACCTG
ACCTTTTTGCTGAATTCAAGTGTTTTTACGATTTGCGCATGCCTGGCCGC
CTCTTTTCGCATTTCCCTGTCCCACAAGGAATATGCGGTGCGTCACCGAA
TAACAAAACAATCTGGTGACGACTGA
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