mRNA_H-elongata_contig107964.650.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig107964.650.1
Unique NamemRNA_H-elongata_contig107964.650.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig107964.650.1 vs. uniprot
Match: D7FHD1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHD1_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 1.100e-23
Identity = 46/67 (68.66%), Postives = 53/67 (79.10%), Query Frame = 1
Query:    1 GMFLADRILLGGAVAESCTRALVPGYRDRIYRHEAGHFLVAYLLGCPVQGCLLDPFVVSLVQRGIQG 201
            G+  ADR+LL GA++ES TR +VP YR+RI RHEAGHFLVAYLLGCPVQ CLLDPFV+     G QG
Sbjct:  261 GLIFADRLLLNGALSESLTRLIVPAYRERIIRHEAGHFLVAYLLGCPVQACLLDPFVLGSGLTGAQG 327          
BLAST of mRNA_H-elongata_contig107964.650.1 vs. uniprot
Match: A0A7S0VT99_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VT99_9CRYP)

HSP 1 Score: 78.6 bits (192), Expect = 1.310e-15
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    7 FLADRILLGGAVAESCTRALVPGYRDRIYRHEAGHFLVAYLLGCPVQGCLLDPFVVSLVQRGIQG 201
            FLADRIL+ GAV ES  R L P Y+ ++ +HEAGHFL+AYLLGCP+QG  L  +  S    G+QG
Sbjct:   35 FLADRILVSGAVLESIYRFLFPQYKQKVVQHEAGHFLIAYLLGCPIQGFFLSAWDAS--SAGLQG 97          
BLAST of mRNA_H-elongata_contig107964.650.1 vs. uniprot
Match: A0A7S1EHK9_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EHK9_HEMAN)

HSP 1 Score: 78.6 bits (192), Expect = 1.410e-15
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    7 FLADRILLGGAVAESCTRALVPGYRDRIYRHEAGHFLVAYLLGCPVQGCLLDPFVVSLVQRGIQG 201
            FLADR+L+ GAV ES  R L P Y+ ++ +HEAGHFL+AYLLGCP+QG  L  +  S    G+QG
Sbjct:  154 FLADRVLVSGAVLESIYRLLFPKYKSKVVQHEAGHFLIAYLLGCPIQGFFLSAWDAS--SAGLQG 216          
BLAST of mRNA_H-elongata_contig107964.650.1 vs. uniprot
Match: A0A7S0XWC1_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XWC1_HEMAN)

HSP 1 Score: 78.6 bits (192), Expect = 1.950e-15
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    7 FLADRILLGGAVAESCTRALVPGYRDRIYRHEAGHFLVAYLLGCPVQGCLLDPFVVSLVQRGIQG 201
            FLADR+L+ GAV ES  R L P Y+ ++ +HEAGHFL+AYLLGCP+QG  L  +  S    G+QG
Sbjct:  152 FLADRVLVSGAVLESIYRLLFPKYKSKVVQHEAGHFLIAYLLGCPIQGFFLSAWDAS--SAGLQG 214          
BLAST of mRNA_H-elongata_contig107964.650.1 vs. uniprot
Match: A0A835YLP7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLP7_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 3.000e-15
Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 1
Query:    1 GMFLADRILLGGAVAESCTRALVPGYRDRIYRHEAGHFLVAYLLGCPVQGCLLDPFVVSLVQRGIQG 201
            G+F  DRI+L GA+ ES  R + P Y+ +I RHEAGHFL+AYLLG  + GCLLDP+ V    RG  G
Sbjct:  197 GVFALDRIVLKGALFESIARIINPTYKAKIIRHEAGHFLLAYLLGLGISGCLLDPWQVRKFVRGQGG 263          
BLAST of mRNA_H-elongata_contig107964.650.1 vs. uniprot
Match: A0A7S2WUW6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUW6_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.290e-14
Identity = 31/56 (55.36%), Postives = 42/56 (75.00%), Query Frame = 1
Query:    1 GMFLADRILLGGAVAESCTRALVPGYRDRIYRHEAGHFLVAYLLGCPVQGCLLDPF 168
            G FL DR++  GA+ E+  RA+ P YR+++ RHEA HFLVAYLLGCPV+ C++  F
Sbjct:  260 GFFLLDRLVFQGALFETAYRAVAPQYREKVIRHEAAHFLVAYLLGCPVESCIISAF 315          
BLAST of mRNA_H-elongata_contig107964.650.1 vs. uniprot
Match: A0A7S3FEW8_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3FEW8_9EUKA)

HSP 1 Score: 73.6 bits (179), Expect = 3.830e-14
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 1
Query:   16 DRILLGGAVAESCTRALVPGYRDRIYRHEAGHFLVAYLLGCPVQGCLLD 162
            DR LL GA+ ES TRA+ PGY   +  HEAGHFL AYLLGCP++ CLLD
Sbjct:    2 DRALLRGALGESITRAVKPGYARTVREHEAGHFLAAYLLGCPIEACLLD 50          
BLAST of mRNA_H-elongata_contig107964.650.1 vs. uniprot
Match: A0A7S0LZG5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LZG5_9CRYP)

HSP 1 Score: 74.3 bits (181), Expect = 5.070e-14
Identity = 34/65 (52.31%), Postives = 44/65 (67.69%), Query Frame = 1
Query:    7 FLADRILLGGAVAESCTRALVPGYRDRIYRHEAGHFLVAYLLGCPVQGCLLDPFVVSLVQRGIQG 201
            F+ DR LL GAV ES  R L P Y++++ +HEAGHFL+AYLLGCP+QG  L  +     + GI G
Sbjct:  246 FIVDRALLSGAVFESVYRLLFPQYKEKVIKHEAGHFLLAYLLGCPIQGFFLSAW--DATKAGISG 308          
BLAST of mRNA_H-elongata_contig107964.650.1 vs. uniprot
Match: W7TJA2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJA2_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 5.320e-14
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    7 FLADRILLGGAVAESCTRALVPGYRDRIYRHEAGHFLVAYLLGCPVQGCLLDPFVVSLVQRG 192
            F  DR LLGG   ++  R ++P Y++RI RHEAGHFL+A+LLGCPVQ C+L P      ++G
Sbjct:  325 FFVDRFLLGGRGFDALARVVLPRYKERIIRHEAGHFLLAHLLGCPVQDCVLRPVFNGRWEKG 386          
BLAST of mRNA_H-elongata_contig107964.650.1 vs. uniprot
Match: A0A7S2ECE3_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ECE3_TRICV)

HSP 1 Score: 73.9 bits (180), Expect = 7.330e-14
Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 1
Query:    4 MFLA--DRILLGGAVAESCTRALVPGYRDRIYRHEAGHFLVAYLLGCPVQGCLLDPF 168
            +FLA  DR+L+ GAV E+  R ++P Y  +I +HEAGHFL AYLLGCPV+GC+L P+
Sbjct:  247 LFLAFMDRLLVNGAVFETAMRTVMPKYGKKILKHEAGHFLCAYLLGCPVEGCVLSPW 303          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107964.650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHD1_ECTSI1.100e-2368.66Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0VT99_9CRYP1.310e-1556.92Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S1EHK9_HEMAN1.410e-1555.38Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0XWC1_HEMAN1.950e-1555.38Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A835YLP7_9STRA3.000e-1555.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2WUW6_9STRA1.290e-1455.36Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3FEW8_9EUKA3.830e-1465.31Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S0LZG5_9CRYP5.070e-1452.31Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
W7TJA2_9STRA5.320e-1451.61Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A7S2ECE3_TRICV7.330e-1457.89Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig107964contigH-elongata_contig107964:147..350 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue1.1e-19
Seed eggNOG ortholog2880.D7FHD1
EggNOG OGs28IYK@1,2QRAA@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size201
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929608.2470982-CDS-H-elongata_contig107964:146..3471622929608.2470982-CDS-H-elongata_contig107964:146..347Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107964 147..347 -
1691679089.751602-CDS-H-elongata_contig107964:146..3471691679089.751602-CDS-H-elongata_contig107964:146..347Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107964 147..347 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929608.260316-UTR-H-elongata_contig107964:347..3501622929608.260316-UTR-H-elongata_contig107964:347..350Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig107964 348..350 -
1691679089.7613592-UTR-H-elongata_contig107964:347..3501691679089.7613592-UTR-H-elongata_contig107964:347..350Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig107964 348..350 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig107964.650.1prot_H-elongata_contig107964.650.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig107964 147..347 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig107964.650.1

>prot_H-elongata_contig107964.650.1 ID=prot_H-elongata_contig107964.650.1|Name=mRNA_H-elongata_contig107964.650.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
MFLADRILLGGAVAESCTRALVPGYRDRIYRHEAGHFLVAYLLGCPVQGC
LLDPFVVSLVQRGIQG*
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mRNA from alignment at H-elongata_contig107964:147..350-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig107964.650.1 ID=mRNA_H-elongata_contig107964.650.1|Name=mRNA_H-elongata_contig107964.650.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at H-elongata_contig107964:147..350- (Himanthalia elongata Himel1 dioecious)
GGCATGTTTCTGGCGGACAGGATTCTGCTGGGTGGGGCCGTGGCGGAGTC TTGCACTCGAGCGCTTGTTCCGGGCTACCGAGATCGCATATATCGCCACG AAGCCGGCCACTTCCTGGTAGCCTATCTCCTCGGCTGCCCCGTACAGGGC TGCCTCTTGGACCCCTTTGTGGTGAGTCTTGTTCAAAGAGGAATCCAGGG ATGA
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Coding sequence (CDS) from alignment at H-elongata_contig107964:147..350-

>mRNA_H-elongata_contig107964.650.1 ID=mRNA_H-elongata_contig107964.650.1|Name=mRNA_H-elongata_contig107964.650.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig107964:147..350- (Himanthalia elongata Himel1 dioecious)
ATGTTTCTGGCGGACAGGATTCTGCTGGGTGGGGCCGTGGCGGAGTCTTG
CACTCGAGCGCTTGTTCCGGGCTACCGAGATCGCATATATCGCCACGAAG
CCGGCCACTTCCTGGTAGCCTATCTCCTCGGCTGCCCCGTACAGGGCTGC
CTCTTGGACCCCTTTGTGGTGAGTCTTGTTCAAAGAGGAATCCAGGGATG
AATGTTTCTGGCGGACAGGATTCTGCTGGGTGGGGCCGTGGCGGAGTCTT
GCACTCGAGCGCTTGTTCCGGGCTACCGAGATCGCATATATCGCCACGAA
GCCGGCCACTTCCTGGTAGCCTATCTCCTCGGCTGCCCCGTACAGGGCTG
CCTCTTGGACCCCTTTGTGGTGAGTCTTGTTCAAAGAGGAATCCAGGGAT
GA
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