mRNA_H-elongata_contig107962.649.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig107962.649.1
Unique NamemRNA_H-elongata_contig107962.649.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig107962.649.1 vs. uniprot
Match: D7FMN7_ECTSI (Probable fusion protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMN7_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 1.920e-44
Identity = 77/116 (66.38%), Postives = 94/116 (81.03%), Query Frame = 1 
Query:   43 KLRQLMCYICATNAGNNILRAHFGFMAHRNGVPLSRLANIAKSEVDRDVAEDTAVGAKEVTAMALAEAASGAPSTMSTSLVGLVSRQYTPAGVIELITTVSLAFMYHRWTSVYVPK 390
            +L+QLMCYICATNAGN ILRAH+ FMAHRNG+P+ +LA    ++    VA D  + AK+V AMALAEA SG PST+S  LVGL+ RQY+PAGVIELI TVSLAFMYHRWT++Y+P+
Sbjct:  262 QLKQLMCYICATNAGNTILRAHYAFMAHRNGMPIRQLATATNTDSSEAVAADDTIDAKQVAAMALAEACSGTPSTVSPVLVGLLMRQYSPAGVIELIATVSLAFMYHRWTAIYMPR 377
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BLAST of mRNA_H-elongata_contig107962.649.1 vs. uniprot
Match: A0A6H5JWC3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JWC3_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 3.160e-27
Identity = 63/117 (53.85%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:   43 KLRQLMCYICATNAGNNILRAHFGFMAHRNGVPLSRLANIAKSEVDRDVAEDTAVGAKEVTAMALAEAASGAPSTMSTSLVGLVSRQYTPAGVIELITTVSLAFMYHRWTSVYVPKR 393
            +L+QLM Y CATNA NN+LRAHF FMA R+GV LSRL  +  +++      D+A    E  AMA A+AAS  P+ M+ +L GL+SR ++P  VIEL+ TVS+ F  HRWTSVYVP+R
Sbjct:  346 QLKQLMAYQCATNAENNVLRAHFAFMAMRSGVTLSRLIQV--TDITSTGGGDSAA---EDAAMAFAQAASWTPTRMTAALAGLISRLFSPPAVIELLITVSVEFAIHRWTSVYVPRR 457
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BLAST of mRNA_H-elongata_contig107962.649.1 vs. uniprot
Match: A0A6H5JXG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXG8_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.670e-26
Identity = 59/115 (51.30%), Postives = 75/115 (65.22%), Query Frame = 1 
Query:   49 RQLMCYICATNAGNNILRAHFGFMAHRNGVPLSRLANIAKSEVDRDVAEDTAVGAKEVTAMALAEAASGAPSTMSTSLVGLVSRQYTPAGVIELITTVSLAFMYHRWTSVYVPKR 393
            +Q M Y+ AT+A N ILRAHF FMAHRNGV +S LA+      D D  ED     K+  A+++A A  G P  +   LV L+ RQYTPAGVIEL+ T+SL  M  RWTS+Y+PK+
Sbjct:  289 KQTMGYMLATSADNTILRAHFAFMAHRNGVSVSNLASATAEGGDTDGGEDL----KKAAALSMARACGGTPGPLPRELVALLMRQYTPAGVIELVNTLSLVSMLQRWTSIYMPKQ 399
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BLAST of mRNA_H-elongata_contig107962.649.1 vs. uniprot
Match: D7G5G2_ECTSI (Probable fusion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G2_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 7.740e-25
Identity = 57/106 (53.77%), Postives = 69/106 (65.09%), Query Frame = 1 
Query:   76 TNAGNNILRAHFGFMAHRNGVPLSRLANIAKSEVDRDVAEDTAVGAKEVTAMALAEAASGAPSTMSTSLVGLVSRQYTPAGVIELITTVSLAFMYHRWTSVYVPKR 393
            T+A N ILRAHF FMAHRNGV +S LAN      D D  ED     K+  A+++A A SG    M   LV L+ RQYTPAGVIEL+ T+SL  M  RWTS+Y+PK+
Sbjct:  104 TSADNTILRAHFAFMAHRNGVSVSDLANATAEGGDTDGGEDL----KKAAALSMARACSGTLGPMPRELVALLMRQYTPAGVIELVNTLSLVSMLQRWTSIYMPKQ 205
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107962.649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FMN7_ECTSI1.920e-4466.38Probable fusion protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JWC3_9PHAE3.160e-2753.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JXG8_9PHAE1.670e-2651.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5G2_ECTSI7.740e-2553.77Probable fusion protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig107962contigH-elongata_contig107962:1486..1902 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-22_000490.1
Hectar predicted targeting categoryother localisation
Exons1
Model size417
Cds size417
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929608.2000792-CDS-H-elongata_contig107962:1485..19021622929608.2000792-CDS-H-elongata_contig107962:1485..1902Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107962 1486..1902 +
1691679089.7391307-CDS-H-elongata_contig107962:1485..19021691679089.7391307-CDS-H-elongata_contig107962:1485..1902Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107962 1486..1902 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig107962.649.1prot_H-elongata_contig107962.649.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig107962 1486..1902 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig107962.649.1

>prot_H-elongata_contig107962.649.1 ID=prot_H-elongata_contig107962.649.1|Name=mRNA_H-elongata_contig107962.649.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp
MLPSRLPKAPTCNPKLRQLMCYICATNAGNNILRAHFGFMAHRNGVPLSR
LANIAKSEVDRDVAEDTAVGAKEVTAMALAEAASGAPSTMSTSLVGLVSR
QYTPAGVIELITTVSLAFMYHRWTSVYVPKRCVLNLKS*
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mRNA from alignment at H-elongata_contig107962:1486..1902+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig107962.649.1 ID=mRNA_H-elongata_contig107962.649.1|Name=mRNA_H-elongata_contig107962.649.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=417bp|location=Sequence derived from alignment at H-elongata_contig107962:1486..1902+ (Himanthalia elongata Himel1 dioecious)
ATGTTACCAAGCCGTCTCCCTAAAGCACCCACCTGCAACCCTAAATTGCG
ACAGCTCATGTGCTACATTTGCGCGACCAACGCGGGAAACAACATACTCC
GAGCGCACTTCGGCTTCATGGCGCACCGCAACGGGGTACCGCTCTCCCGC
CTCGCAAACATTGCCAAGAGCGAGGTCGATAGGGATGTGGCGGAGGACAC
GGCCGTCGGGGCCAAGGAGGTGACCGCGATGGCCCTGGCAGAGGCGGCAA
GCGGGGCCCCCTCGACAATGTCCACGTCCCTGGTGGGGCTCGTGTCGCGG
CAATACACACCCGCGGGGGTGATCGAGCTCATCACAACCGTGTCCCTGGC
CTTTATGTACCACCGCTGGACGTCTGTTTACGTCCCCAAGAGGTGTGTGC
TGAACTTAAAGTCTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig107962:1486..1902+

>mRNA_H-elongata_contig107962.649.1 ID=mRNA_H-elongata_contig107962.649.1|Name=mRNA_H-elongata_contig107962.649.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig107962:1486..1902+ (Himanthalia elongata Himel1 dioecious)
ATGTTACCAAGCCGTCTCCCTAAAGCACCCACCTGCAACCCTAAATTGCG
ACAGCTCATGTGCTACATTTGCGCGACCAACGCGGGAAACAACATACTCC
GAGCGCACTTCGGCTTCATGGCGCACCGCAACGGGGTACCGCTCTCCCGC
CTCGCAAACATTGCCAAGAGCGAGGTCGATAGGGATGTGGCGGAGGACAC
GGCCGTCGGGGCCAAGGAGGTGACCGCGATGGCCCTGGCAGAGGCGGCAA
GCGGGGCCCCCTCGACAATGTCCACGTCCCTGGTGGGGCTCGTGTCGCGG
CAATACACACCCGCGGGGGTGATCGAGCTCATCACAACCGTGTCCCTGGC
CTTTATGTACCACCGCTGGACGTCTGTTTACGTCCCCAAGAGGTGTGTGC
TGAACTTAAAGTCTTAGATGTTACCAAGCCGTCTCCCTAAAGCACCCACC
TGCAACCCTAAATTGCGACAGCTCATGTGCTACATTTGCGCGACCAACGC
GGGAAACAACATACTCCGAGCGCACTTCGGCTTCATGGCGCACCGCAACG
GGGTACCGCTCTCCCGCCTCGCAAACATTGCCAAGAGCGAGGTCGATAGG
GATGTGGCGGAGGACACGGCCGTCGGGGCCAAGGAGGTGACCGCGATGGC
CCTGGCAGAGGCGGCAAGCGGGGCCCCCTCGACAATGTCCACGTCCCTGG
TGGGGCTCGTGTCGCGGCAATACACACCCGCGGGGGTGATCGAGCTCATC
ACAACCGTGTCCCTGGCCTTTATGTACCACCGCTGGACGTCTGTTTACGT
CCCCAAGAGGTGTGTGCTGAACTTAAAGTCTTAG
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