mRNA_H-elongata_contig107935.647.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig107935.647.1
Unique NamemRNA_H-elongata_contig107935.647.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig107935.647.1 vs. uniprot
Match: D7G8Z5_ECTSI (Peptidase_M16 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Z5_ECTSI)

HSP 1 Score: 274 bits (701), Expect = 4.470e-92
Identity = 138/172 (80.23%), Postives = 153/172 (88.95%), Query Frame = 1
Query:    1 LPAALKAWTWKNPQGILVSPLDRRHYRWLVLSNGLQVMVISDPDATKSAAAISVDVGAASDPQELPGLAHFLEHMLFLGTSKYPAENAYKSYLAKHGGRSNASTSMDATTFMFEVGAEHLRRGLAQEEGALEIFSQFFVSPLLSESSTGRELMAVDSEDSKNRTSDGRRILQ 516
            L  AL+AW WKNPQGILVSP+D+RHYRWL+L NGLQVMVISDP+A K+AAA+SVDVGAASDP  LPGLAHFLEHMLFLGTSKYP ENAYKSYLAKHGGRSNAST+MD TTF FEVG++HLR       GAL+IFSQFFVSPL +ESSTGREL+AVDSEDSKNRT+D RR+LQ
Sbjct:    6 LAEALEAWPWKNPQGILVSPMDKRHYRWLLLPNGLQVMVISDPNANKAAAAMSVDVGAASDPVGLPGLAHFLEHMLFLGTSKYPVENAYKSYLAKHGGRSNASTAMDVTTFKFEVGSDHLR-------GALDIFSQFFVSPLFTESSTGRELLAVDSEDSKNRTNDSRRMLQ 170          
BLAST of mRNA_H-elongata_contig107935.647.1 vs. uniprot
Match: A0A836CLR7_9STRA (Metalloenzyme, LuxS/M16 peptidase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLR7_9STRA)

HSP 1 Score: 225 bits (574), Expect = 5.390e-65
Identity = 112/174 (64.37%), Postives = 137/174 (78.74%), Query Frame = 1
Query:    1 LPAALKAWTWKNPQGILVSPLDRRHYRWLVLSNGLQVMVISDPDATKSAAAISVDVGAASDPQELPGLAHFLEHMLFLGTSKYPAENAYKSYLAKHGGRSNASTSMDATTFMFEVGAEHLRRGLAQEEGALEIFSQFFVSPLLSESSTGRELMAVDSEDSKNRTSDGRRILQVI 522
            +P AL +W W+  QG+L S LD R Y+++ L NGL+V+++ D  A K+AAA++V+VGAASDP  +PGLAHF EHMLFLGT KYP ENAYKSYLAKHGGRSNASTSM+AT + FEVGA HLR       GAL IFSQFF+ PL +E +T RE+ AVDSED+KNRTSD RR+LQV+
Sbjct:  242 IPPALASWPWRTEQGLLKSSLDHRDYKYVTLCNGLKVLLVHDHKADKAAAAMAVNVGAASDPDLMPGLAHFCEHMLFLGTGKYPTENAYKSYLAKHGGRSNASTSMEATVYQFEVGAPHLR-------GALSIFSQFFIDPLFTEGATDREVRAVDSEDAKNRTSDERRLLQVL 408          
BLAST of mRNA_H-elongata_contig107935.647.1 vs. uniprot
Match: A0A7S4QNY8_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4QNY8_9DINO)

HSP 1 Score: 194 bits (494), Expect = 5.570e-60
Identity = 100/168 (59.52%), Postives = 123/168 (73.21%), Query Frame = 1
Query:   16 KAWTWKNPQGILVSPLDRRHYRWLVLSNGLQVMVISDPDATKSAAAISVDVGAASDPQELPGLAHFLEHMLFLGTSKYPAENAYKSYLAKHGGRSNASTSMDATTFMFEVGAEHLRRGLAQEEGALEIFSQFFVSPLLSESSTGRELMAVDSEDSKNRTSDGRRILQV 519
            ++W      G+ VSP D R +R + L NGL  +V SDP + K+AAA++V VGA +DP ELPGLAHF EHM FLG+ KYP ENAYK YL+ HGG+SNASTS D T F F+V A H        EGAL+IF+QFFV+PL +ES+T RE+ AVDSEDSKNR +DGRR+LQV
Sbjct:   23 QSWLLVGDDGLEVSPQDDRRHRLVTLPNGLCALVTSDPTSEKAAAALAVMVGAMADPPELPGLAHFCEHMCFLGSEKYPEENAYKKYLSAHGGKSNASTSSDRTVFQFDVAAAHF-------EGALDIFAQFFVAPLFTESATDREMKAVDSEDSKNRCNDGRRLLQV 183          
BLAST of mRNA_H-elongata_contig107935.647.1 vs. uniprot
Match: A0A6H5KRX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRX7_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 1.330e-55
Identity = 98/117 (83.76%), Postives = 106/117 (90.60%), Query Frame = 1
Query:    1 LPAALKAWTWKNPQGILVSPLDRRHYRWLVLSNGLQVMV--ISDPDATKSAAAISVDVGAASDPQELPGLAHFLEHMLFLGTSKYPAENAYKSYLAKHGGRSNASTSMDATTFMFEV 345
            L AAL+AW WKNPQGILVSP+D+RHYRWL+L NGLQVMV  ISDP+A K+AAA+SVDVGAASDP  LPGLAHFLEHMLFLGTSKYP ENAYKSYLAKHGGRSNAST+MD TTF FEV
Sbjct:  137 LAAALEAWPWKNPQGILVSPMDKRHYRWLLLPNGLQVMVMVISDPNANKAAAAMSVDVGAASDPVGLPGLAHFLEHMLFLGTSKYPVENAYKSYLAKHGGRSNASTAMDVTTFKFEV 253          
BLAST of mRNA_H-elongata_contig107935.647.1 vs. uniprot
Match: A0A8B8ICV3_9NEOP (insulin-degrading enzyme-like n=1 Tax=Vanessa tameamea TaxID=334116 RepID=A0A8B8ICV3_9NEOP)

HSP 1 Score: 174 bits (442), Expect = 1.130e-51
Identity = 93/166 (56.02%), Postives = 118/166 (71.08%), Query Frame = 1
Query:   31 KNPQGILVSPLDRRHYRWLVLSNGLQVMVISDPDATKSAAAISVDVGAASDPQELPGLAHFLEHMLFLGTSKYPAENAYKSYLAKHGGRSNASTSMDATTFMFEVGAEHLRRGLAQEEGALEIFSQFFVSPLLSESSTGRELMAVDSEDSKNRTSDGRRILQVIES 528
            K    I+ SP D+R YR L L+N L+V+++SDP   KSAAA+ V+VG  SDP ELPGLAHF EHMLFLGT KYP EN Y  +L+ HGG SNASTS D TT+ F+V  +HL        GAL+IF+QFF++PL +ES+T REL AV+SE  KN +SD  R+ Q+ +S
Sbjct:   34 KKYDDIIKSPEDKREYRGLKLANRLKVLLVSDPTTDKSAAALDVNVGYLSDPDELPGLAHFCEHMLFLGTEKYPEENEYNKFLSAHGGSSNASTSSDHTTYFFDVLPQHLA-------GALDIFAQFFIAPLFTESATSRELSAVNSEHEKNVSSDTWRLDQLNKS 192          
BLAST of mRNA_H-elongata_contig107935.647.1 vs. uniprot
Match: A0A3S2PGF9_CHISP (Peptidase_M16 domain-containing protein n=1 Tax=Chilo suppressalis TaxID=168631 RepID=A0A3S2PGF9_CHISP)

HSP 1 Score: 177 bits (449), Expect = 3.010e-51
Identity = 94/163 (57.67%), Postives = 117/163 (71.78%), Query Frame = 1
Query:   31 KNPQGILVSPLDRRHYRWLVLSNGLQVMVISDPDATKSAAAISVDVGAASDPQELPGLAHFLEHMLFLGTSKYPAENAYKSYLAKHGGRSNASTSMDATTFMFEVGAEHLRRGLAQEEGALEIFSQFFVSPLLSESSTGRELMAVDSEDSKNRTSDGRRILQV 519
            K    I+ S  D+R YR LVL+N L+V+++SDP   KSAAA+ V+VG  SDP ELPGLAHF EHMLFLGT KYP EN Y  +L++HGG SNASTS D TT+ F+V   HL        GAL+IF+QFF+SPL +ES+TGREL AV+SE  KN +SD  R+ Q+
Sbjct:   74 KRYDNIVKSQEDKREYRGLVLANRLKVLLVSDPTTDKSAAALDVNVGYLSDPDELPGLAHFCEHMLFLGTEKYPEENEYNKFLSEHGGSSNASTSSDHTTYYFDVLPAHL-------SGALDIFAQFFISPLFTESATGRELSAVNSEHEKNTSSDTWRLDQL 229          
BLAST of mRNA_H-elongata_contig107935.647.1 vs. uniprot
Match: A0A821UB16_9NEOP (Hypothetical protein n=5 Tax=Pieris TaxID=7115 RepID=A0A821UB16_9NEOP)

HSP 1 Score: 184 bits (467), Expect = 1.160e-50
Identity = 95/161 (59.01%), Postives = 120/161 (74.53%), Query Frame = 1
Query:   46 ILVSPLDRRHYRWLVLSNGLQVMVISDPDATKSAAAISVDVGAASDPQELPGLAHFLEHMLFLGTSKYPAENAYKSYLAKHGGRSNASTSMDATTFMFEVGAEHLRRGLAQEEGALEIFSQFFVSPLLSESSTGRELMAVDSEDSKNRTSDGRRILQVIES 528
            I+ SP D+R YR L L NG++V+++SDPD  K+AAA+ V+VG  SDP+ELPGLAHF EHMLFLGT KYP EN Y  +L++HGG SNASTS D TTF F+V   HL         +L+IF+QFF++PL +ES+TGREL AVDSE  KNR SDG R+ Q+ +S
Sbjct:   39 IIKSPEDKRVYRGLQLGNGMKVLLVSDPDTEKAAAALDVNVGYLSDPEELPGLAHFCEHMLFLGTEKYPQENEYSKFLSEHGGSSNASTSADHTTFYFDVLPSHLG-------ASLDIFAQFFIAPLFTESATGRELSAVDSEHEKNRASDGWRLEQLNKS 192          
BLAST of mRNA_H-elongata_contig107935.647.1 vs. uniprot
Match: A0A2A4K9R5_HELVI (Uncharacterized protein n=1 Tax=Heliothis virescens TaxID=7102 RepID=A0A2A4K9R5_HELVI)

HSP 1 Score: 182 bits (463), Expect = 4.470e-50
Identity = 97/166 (58.43%), Postives = 122/166 (73.49%), Query Frame = 1
Query:   31 KNPQGILVSPLDRRHYRWLVLSNGLQVMVISDPDATKSAAAISVDVGAASDPQELPGLAHFLEHMLFLGTSKYPAENAYKSYLAKHGGRSNASTSMDATTFMFEVGAEHLRRGLAQEEGALEIFSQFFVSPLLSESSTGRELMAVDSEDSKNRTSDGRRILQVIES 528
            K    I+ SP D+RHYR LVLSN L+V+++SD    KSAAA+ V+VG  SDP+ELPGLAHF EHMLFLGT KYP EN Y  +L++HGG SNASTS D TT+ F+V  EHL +       AL+IF+QFF+SPL +ES+TGREL AV+SE  KN +SD  R+ Q+ +S
Sbjct:  122 KRYDNIVKSPEDKRHYRGLVLSNRLRVLLVSDMTTDKSAAAMDVNVGYLSDPEELPGLAHFCEHMLFLGTEKYPEENEYNKFLSEHGGSSNASTSSDHTTYYFDVLPEHLHK-------ALDIFAQFFISPLFTESATGRELSAVNSEHEKNTSSDTWRLDQLNKS 280          
BLAST of mRNA_H-elongata_contig107935.647.1 vs. uniprot
Match: UPI001E27B7D4 (insulin-degrading enzyme n=1 Tax=Colias crocea TaxID=72248 RepID=UPI001E27B7D4)

HSP 1 Score: 182 bits (462), Expect = 5.660e-50
Identity = 98/166 (59.04%), Postives = 121/166 (72.89%), Query Frame = 1
Query:   31 KNPQGILVSPLDRRHYRWLVLSNGLQVMVISDPDATKSAAAISVDVGAASDPQELPGLAHFLEHMLFLGTSKYPAENAYKSYLAKHGGRSNASTSMDATTFMFEVGAEHLRRGLAQEEGALEIFSQFFVSPLLSESSTGRELMAVDSEDSKNRTSDGRRILQVIES 528
            K    I+ SP DRR YR L LSN L+V+++SDP   KSAAA+ V+VG  SDP ELPGLAHF EHMLFLGT KYP EN Y  +L++HGG SNASTS D TTF F+V  +HL +       AL+IF+QFF+SPL +ES+TGREL AV+SE  KNR+SD  R+ Q+ +S
Sbjct:   50 KRFDDIVKSPEDRRVYRGLQLSNNLKVLLVSDPSTDKSAAAMDVNVGYLSDPDELPGLAHFCEHMLFLGTEKYPEENEYNKFLSEHGGSSNASTSSDHTTFYFDVLPQHLPK-------ALDIFAQFFISPLFTESATGRELSAVNSEHEKNRSSDTWRLEQLHKS 208          
BLAST of mRNA_H-elongata_contig107935.647.1 vs. uniprot
Match: A0A835GP68_SPOEX (Uncharacterized protein (Fragment) n=4 Tax=Spodoptera TaxID=7106 RepID=A0A835GP68_SPOEX)

HSP 1 Score: 181 bits (459), Expect = 1.560e-49
Identity = 98/166 (59.04%), Postives = 120/166 (72.29%), Query Frame = 1
Query:   31 KNPQGILVSPLDRRHYRWLVLSNGLQVMVISDPDATKSAAAISVDVGAASDPQELPGLAHFLEHMLFLGTSKYPAENAYKSYLAKHGGRSNASTSMDATTFMFEVGAEHLRRGLAQEEGALEIFSQFFVSPLLSESSTGRELMAVDSEDSKNRTSDGRRILQVIES 528
            K    I+ SP D+R YR LVLSN L+VM++SD    KSAAA+ V+VG  SDP+ELPGLAHF EHMLFLGT KYP EN Y  +LA+HGG SNASTS D TT+ F+V  EHL +       AL+IF+QFF+SPL +ES+TGREL AV SE  KN +SD  R+ Q+ +S
Sbjct:  191 KRYDNIVKSPEDKRSYRGLVLSNRLRVMLVSDLSTDKSAAALDVNVGYLSDPEELPGLAHFCEHMLFLGTKKYPEENEYNKFLAEHGGSSNASTSSDHTTYYFDVLPEHLHK-------ALDIFAQFFISPLFTESATGRELSAVHSEHEKNTSSDTWRLDQLNKS 349          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107935.647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8Z5_ECTSI4.470e-9280.23Peptidase_M16 domain-containing protein n=1 Tax=Ec... [more]
A0A836CLR7_9STRA5.390e-6564.37Metalloenzyme, LuxS/M16 peptidase-like protein n=1... [more]
A0A7S4QNY8_9DINO5.570e-6059.52Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A6H5KRX7_9PHAE1.330e-5583.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8B8ICV3_9NEOP1.130e-5156.02insulin-degrading enzyme-like n=1 Tax=Vanessa tame... [more]
A0A3S2PGF9_CHISP3.010e-5157.67Peptidase_M16 domain-containing protein n=1 Tax=Ch... [more]
A0A821UB16_9NEOP1.160e-5059.01Hypothetical protein n=5 Tax=Pieris TaxID=7115 Rep... [more]
A0A2A4K9R5_HELVI4.470e-5058.43Uncharacterized protein n=1 Tax=Heliothis virescen... [more]
UPI001E27B7D45.660e-5059.04insulin-degrading enzyme n=1 Tax=Colias crocea Tax... [more]
A0A835GP68_SPOEX1.560e-4959.04Uncharacterized protein (Fragment) n=4 Tax=Spodopt... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig107935contigH-elongata_contig107935:78..1670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score276.6
Seed ortholog evalue8.4e-72
Seed eggNOG ortholog2880.D7G8Z5
KEGG koko:K01408
KEGG Pathwayko05010,map05010
EggNOG free text desc.Belongs to the peptidase M16 family
EggNOG OGsCOG1025@1,KOG0959@2759
EC3.4.24.56
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Exons4
Model size537
Cds size537
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig107935.647.1prot_H-elongata_contig107935.647.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig107935 78..1670 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929608.0632873-CDS-H-elongata_contig107935:77..2311622929608.0632873-CDS-H-elongata_contig107935:77..231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107935 78..231 -
1691679089.676703-CDS-H-elongata_contig107935:77..2311691679089.676703-CDS-H-elongata_contig107935:77..231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107935 78..231 -
1622929608.0809975-CDS-H-elongata_contig107935:702..8501622929608.0809975-CDS-H-elongata_contig107935:702..850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107935 703..850 -
1691679089.6980824-CDS-H-elongata_contig107935:702..8501691679089.6980824-CDS-H-elongata_contig107935:702..850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107935 703..850 -
1622929608.096665-CDS-H-elongata_contig107935:1067..11941622929608.096665-CDS-H-elongata_contig107935:1067..1194Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107935 1068..1194 -
1691679089.713323-CDS-H-elongata_contig107935:1067..11941691679089.713323-CDS-H-elongata_contig107935:1067..1194Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107935 1068..1194 -
1622929608.1090837-CDS-H-elongata_contig107935:1562..16701622929608.1090837-CDS-H-elongata_contig107935:1562..1670Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107935 1563..1670 -
1691679089.7230415-CDS-H-elongata_contig107935:1562..16701691679089.7230415-CDS-H-elongata_contig107935:1562..1670Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107935 1563..1670 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig107935.647.1

>prot_H-elongata_contig107935.647.1 ID=prot_H-elongata_contig107935.647.1|Name=mRNA_H-elongata_contig107935.647.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=179bp
LPAALKAWTWKNPQGILVSPLDRRHYRWLVLSNGLQVMVISDPDATKSAA
AISVDVGAASDPQELPGLAHFLEHMLFLGTSKYPAENAYKSYLAKHGGRS
NASTSMDATTFMFEVGAEHLRRGLAQEEGALEIFSQFFVSPLLSESSTGR
ELMAVDSEDSKNRTSDGRRILQVIESST*
back to top

mRNA from alignment at H-elongata_contig107935:78..1670-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig107935.647.1 ID=mRNA_H-elongata_contig107935.647.1|Name=mRNA_H-elongata_contig107935.647.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1593bp|location=Sequence derived from alignment at H-elongata_contig107935:78..1670- (Himanthalia elongata Himel1 dioecious)
CTCCCCGCGGCATTGAAAGCGTGGACATGGAAAAATCCCCAGGGAATCCT CGTGTCTCCCTTGGACCGGCGACATTATCGATGGTTGGTTCTGTCAAACG GGCTGCAGGTAAAGTCAGTGCTGCTGGACACGTCGGACAAAGATGCCACA AGGGCGCAGGAACCGGTTACAGGCGTAGCACTATGTGACATTCCCTATCG ATCGTTTCCGGAGCCCTGGGTGCAATCGGATCACAGCGCGTAGCGCGCGC GATTCATCACGGGATATATCCATCGCCCTGTGGGGATATGGGCGCAACAA CCCTTTTTAGCCAGTGCGCAAAATTATCTGAGAGATACTGGCGCTGGCGC TAATCCCACCCCCATCGTCTTTCGTTCCAACGTACTCTTAACCTCTACTC TCGCGAACTTCTATGCTGTGTGCCGTGTTTCACTGGAACGTTATCCGCGC GCTCTGTGCTCCTCGATGGGGTCAAGGTGATGGTGATCAGCGATCCCGAC GCCACGAAGTCGGCGGCCGCGATATCAGTTGACGTCGGGGCCGCTTCGGA CCCGCAGGAGCTCCCGGGTCTTGCCCACTTCCTGGAGCACATGCTCTTTC TCGGTGAGTCTCCTTATCGAGACGGAACTCCACAGGTTCCTGGTACGAAT CCACCGAACGGCTTATCCCCCACCCCAACCCCTGTGCGGTGTAAACTATG CGAGGGTAGGCGCCGCCGAATCCAGTCTCATACCGGCGATGTCTCGGACG GACAGCTTGATGTTGTTATTGTTTTTGCAGAGATAGTATGTCCTGTAATT TGCAATGTCTGGTTGATCAGGCACCTCCAAGTATCCGGCGGAGAACGCGT ACAAGTCGTATCTGGCGAAGCACGGGGGAAGGAGTAACGCCTCCACGTCC ATGGACGCGACCACATTCATGTTCGAGGTCGGTGCGGAACATCTCAGGCG AGGATTGGCACAGGAAGAGTTTCTATGAAACTCTTATGACAACGTCAACT GAACTGAATTACACGGAAGAGCTCTTTCGTCATTTTGGCGAATTTGGAGT TTCCATCGCCCAGAACAAAAGTGCGGTCGATTCATCTACCGCGGAGGGTA TATGACTGAAAACGTGGCTAACCGTCCTAAATGTACACATAATAGTCTGG GCTTGCATGGCTGGGAGCCCTGTCCGAGTTTGCGTCGAGGATAACGGACG AAAGTCGGCACGCCTGACTCCTGACCTCTATGTGTGTGTCGTCGGGAGGA AATTTTTGCAAGTTGTTTTTCCGTTCCGATAACGCAGAACTCTCACAATC CTTCCGCTAAACTGCACGACACGCCTCCTTTGTTTTCTTCGTTCCGTCCC GTTGCTCGTGGTTTAATTAATATGCCGCGCCGCCCGTGTGTGACGAGCTC CTCTAAAATAACTCATCGATCGCGCCGGTGGCGCCGCAGGGGGGCGTTGG AAATTTTCTCCCAATTCTTCGTGTCGCCACTGCTCTCAGAGAGCAGCACG GGTAGGGAGCTGATGGCGGTGGACAGCGAGGACAGCAAGAACAGGACAAG CGACGGCCGAAGAATCCTCCAGGTGATCGAATCCTCCACGTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig107935:78..1670-

>mRNA_H-elongata_contig107935.647.1 ID=mRNA_H-elongata_contig107935.647.1|Name=mRNA_H-elongata_contig107935.647.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1074bp|location=Sequence derived from alignment at H-elongata_contig107935:78..1670- (Himanthalia elongata Himel1 dioecious)
CTCCCCGCGGCATTGAAAGCGTGGACATGGAAAAATCCCCAGGGAATCCT
CGTGTCTCCCTTGGACCGGCGACATTATCGATGGTTGGTTCTGTCAAACG
GGCTGCAGCTCCCCGCGGCATTGAAAGCGTGGACATGGAAAAATCCCCAG
GGAATCCTCGTGTCTCCCTTGGACCGGCGACATTATCGATGGTTGGTTCT
GTCAAACGGGCTGCAGGTGATGGTGATCAGCGATCCCGACGCCACGAAGT
CGGCGGCCGCGATATCAGTTGACGTCGGGGCCGCTTCGGACCCGCAGGAG
CTCCCGGGTCTTGCCCACTTCCTGGAGCACATGCTCTTTCTCGGTGATGG
TGATCAGCGATCCCGACGCCACGAAGTCGGCGGCCGCGATATCAGTTGAC
GTCGGGGCCGCTTCGGACCCGCAGGAGCTCCCGGGTCTTGCCCACTTCCT
GGAGCACATGCTCTTTCTCGGCACCTCCAAGTATCCGGCGGAGAACGCGT
ACAAGTCGTATCTGGCGAAGCACGGGGGAAGGAGTAACGCCTCCACGTCC
ATGGACGCGACCACATTCATGTTCGAGGTCGGTGCGGAACATCTCAGGCG
AGGATTGGCACAGGAAGAGCACCTCCAAGTATCCGGCGGAGAACGCGTAC
AAGTCGTATCTGGCGAAGCACGGGGGAAGGAGTAACGCCTCCACGTCCAT
GGACGCGACCACATTCATGTTCGAGGTCGGTGCGGAACATCTCAGGCGAG
GATTGGCACAGGAAGAGGGGGCGTTGGAAATTTTCTCCCAATTCTTCGTG
TCGCCACTGCTCTCAGAGAGCAGCACGGGTAGGGAGCTGATGGCGGTGGA
CAGCGAGGACAGCAAGAACAGGACAAGCGACGGCCGAAGAATCCTCCAGG
TGATCGAATCCTCCACGTAGGGGGGCGTTGGAAATTTTCTCCCAATTCTT
CGTGTCGCCACTGCTCTCAGAGAGCAGCACGGGTAGGGAGCTGATGGCGG
TGGACAGCGAGGACAGCAAGAACAGGACAAGCGACGGCCGAAGAATCCTC
CAGGTGATCGAATCCTCCACGTAG
back to top