mRNA_H-elongata_contig107903.645.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig107903.645.1
Unique NamemRNA_H-elongata_contig107903.645.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107903.645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig107903contigH-elongata_contig107903:1406..1754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size270
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig107903.645.1prot_H-elongata_contig107903.645.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig107903 1406..1752 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929607.8266978-CDS-H-elongata_contig107903:1405..16121622929607.8266978-CDS-H-elongata_contig107903:1405..1612Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107903 1406..1612 +
1691679089.5606637-CDS-H-elongata_contig107903:1405..16121691679089.5606637-CDS-H-elongata_contig107903:1405..1612Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107903 1406..1612 +
1622929607.8445773-CDS-H-elongata_contig107903:1689..17521622929607.8445773-CDS-H-elongata_contig107903:1689..1752Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107903 1690..1752 +
1691679089.5717885-CDS-H-elongata_contig107903:1689..17521691679089.5717885-CDS-H-elongata_contig107903:1689..1752Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107903 1690..1752 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929607.8622797-UTR-H-elongata_contig107903:1752..17541622929607.8622797-UTR-H-elongata_contig107903:1752..1754Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig107903 1753..1754 +
1691679089.581421-UTR-H-elongata_contig107903:1752..17541691679089.581421-UTR-H-elongata_contig107903:1752..1754Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig107903 1753..1754 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig107903.645.1

>prot_H-elongata_contig107903.645.1 ID=prot_H-elongata_contig107903.645.1|Name=mRNA_H-elongata_contig107903.645.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
PKAKQSTRTKSQPLSLGGSGVELYNLQKSETYCVVERANVSTLGVSSMLY
RAGDVSRLSASDCKQVRRDQNEKKKRSNQAYFKRVPLNR*
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mRNA from alignment at H-elongata_contig107903:1406..1754+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig107903.645.1 ID=mRNA_H-elongata_contig107903.645.1|Name=mRNA_H-elongata_contig107903.645.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=349bp|location=Sequence derived from alignment at H-elongata_contig107903:1406..1754+ (Himanthalia elongata Himel1 dioecious)
CCGAAAGCAAAACAAAGCACGCGTACGAAGAGTCAACCACTGAGTTTAGG
GGGGAGTGGTGTGGAATTGTATAATTTACAAAAATCGGAGACGTATTGTG
TCGTGGAAAGAGCGAATGTGTCTACTCTCGGGGTCTCTTCGATGCTGTAC
CGAGCGGGGGATGTATCTCGCCTTTCAGCATCAGATTGCAAGCAAGTACG
ACGGGATGTTCACATGGTGTTGCTTCGATTATCGCAGATCGAAGTTACCA
ACGAACGGTTAGAGAGCTTTCGAGAAAGAGAAAGCAAAATGAAAAGAAGA
AACGATCAAACCAAGCTTATTTCAAAAGGGTACCTCTTAATCGATAAAT
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Coding sequence (CDS) from alignment at H-elongata_contig107903:1406..1754+

>mRNA_H-elongata_contig107903.645.1 ID=mRNA_H-elongata_contig107903.645.1|Name=mRNA_H-elongata_contig107903.645.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig107903:1406..1754+ (Himanthalia elongata Himel1 dioecious)
CCGAAAGCAAAACAAAGCACGCGTACGAAGAGTCAACCACTGAGTTTAGG
GGGGAGTGGTGTGGAATTGTATAATTTACAAAAATCGGAGACGTATTGTG
TCGTGGAAAGAGCGAATGTGTCTACTCTCGGGGTCTCTTCGATGCTGTAC
CGAGCGGGGGATGTATCTCGCCTTTCAGCATCAGATTGCAAGCAAGTACG
ACGGGATCCGAAAGCAAAACAAAGCACGCGTACGAAGAGTCAACCACTGA
GTTTAGGGGGGAGTGGTGTGGAATTGTATAATTTACAAAAATCGGAGACG
TATTGTGTCGTGGAAAGAGCGAATGTGTCTACTCTCGGGGTCTCTTCGAT
GCTGTACCGAGCGGGGGATGTATCTCGCCTTTCAGCATCAGATTGCAAGC
AAGTACGACGGGATCAAAATGAAAAGAAGAAACGATCAAACCAAGCTTAT
TTCAAAAGGGTACCTCTTAATCGATAACAAAATGAAAAGAAGAAACGATC
AAACCAAGCTTATTTCAAAAGGGTACCTCTTAATCGATAA
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