mRNA_H-elongata_contig107820.643.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig107820.643.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE) HSP 1 Score: 147 bits (370), Expect = 7.410e-39 Identity = 90/212 (42.45%), Postives = 118/212 (55.66%), Query Frame = 1
Query: 1 DIMKFHQVLGHPAEQITRNTARMAGVQLSR-IWRPCVHCSESRVRRYAVPKSTENQADRRAGRLFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVHFLKHKSDATNALRDIINDYFAPE-DLKIGVIRTDGGGE*HGQFLSFLSELGIKRESTPPYTPQYNGVVERALRLLRDKTVALLRGVMQGK--------SKRLWAEAMAYACDMWN 606
D+ H GH E++ + TA+ GVQL+ PC+ CS S+ + + KST+ +A + RLF+NL G S+GGN + ++ DD TR+ V FLKHKSDA A + DY A ++ V RTDGGGE GQF GIK+E TPP TP+YNGV ERAL LL D +A +Q K S LWAEA++ AC N
Sbjct: 134 DLNSDHNSHGHTHEELLQKTAKQQGVQLTGGPLLPCLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALA---SRIQAKEMFPDAPVSPGLWAEAISCACHQMN 342
BLAST of mRNA_H-elongata_contig107820.643.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE) HSP 1 Score: 135 bits (341), Expect = 2.550e-33 Identity = 84/212 (39.62%), Postives = 114/212 (53.77%), Query Frame = 1
Query: 1 DIMKFHQVLGHPAEQITRNTARMAGVQLSR-IWRPCVHCSESRVRRYAVPKSTENQADRRAGRLFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVHFLKHKSDATNALRDIINDYFAPE-DLKIGVIRTDGGGE*HGQFLSFLSELGIKRESTPPYTPQYNGVVERALRLLRDKTVALLRGVMQGKS--------KRLWAEAMAYACDMWN 606
D+ ++H G E + R TA GVQL+ PC+ CS S + V KST +A ++ R++++L G S+GGN + ++ DDF+R+ V FLKHKSDA L + DY ++ + RTDGGGE GQF GIK+E TPP+TP+YNGV ERAL L T A L +Q LWAEA++ AC N
Sbjct: 585 DLNEYHLAHGQARETLLRITAEQQGVQLTDGPLLPCLGCSMSTGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGLEKFLADYRTKGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLN 796
BLAST of mRNA_H-elongata_contig107820.643.1 vs. uniprot
Match: A0A6H5JAQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ2_9PHAE) HSP 1 Score: 134 bits (338), Expect = 6.480e-33 Identity = 83/212 (39.15%), Postives = 112/212 (52.83%), Query Frame = 1
Query: 1 DIMKFHQVLGHPAEQITRNTARMAGVQLSR-IWRPCVHCSESRVRRYAVPKSTENQADRRAGRLFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVHFLKHKSDATNALRDIINDYFAP----EDLKIGVIRTDGGGE*HGQFLSFLSELGIKRESTPPYTPQYNGVVERALRLLRDKTVALLRGVMQ-----GKSKRLWAEAMAYACDMWN 606
D+ ++H GH E + R TA GVQL+ PC+ CS S+ + V K T +A + R++++L G S+GGN + ++ DDF+R+ V FLKHKSDA + DY ED + R DGGGE GQF GIK+E TPP+TP+YNGV ERAL L+ D +A Q LWAEA++ AC N
Sbjct: 640 DLNEYHLAHGHAHETLLRITAEQQGVQLTDGPLLPCLGCSMSKAQVKPVQKCTSTRAVQNFFRVYLDLEGTMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTNGVPCEDF---IARADGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLN 848
BLAST of mRNA_H-elongata_contig107820.643.1 vs. uniprot
Match: A0A6H5KPZ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPZ8_9PHAE) HSP 1 Score: 133 bits (335), Expect = 1.250e-32 Identity = 81/205 (39.51%), Postives = 111/205 (54.15%), Query Frame = 1
Query: 1 DIMKFHQVLGHPAEQITRNTARMAGVQLSR-IWRPCVHCSESRVRRYAVPKSTENQADRRAGRLFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVHFLKHKSDATNALRDIINDYFAPE-DLKIGVIRTDGGGE*HGQFLSFLSELGIKRESTPPYTPQYNGVVERALRLLRDKTVALLRGVMQ-----GKSKRLWAEAMAYAC 594
D+ ++H GH E + R TA GVQL+ PC+ CS S+ + V KST ++A + R++++L G S+GGN + ++ DDF+R+ V FLKHKSDA + DY K+ + RTDGGGE GQF GIK+E TPP+TP Y V ERAL L+ D +A Q LWAEA++ AC
Sbjct: 421 DLNEYHLAHGHAHETLLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKSTSSRAVTKIFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTEGVPCKVYIARTDGGGEFQGQFAEVCRRHGIKQELTPPHTPIYKDVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCAC 625
BLAST of mRNA_H-elongata_contig107820.643.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE) HSP 1 Score: 132 bits (332), Expect = 4.040e-32 Identity = 81/213 (38.03%), Postives = 116/213 (54.46%), Query Frame = 1
Query: 1 DIMKFHQVLGHPAEQITRNTARMAGVQLSRIWRPCVHCSESRVRRYAVPKSTENQADRRAGRLFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVHFLKHKSDATNALRDIINDYFA---PEDLKIGVIRTDGGGE*-HGQFLSFLSELGIKRESTPPYTPQYNGVVERALRLLRDKTVA-------LLRGVMQGKSKRLWAEAMAYACDMWN 606
DI FH GH E + R TA+ G L R C+ CS ++ +P T +A ++ R F+ LSG SLGG + ++ DD+TR+ V+FLKHKSDA A + + A P D+ V+R+D GGE G+F + IK+E TP ++P+YNGV ERAL L++D +A L G +S LWAEA+A++C+ N
Sbjct: 307 DINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSEPIPNKTSTRAFKKLQRFFVELSGKARAQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLKEKRADGAPSDVM--VVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAAIAARIQAPTLYPGAPNYRS--LWAEAIAWSCNALN 515
BLAST of mRNA_H-elongata_contig107820.643.1 vs. uniprot
Match: A0A6H5L1A7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A7_9PHAE) HSP 1 Score: 130 bits (326), Expect = 1.860e-31 Identity = 81/212 (38.21%), Postives = 111/212 (52.36%), Query Frame = 1
Query: 1 DIMKFHQVLGHPAEQITRNTARMAGVQLSR-IWRPCVHCSESRVRRYAVPKSTENQADRRAGRLFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVHFLKHKSDATNALRDIINDYFAPE-DLKIGVIRTDGGGE*HGQFLSFLSELGIKRESTPPYTPQYNGVVERALRLLRDKTVALLRGVMQGKS--------KRLWAEAMAYACDMWN 606
D+ ++H GH E + R TA GVQL+ PC+ CS S+ + V K T +A ++ R++++L G S+GGN + ++ DDF+R+ FLKHKSDA + DY ++ RTDGGGE GQF GIK E TPP+TP+YN V ERAL L+ D A L +Q K LW EA++ AC N
Sbjct: 131 DLNEYHLAHGHAHETLLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKGTSTRAVKKLCRVYLDLEGKMKTRSIGGNWYKLIIRDDFSRWTRGFFLKHKSDAAIGFEKFLADYRTKGIPCEVYFARTDGGGEFQGQFAEVCRRHGIKEEFTPPHTPKYNSVAERALGLITD---AALASRIQAKQLYPDAPNHPGLWTEAISCACHQLN 339
BLAST of mRNA_H-elongata_contig107820.643.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 130 bits (326), Expect = 2.680e-31 Identity = 81/213 (38.03%), Postives = 117/213 (54.93%), Query Frame = 1
Query: 1 DIMKFHQVLGHPAEQITRNTARMAGVQLSRIWRPCVHCSESRVRRYAVPKSTENQADRRAGRLFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVHFLKHKSDATNALRDIINDYFA---PEDLKIGVIRTDGGGE*-HGQFLSFLSELGIKRESTPPYTPQYNGVVERALRLLRDKTVA-------LLRGVMQGKSKRLWAEAMAYACDMWN 606
DI FH GH E + R TA+ G L R C+ CS ++ +P T +A ++ R+F++LSG SLGG + ++ DD+TR+ V+FLKHKSDA A + + A P D+ V+R+D GGE G+F + IK+E TP ++P+YNGV ERAL L++D +A L G S LWAEA+A++C+ N
Sbjct: 509 DINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVM--VVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALN 717
BLAST of mRNA_H-elongata_contig107820.643.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 130 bits (326), Expect = 2.690e-31 Identity = 81/213 (38.03%), Postives = 117/213 (54.93%), Query Frame = 1
Query: 1 DIMKFHQVLGHPAEQITRNTARMAGVQLSRIWRPCVHCSESRVRRYAVPKSTENQADRRAGRLFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVHFLKHKSDATNALRDIINDYFA---PEDLKIGVIRTDGGGE*-HGQFLSFLSELGIKRESTPPYTPQYNGVVERALRLLRDKTVA-------LLRGVMQGKSKRLWAEAMAYACDMWN 606
DI FH GH E + R TA+ G L R C+ CS ++ +P T +A ++ R+F++LSG SLGG + ++ DD+TR+ V+FLKHKSDA A + + A P D+ V+R+D GGE G+F + IK+E TP ++P+YNGV ERAL L++D +A L G S LWAEA+A++C+ N
Sbjct: 522 DINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVM--VVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALN 730
BLAST of mRNA_H-elongata_contig107820.643.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 130 bits (326), Expect = 2.700e-31 Identity = 81/213 (38.03%), Postives = 117/213 (54.93%), Query Frame = 1
Query: 1 DIMKFHQVLGHPAEQITRNTARMAGVQLSRIWRPCVHCSESRVRRYAVPKSTENQADRRAGRLFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVHFLKHKSDATNALRDIINDYFA---PEDLKIGVIRTDGGGE*-HGQFLSFLSELGIKRESTPPYTPQYNGVVERALRLLRDKTVA-------LLRGVMQGKSKRLWAEAMAYACDMWN 606
DI FH GH E + R TA+ G L R C+ CS ++ +P T +A ++ R+F++LSG SLGG + ++ DD+TR+ V+FLKHKSDA A + + A P D+ V+R+D GGE G+F + IK+E TP ++P+YNGV ERAL L++D +A L G S LWAEA+A++C+ N
Sbjct: 665 DINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVM--VVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALN 873
BLAST of mRNA_H-elongata_contig107820.643.1 vs. uniprot
Match: A0A6H5JIN8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN8_9PHAE) HSP 1 Score: 127 bits (319), Expect = 1.370e-30 Identity = 80/209 (38.28%), Postives = 110/209 (52.63%), Query Frame = 1
Query: 1 DIMKFHQVLGHPAEQITRNTARMAGVQLSR-IWRPCVHCSESRVRRYAVPKSTENQADRRAGRLFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVHFLKHKSDATNALRDIINDYFAPE-DLKIGVIRTDGGGE*HGQFLSFLSELGIKRESTPPYTPQYNGVVERALRLLRDKTVALLRGVMQ-----GKSKRLWAEAMAYACDMWN 606
D+ +H GH E + R TA GVQL+ PC+ CS S+ + V KST +A ++ R++++L G S+GGN + ++ DD +R+ V F H SDA + DY K+ + RTDGGGE GQF GIK+E TPP+TP+YNGV ERAL L+ D +A Q LWAEA++ AC N
Sbjct: 339 DLNGYHPAHGHANETLLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDCSRWTCVFFFNH-SDAAVGFEKSLADYRTKGVPCKVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLN 546 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107820.643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig107820.643.1 >prot_H-elongata_contig107820.643.1 ID=prot_H-elongata_contig107820.643.1|Name=mRNA_H-elongata_contig107820.643.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp MKFHQVLGHPAEQITRNTARMAGVQLSRIWRPCVHCSESRVRRYAVPKSTback to top mRNA from alignment at H-elongata_contig107820:419..1024+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig107820.643.1 ID=mRNA_H-elongata_contig107820.643.1|Name=mRNA_H-elongata_contig107820.643.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=606bp|location=Sequence derived from alignment at H-elongata_contig107820:419..1024+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig107820:419..1024+ >mRNA_H-elongata_contig107820.643.1 ID=mRNA_H-elongata_contig107820.643.1|Name=mRNA_H-elongata_contig107820.643.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig107820:419..1024+ (Himanthalia elongata Himel1 dioecious)back to top |