prot_H-elongata_contig10780.641.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig10780.641.1
Unique Name	prot_H-elongata_contig10780.641.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	114

Homology

[Close]

BLAST of mRNA_H-elongata_contig10780.641.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.610e-21
Identity = 49/115 (42.61%), Postives = 70/115 (60.87%), Query Frame = 0

Query:    1 MPRFLGDLVHGTEVGDVLHFDYLSLGESEAIDMGGLFDR-GYKHVLVLMDDVSLFDWLEEAVSCSMEVAARAVLKRCASFGVPKAFTSDGGTHFTGQVMQMVSSRLGVLHYFGVA 114
            +PR  G+ VHG   G+VLHFDYL +G+S  +   GL +  GY ++LV+MDD+S F W+E   +C+  + A+ +L  C + GVP+ + SD  THF   VM  +   LGV   F VA
Sbjct:   24 VPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVA 138

[Close]

BLAST of mRNA_H-elongata_contig10780.641.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.930e-21
Identity = 49/115 (42.61%), Postives = 70/115 (60.87%), Query Frame = 0

Query:    1 MPRFLGDLVHGTEVGDVLHFDYLSLGESEAIDMGGLFDR-GYKHVLVLMDDVSLFDWLEEAVSCSMEVAARAVLKRCASFGVPKAFTSDGGTHFTGQVMQMVSSRLGVLHYFGVA 114
            +PR  G+ VHG   G+VLHFDYL +G+S  +   GL +  GY ++LV+MDD+S F W+E   +C+  + A+ +L  C + GVP+ + SD  THF   VM  +   LGV   F VA
Sbjct:  471 VPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVA 585

[Close]

BLAST of mRNA_H-elongata_contig10780.641.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 3.070e-21
Identity = 49/115 (42.61%), Postives = 70/115 (60.87%), Query Frame = 0

Query:    1 MPRFLGDLVHGTEVGDVLHFDYLSLGESEAIDMGGLFDR-GYKHVLVLMDDVSLFDWLEEAVSCSMEVAARAVLKRCASFGVPKAFTSDGGTHFTGQVMQMVSSRLGVLHYFGVA 114
            +PR  G+ VHG   G+VLHFDYL +G+S  +   GL +  GY ++LV+MDD+S F W+E   +C+  + A+ +L  C + GVP+ + SD  THF   VM  +   LGV   F VA
Sbjct: 1247 VPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVA 1361

[Close]

BLAST of mRNA_H-elongata_contig10780.641.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 6.880e-20
Identity = 48/115 (41.74%), Postives = 72/115 (62.61%), Query Frame = 0

Query:    1 MPRFLGDLVHGTEVGDVLHFDYLSLGESEAIDMGGLFDR-GYKHVLVLMDDVSLFDWLEEAVSCSMEVAARAVLKRCASFGVPKAFTSDGGTHFTGQVMQMVSSRLGVLHYFGVA 114
            +PR LG+ VHGT  G+V+HFDYL +G S  +   GL +  G+K++LV+MDD+S + WLE   +C+  + A+ +L  C   GVP+ + SD  +HF   +M  + + LGV   F VA
Sbjct: 1349 VPRPLGETVHGTRPGEVVHFDYLYVGASGPLGDDGLDEEEGFKYILVMMDDMSNWVWLEPTGACTACLTAQHLLTWCKILGVPEVWVSDTASHFKNHMMAALETALGVDRNFSVA 1463

[Close]

BLAST of mRNA_H-elongata_contig10780.641.1 vs. uniprot
Match: A0A6H5J9M0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9M0_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 5.660e-14
Identity = 34/89 (38.20%), Postives = 57/89 (64.04%), Query Frame = 0

Query:    1 MPRFLGDLVHGTEVGDVLHFDYLSLGESEAIDMGGLFDR-GYKHVLVLMDDVSLFDWLEEAVSCSMEVAARAVLKRCASFGVPKAFTSD 88
            +P+ LG+  HGT  G+V+ FDYL +G S  +    L +  G+K++LV+MDD+S + WLE   +C+  + ++ +L  C + GVP+ + SD
Sbjct:   24 VPQPLGETAHGTRPGEVVLFDYLYVGASGLLGKDSLDEEDGFKYILVMMDDMSNWVWLEPTGACTARLTSQHLLTWCKTLGVPEVWVSD 112

[Close]

BLAST of mRNA_H-elongata_contig10780.641.1 vs. uniprot
Match: A0A0G4IIR3_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IIR3_PLABS)

HSP 1 Score: 68.6 bits (166), Expect = 3.660e-11
Identity = 40/113 (35.40%), Postives = 58/113 (51.33%), Query Frame = 0

Query:    2 PRFLGDLVHGTEVGDVLHFDYLSLGESEAIDMGGLFDRGYKHVLVLMDDVSLFDWLEEAVSCSMEVAARAVLKRCASFGVPKAFTSDGGTHFTGQVMQMVSSRLGVLHYFGVA 114
            PR LG  VHG E   VLH DY+ +      D        YK++L+L DD S    L    + +   AA +++   A FG P+   +DGG+HFT +VM+ +S    V H+  +A
Sbjct:   33 PRPLGQAVHGHERFQVLHMDYMYVEPVRGAD------HDYKYILLLKDDFSGLVRLIPCTNATARTAADSLMAWIADFGTPEILVTDGGSHFTAEVMEDLSRLRHVAHHITLA 139

[Close]

BLAST of mRNA_H-elongata_contig10780.641.1 vs. uniprot
Match: A0A6A3JAA2_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3JAA2_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 6.930e-11
Identity = 44/111 (39.64%), Postives = 63/111 (56.76%), Query Frame = 0

Query:    1 MPRFLGDLVHGTEVGDVLHFDYLSLGESEAIDMGGLFDRGYKHVLVLMDDVSLFDWLEEAVSCSMEVAARAVLKRCASFGVPKAFTSDGGTHFTGQVMQMVSSRLGVLHYF 111
            +PR  G L+  TE  +V+H+D+LSLGE       G  D  Y  +LV+ D +S F  L    +  + VAA A+L   A +G+PK   SD GTHF  ++M+ ++SRL V   F
Sbjct:  110 IPRPYGPLLTPTERNEVVHWDFLSLGE-------GYGDPAY--LLVVKDGLSHFCELFPCATSIVYVAAEALLMWAARYGIPKTLLSDQGTHFRNEMMRHMASRLKVEQNF 211

[Close]

BLAST of mRNA_H-elongata_contig10780.641.1 vs. uniprot
Match: A0A0G4J8M9_PLABS (Integrase catalytic domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J8M9_PLABS)

HSP 1 Score: 66.2 bits (160), Expect = 2.530e-10
Identity = 39/114 (34.21%), Postives = 60/114 (52.63%), Query Frame = 0

Query:    1 MPRFLGDLVHGTEVGDVLHFDYLSLGESEAIDMGGLFDRGYKHVLVLMDDVSLFDWLEEAVSCSMEVAARAVLKRCASFGVPKAFTSDGGTHFTGQVMQMVSSRLGVLHYFGVA 114
            +PR LG+ +HG +  DVL  DYL +      D        YK++L+L DD S +  L  +   +  VAA A+ +  A F  P+   +DGG+HFT +VM+ ++    V H+   A
Sbjct:  662 VPRPLGEALHGHQPFDVLTMDYLYVEPVRGAD------HKYKYILLLKDDFSGYVRLIPSAEATSRVAAEALNQWIADFATPEYLVTDGGSHFTAEVMEELTRLRDVQHHITTA 769

[Close]

BLAST of mRNA_H-elongata_contig10780.641.1 vs. uniprot
Match: A0A0G4IKA6_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IKA6_PLABS)

HSP 1 Score: 63.9 bits (154), Expect = 1.540e-9
Identity = 37/114 (32.46%), Postives = 59/114 (51.75%), Query Frame = 0

Query:    1 MPRFLGDLVHGTEVGDVLHFDYLSLGESEAIDMGGLFDRGYKHVLVLMDDVSLFDWLEEAVSCSMEVAARAVLKRCASFGVPKAFTSDGGTHFTGQVMQMVSSRLGVLHYFGVA 114
            +PR LG+ +HG +  DVL  DYL +      D        YK++L+L DD S +  L  +   +  VA  A+ +  A F  P+   +DGG+HFT ++M+ ++    V H+   A
Sbjct:   34 VPRPLGEALHGHKPFDVLTMDYLYVEPVRGTD------HQYKYILLLKDDFSGYVRLIPSAEATSRVATEALNQWIADFATPEYLVTDGGSHFTAEIMEELTRLRDVQHHITTA 141

[Close]

BLAST of mRNA_H-elongata_contig10780.641.1 vs. uniprot
Match: A0A6A3GU43_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GU43_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.870e-9
Identity = 37/114 (32.46%), Postives = 60/114 (52.63%), Query Frame = 0

Query:    1 MPRFLGDLVHGTEVGDVLHFDYLSLGESEAIDMGGLFDRGYKHVLVLMDDVSLFDWLEEAVSCSMEVAARAVLKRCASFGVPKAFTSDGGTHFTGQVMQMVSSRLGVLHYFGVA 114
            +PR  G+ +  T+  ++LHFDYL++ ESE+         G K+VLVL D++S +  L    + + +     ++     FGV   + SD G HF  QV++ +   LG  H+F  A
Sbjct:  165 IPRPFGETLRATKPNEILHFDYLTMVESES---------GLKYVLVLKDNMSGYVGLIACPNPTADYVYTGLMDWFKRFGVVLQWVSDQGVHFRNQVIERLQRALGAQHHFTTA 269

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig10780.641.1 vs. uniprot

BLAST of mRNA_H-elongata_contig10780.641.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JVS6_9PHAE	1.610e-21	42.61	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JCX8_9PHAE	2.930e-21	42.61	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5L7F6_9PHAE	3.070e-21	42.61	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K5A5_9PHAE	6.880e-20	41.74	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J9M0_9PHAE	5.660e-14	38.20	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A0G4IIR3_PLABS	3.660e-11	35.40	Uncharacterized protein n=1 Tax=Plasmodiophora bra...	[more]
A0A6A3JAA2_9STRA	6.930e-11	39.64	Uncharacterized protein n=4 Tax=Phytophthora TaxID...	[more]
A0A0G4J8M9_PLABS	2.530e-10	34.21	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A0G4IKA6_PLABS	1.540e-9	32.46	Uncharacterized protein n=1 Tax=Plasmodiophora bra...	[more]
A0A6A3GU43_9STRA	2.870e-9	32.46	Integrase catalytic domain-containing protein n=1 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 16..114 e-value: 1.4E-11 score: 45.9
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..114 score: 11.762
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 12..112

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig10780	contig	H-elongata_contig10780:4765..5106 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig10780.641.1	mRNA_H-elongata_contig10780.641.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig10780 3660..5106 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig10780.641.1 ID=prot_H-elongata_contig10780.641.1|Name=mRNA_H-elongata_contig10780.641.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
MPRFLGDLVHGTEVGDVLHFDYLSLGESEAIDMGGLFDRGYKHVLVLMDD
VSLFDWLEEAVSCSMEVAARAVLKRCASFGVPKAFTSDGGTHFTGQVMQM
VSSRLGVLHYFGVA

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR001584	Integrase_cat-core
IPR012337	RNaseH-like_sf