mRNA_H-elongata_contig107749.637.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig107749.637.1
Unique NamemRNA_H-elongata_contig107749.637.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig107749.637.1 vs. uniprot
Match: D7FL84_ECTSI (Similar to aldehyde oxidase 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL84_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 3.700e-40
Identity = 62/83 (74.70%), Postives = 72/83 (86.75%), Query Frame = 1
Query:    7 DRVGPTDSPRNHLVFYVNGAKHVVKDAQPQTTLLQYLRRVGMTGTKLGCGEGGCGACTVMISAFDYVRREIKHASVNACLAPL 255
            D  G T   RNHLVF+VNGAK VVKDAQPQTTLLQ+LR  G+TGTKLGCGEGGCGACTVM+S+FD  +++IKHA+VNACLAP+
Sbjct:    7 DAAGDTQGTRNHLVFFVNGAKQVVKDAQPQTTLLQHLRAAGLTGTKLGCGEGGCGACTVMVSSFDSDKKQIKHAAVNACLAPV 89          
BLAST of mRNA_H-elongata_contig107749.637.1 vs. uniprot
Match: A0A6H5JRC2_9PHAE (Xanthine dehydrogenase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC2_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 6.210e-34
Identity = 59/76 (77.63%), Postives = 71/76 (93.42%), Query Frame = 1
Query:   34 RNHLVFYVNGAKHVVKDAQPQTTLLQYLRRVGMTGTKLGCGEGGCGACTVMISAFDYVRREIKHASVNACLAPLVS 261
            R+HL+F+VNGAK VVKDAQPQTTLLQ+LR VG+TGTKLGCGEGGCGACTVM+S+FD  +++IKHA+VNACLAP+ S
Sbjct:   18 RDHLIFFVNGAKQVVKDAQPQTTLLQHLRAVGLTGTKLGCGEGGCGACTVMVSSFDAEKKQIKHAAVNACLAPVCS 93          
BLAST of mRNA_H-elongata_contig107749.637.1 vs. uniprot
Match: D7G4V3_ECTSI (Xanthine dehydrogenase n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G4V3_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 2.200e-33
Identity = 59/76 (77.63%), Postives = 70/76 (92.11%), Query Frame = 1
Query:   34 RNHLVFYVNGAKHVVKDAQPQTTLLQYLRRVGMTGTKLGCGEGGCGACTVMISAFDYVRREIKHASVNACLAPLVS 261
            R+HLVF+VNGAK VVKDAQPQTTLLQ+LR VG+TGTKLGCGEGGCGACTVM+S+FD  +++I HA+VNACLAP+ S
Sbjct:   18 RDHLVFFVNGAKQVVKDAQPQTTLLQHLRAVGLTGTKLGCGEGGCGACTVMVSSFDSEKKQITHAAVNACLAPMCS 93          
BLAST of mRNA_H-elongata_contig107749.637.1 vs. uniprot
Match: A0A836C8N1_9STRA (Xanthine dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8N1_9STRA)

HSP 1 Score: 121 bits (303), Expect = 5.210e-30
Identity = 53/80 (66.25%), Postives = 68/80 (85.00%), Query Frame = 1
Query:   22 TDSPRNHLVFYVNGAKHVVKDAQPQTTLLQYLRRVGMTGTKLGCGEGGCGACTVMISAFDYVRREIKHASVNACLAPLVS 261
            +D  R+HLVF+VNG + VVKDAQP+ TLL +LR  G+TGTKLGCGEGGCGACTVM+S++D+  + I+HA+VNACLAP+ S
Sbjct:    2 SDDVRDHLVFFVNGKRQVVKDAQPEVTLLSWLRASGLTGTKLGCGEGGCGACTVMVSSYDHGAKTIRHAAVNACLAPICS 81          
BLAST of mRNA_H-elongata_contig107749.637.1 vs. uniprot
Match: A0A544ZRC2_9PEZI (2Fe-2S ferredoxin-type domain-containing protein (Fragment) n=1 Tax=Golovinomyces magnicellulatus TaxID=62714 RepID=A0A544ZRC2_9PEZI)

HSP 1 Score: 110 bits (274), Expect = 6.070e-28
Identity = 51/84 (60.71%), Postives = 65/84 (77.38%), Query Frame = 1
Query:   22 TDSPRNHLVFYVNGAKHVVKDAQPQTTLLQYLRRVGMTGTKLGCGEGGCGACTVMISAFDYVRREIKHASVNACLAPLVSHSGK 273
            T S  + L FY+NG K V+ +  P+ T+L+YLR +G+TGTKLGCGEGGCGACT+++S F+   +EI HASVNACLAPLVS  GK
Sbjct:   21 TSSFDDSLRFYLNGTKVVLDNIDPEITVLEYLRGIGLTGTKLGCGEGGCGACTIVVSQFNPTTKEIYHASVNACLAPLVSLDGK 104          
BLAST of mRNA_H-elongata_contig107749.637.1 vs. uniprot
Match: A0A4U0WDV4_9PEZI (Xanthine dehydrogenase n=1 Tax=Cryomyces minteri TaxID=331657 RepID=A0A4U0WDV4_9PEZI)

HSP 1 Score: 107 bits (267), Expect = 1.400e-27
Identity = 49/77 (63.64%), Postives = 61/77 (79.22%), Query Frame = 1
Query:   43 LVFYVNGAKHVVKDAQPQTTLLQYLRRVGMTGTKLGCGEGGCGACTVMISAFDYVRREIKHASVNACLAPLVSHSGK 273
            L FY+NG K V+  A P+ TLL+YLR +G+TGTKLGC EGGCGACTV++S ++   ++I HASVNACLAPLVS  GK
Sbjct:   29 LRFYLNGTKVVLDSADPEVTLLEYLRGIGLTGTKLGCAEGGCGACTVVVSQYNPTTKKIYHASVNACLAPLVSVDGK 105          
BLAST of mRNA_H-elongata_contig107749.637.1 vs. uniprot
Match: A0A084GFF7_PSEDA (Xanthine dehydrogenase n=1 Tax=Pseudallescheria apiosperma TaxID=563466 RepID=A0A084GFF7_PSEDA)

HSP 1 Score: 113 bits (282), Expect = 3.560e-27
Identity = 50/77 (64.94%), Postives = 64/77 (83.12%), Query Frame = 1
Query:   43 LVFYVNGAKHVVKDAQPQTTLLQYLRRVGMTGTKLGCGEGGCGACTVMISAFDYVRREIKHASVNACLAPLVSHSGK 273
            L FY+NG + V++D  P+ TLL+YLR +G+TGTKLGCGEGGCGACTV+IS +++  ++I HASVNACLAPLVS  GK
Sbjct:   26 LTFYLNGTRVVLEDVDPEITLLEYLRGIGLTGTKLGCGEGGCGACTVVISQYNHTTKKIYHASVNACLAPLVSVDGK 102          
BLAST of mRNA_H-elongata_contig107749.637.1 vs. uniprot
Match: A0A507CVT4_9FUNG (Xanthine dehydrogenase n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507CVT4_9FUNG)

HSP 1 Score: 112 bits (281), Expect = 4.860e-27
Identity = 50/84 (59.52%), Postives = 64/84 (76.19%), Query Frame = 1
Query:   22 TDSPRNHLVFYVNGAKHVVKDAQPQTTLLQYLRRVGMTGTKLGCGEGGCGACTVMISAFDYVRREIKHASVNACLAPLVSHSGK 273
            T + +N L FY+NG    V +  PQ  L++YLRR G+TGTKLGCGEGGCG+CTV++S++D V R I HAS+N+CLAPLVS  GK
Sbjct:    3 TPAKKNQLKFYLNGKPKTVNNPNPQEPLIEYLRRTGLTGTKLGCGEGGCGSCTVVVSSYDVVTRRIVHASMNSCLAPLVSVEGK 86          
BLAST of mRNA_H-elongata_contig107749.637.1 vs. uniprot
Match: A0A2N3N3P4_9PEZI (Xanthine dehydrogenase n=1 Tax=Lomentospora prolificans TaxID=41688 RepID=A0A2N3N3P4_9PEZI)

HSP 1 Score: 112 bits (281), Expect = 4.860e-27
Identity = 49/77 (63.64%), Postives = 64/77 (83.12%), Query Frame = 1
Query:   43 LVFYVNGAKHVVKDAQPQTTLLQYLRRVGMTGTKLGCGEGGCGACTVMISAFDYVRREIKHASVNACLAPLVSHSGK 273
            L FY+NG + V++D  P+ TLL+YLR +G+TGTKLGCGEGGCGACTV++S +++  ++I HASVNACLAPLVS  GK
Sbjct:   26 LTFYLNGTRVVLEDVDPEITLLEYLRGIGLTGTKLGCGEGGCGACTVVVSQYNHTTKKIYHASVNACLAPLVSVDGK 102          
BLAST of mRNA_H-elongata_contig107749.637.1 vs. uniprot
Match: A0A507DK22_9FUNG (Xanthine dehydrogenase n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DK22_9FUNG)

HSP 1 Score: 112 bits (281), Expect = 4.860e-27
Identity = 50/84 (59.52%), Postives = 64/84 (76.19%), Query Frame = 1
Query:   22 TDSPRNHLVFYVNGAKHVVKDAQPQTTLLQYLRRVGMTGTKLGCGEGGCGACTVMISAFDYVRREIKHASVNACLAPLVSHSGK 273
            T + +N L FY+NG    V +  PQ  L++YLRR G+TGTKLGCGEGGCG+CTV++S++D V R I HAS+N+CLAPLVS  GK
Sbjct:    3 TPAKKNQLKFYLNGKPKTVNNPNPQEPLIEYLRRTGLTGTKLGCGEGGCGSCTVVVSSYDVVTRRIVHASMNSCLAPLVSVEGK 86          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107749.637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL84_ECTSI3.700e-4074.70Similar to aldehyde oxidase 3 n=1 Tax=Ectocarpus s... [more]
A0A6H5JRC2_9PHAE6.210e-3477.63Xanthine dehydrogenase n=1 Tax=Ectocarpus sp. CCAP... [more]
D7G4V3_ECTSI2.200e-3377.63Xanthine dehydrogenase n=3 Tax=Ectocarpus TaxID=28... [more]
A0A836C8N1_9STRA5.210e-3066.25Xanthine dehydrogenase n=1 Tax=Tribonema minus Tax... [more]
A0A544ZRC2_9PEZI6.070e-2860.712Fe-2S ferredoxin-type domain-containing protein (... [more]
A0A4U0WDV4_9PEZI1.400e-2763.64Xanthine dehydrogenase n=1 Tax=Cryomyces minteri T... [more]
A0A084GFF7_PSEDA3.560e-2764.94Xanthine dehydrogenase n=1 Tax=Pseudallescheria ap... [more]
A0A507CVT4_9FUNG4.860e-2759.52Xanthine dehydrogenase n=1 Tax=Synchytrium endobio... [more]
A0A2N3N3P4_9PEZI4.860e-2763.64Xanthine dehydrogenase n=1 Tax=Lomentospora prolif... [more]
A0A507DK22_9FUNG4.860e-2759.52Xanthine dehydrogenase n=1 Tax=Synchytrium endobio... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig107749contigH-elongata_contig107749:372..644 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.8
Seed ortholog evalue6.3e-31
Seed eggNOG ortholog2880.D7G4V2
KEGG rclassRC00143,RC02017,RC02199
KEGG koko:K00106
KEGG ReactionR01768,R01769,R02103,R02107,R07942,R07977,R07978,R07979,R08235
KEGG Pathwayko00230,ko00232,ko00983,ko01100,ko01110,ko01120,ko04146,map00230,map00232,map00983,map01100,map01110,map01120,map04146
KEGG ModuleM00546
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004854,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006144,GO:0006145,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009112,GO:0009115,GO:0009987,GO:0016491,GO:0016725,GO:0016726,GO:0016903,GO:0019439,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0043546,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046110,GO:0046113,GO:0046483,GO:0046700,GO:0048037,GO:0050660,GO:0050662,GO:0051536,GO:0051537,GO:0051540,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0072523,GO:0097159,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.Xanthine dehydrogenase
EggNOG OGsCOG4631@1,KOG0430@2759
EC1.17.1.4,1.17.3.2
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog description2Fe-2S ferredoxin-type domain
Ec32 orthologEc-00_002570.1
Exons1
Model size273
Cds size273
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929607.0242436-CDS-H-elongata_contig107749:371..6441622929607.0242436-CDS-H-elongata_contig107749:371..644Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107749 372..644 -
1691679089.1579523-CDS-H-elongata_contig107749:371..6441691679089.1579523-CDS-H-elongata_contig107749:371..644Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107749 372..644 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig107749.637.1prot_H-elongata_contig107749.637.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig107749 372..644 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig107749.637.1

>prot_H-elongata_contig107749.637.1 ID=prot_H-elongata_contig107749.637.1|Name=mRNA_H-elongata_contig107749.637.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
MIDRVGPTDSPRNHLVFYVNGAKHVVKDAQPQTTLLQYLRRVGMTGTKLG
CGEGGCGACTVMISAFDYVRREIKHASVNACLAPLVSHSGK
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mRNA from alignment at H-elongata_contig107749:372..644-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig107749.637.1 ID=mRNA_H-elongata_contig107749.637.1|Name=mRNA_H-elongata_contig107749.637.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=273bp|location=Sequence derived from alignment at H-elongata_contig107749:372..644- (Himanthalia elongata Himel1 dioecious)
ATGATCGATCGAGTTGGACCGACCGACAGTCCGAGGAACCATCTCGTCTT CTACGTCAACGGCGCGAAGCACGTGGTCAAAGATGCCCAGCCCCAGACGA CGCTATTACAGTATCTCCGCCGAGTCGGCATGACGGGCACCAAGCTAGGA TGTGGCGAGGGGGGCTGCGGGGCCTGTACAGTAATGATATCGGCGTTCGA CTACGTCCGGAGGGAGATCAAACACGCTTCGGTCAATGCTTGCCTGGCAC CTTTGGTGAGTCACTCAGGAAAA
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Coding sequence (CDS) from alignment at H-elongata_contig107749:372..644-

>mRNA_H-elongata_contig107749.637.1 ID=mRNA_H-elongata_contig107749.637.1|Name=mRNA_H-elongata_contig107749.637.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig107749:372..644- (Himanthalia elongata Himel1 dioecious)
ATGATCGATCGAGTTGGACCGACCGACAGTCCGAGGAACCATCTCGTCTT
CTACGTCAACGGCGCGAAGCACGTGGTCAAAGATGCCCAGCCCCAGACGA
CGCTATTACAGTATCTCCGCCGAGTCGGCATGACGGGCACCAAGCTAGGA
TGTGGCGAGGGGGGCTGCGGGGCCTGTACAGTAATGATATCGGCGTTCGA
CTACGTCCGGAGGGAGATCAAACACGCTTCGGTCAATGCTTGCCTGGCAC
CTTTGGTGAGTCACTCAGGAAAAATGATCGATCGAGTTGGACCGACCGAC
AGTCCGAGGAACCATCTCGTCTTCTACGTCAACGGCGCGAAGCACGTGGT
CAAAGATGCCCAGCCCCAGACGACGCTATTACAGTATCTCCGCCGAGTCG
GCATGACGGGCACCAAGCTAGGATGTGGCGAGGGGGGCTGCGGGGCCTGT
ACAGTAATGATATCGGCGTTCGACTACGTCCGGAGGGAGATCAAACACGC
TTCGGTCAATGCTTGCCTGGCACCTTTGGTGAGTCACTCAGGAAAA
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