mRNA_H-elongata_contig107745.636.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig107745.636.1
Unique NamemRNA_H-elongata_contig107745.636.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig107745.636.1 vs. uniprot
Match: D7FTE3_ECTSI (Methylthioribose-1-phosphate isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTE3_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 1.240e-21
Identity = 46/52 (88.46%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:    4 QVVFSDPYMTSEMNRWTSPELDDAAASLRTDVTLRLNASRLKQKFMTSCEVL 159
            QVVFSDPYM S+MNRWTSPELD+AAA+LRTDV LRLNASRLKQKFMTSCEV+
Sbjct:  533 QVVFSDPYMESDMNRWTSPELDEAAAALRTDVPLRLNASRLKQKFMTSCEVI 584
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BLAST of mRNA_H-elongata_contig107745.636.1 vs. uniprot
Match: A0A6H5JH20_9PHAE (S-methyl-5-thioribose kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH20_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 4.160e-21
Identity = 46/62 (74.19%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    4 QVVFSDPYMTSEMNRWTSPELDDAAASLRTDVTLRLNASRLKQKFMTSCEVLYKKQLLVGRV 189
            +VVFSDPYM S+MNRWTSPELD+AAA+LR DV LRL+ASRLKQKFMTSCE L    L  G V
Sbjct:  115 EVVFSDPYMESDMNRWTSPELDEAAAALRADVPLRLHASRLKQKFMTSCEALIHADLHTGSV 176
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BLAST of mRNA_H-elongata_contig107745.636.1 vs. uniprot
Match: UPI000406FD76 (S-methyl-5-thioribose kinase n=1 Tax=Paludibacterium yongneupense TaxID=400061 RepID=UPI000406FD76)

HSP 1 Score: 61.6 bits (148), Expect = 1.870e-9
Identity = 30/62 (48.39%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:    4 QVVFSDPYMTSEMNRWTSPELDDAAASLRTDVTLRLNASRLKQKFMTSCEVLYKKQLLVGRV 189
            ++VF+DPY     NRW+SP+LDDAAAS+R D  L+L  +RL Q F+T  + L    L  G V
Sbjct:  183 ELVFADPYREQARNRWSSPQLDDAAASIRHDARLKLAVARLGQAFLTRHDALLHGDLHTGSV 244
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BLAST of mRNA_H-elongata_contig107745.636.1 vs. uniprot
Match: UPI00047BAD00 (S-methyl-5-thioribose kinase n=1 Tax=Afifella pfennigii TaxID=209897 RepID=UPI00047BAD00)

HSP 1 Score: 60.8 bits (146), Expect = 3.510e-9
Identity = 29/62 (46.77%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:    4 QVVFSDPYMTSEMNRWTSPELDDAAASLRTDVTLRLNASRLKQKFMTSCEVLYKKQLLVGRV 189
            +++F++PYM +E NRWT+P LD  AA++R D  L++  SRLK KFM S E +    L  G V
Sbjct:  183 ELIFTEPYMVAERNRWTAPYLDPFAAAIREDGDLKVAISRLKVKFMGSAEAMIHGDLHTGSV 244
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BLAST of mRNA_H-elongata_contig107745.636.1 vs. uniprot
Match: A0A545TM91_9PROT (S-methyl-5-thioribose kinase n=1 Tax=Denitrobaculum tricleocarpae TaxID=2591009 RepID=A0A545TM91_9PROT)

HSP 1 Score: 60.5 bits (145), Expect = 4.800e-9
Identity = 28/61 (45.90%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:    7 VVFSDPYMTSEMNRWTSPELDDAAASLRTDVTLRLNASRLKQKFMTSCEVLYKKQLLVGRV 189
            +VF+DPY  +E+NRWTSP+LDD AA  R D  L++    LK+ FM   E L    L  G +
Sbjct:  191 LVFTDPYRVAELNRWTSPQLDDTAARFRNDAELKVAVQSLKEAFMGRAEALIHGDLHSGSI 251
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BLAST of mRNA_H-elongata_contig107745.636.1 vs. uniprot
Match: A0A7S0DDI8_MICPS (S-methyl-5-thioribose kinase n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0DDI8_MICPS)

HSP 1 Score: 60.5 bits (145), Expect = 4.810e-9
Identity = 28/62 (45.16%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:    4 QVVFSDPYMTSEMNRWTSPELDDAAASLRTDVTLRLNASRLKQKFMTSCEVLYKKQLLVGRV 189
            QV+F++PY  +E N+WTSP+LD AAASL+ DV L+   + LK  F T    L    L  G +
Sbjct:  196 QVIFTEPYCDAENNKWTSPQLDAAAASLKNDVALKTKIAALKHSFATDASALLHGDLHTGSI 257
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BLAST of mRNA_H-elongata_contig107745.636.1 vs. uniprot
Match: A0A383VBY4_TETOB (Methylthioribose-1-phosphate isomerase n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VBY4_TETOB)

HSP 1 Score: 60.1 bits (144), Expect = 6.730e-9
Identity = 28/62 (45.16%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:    4 QVVFSDPYMTSEMNRWTSPELDDAAASLRTDVTLRLNASRLKQKFMTSCEVLYKKQLLVGRV 189
            QV+F+DPY  + +NRWT+P+LD+AAA LR D   +   S LK+KF  S + L    L  G +
Sbjct:  568 QVIFADPYAQAAINRWTAPQLDEAAAGLRADTEAKAAISVLKRKFCCSADALIHGDLHTGSI 629
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BLAST of mRNA_H-elongata_contig107745.636.1 vs. uniprot
Match: UPI001F011447 (S-methyl-5-thioribose kinase n=1 Tax=Pleomorphomonas sp. COJ-58 TaxID=2766474 RepID=UPI001F011447)

HSP 1 Score: 59.7 bits (143), Expect = 8.980e-9
Identity = 28/62 (45.16%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:    4 QVVFSDPYMTSEMNRWTSPELDDAAASLRTDVTLRLNASRLKQKFMTSCEVLYKKQLLVGRV 189
            ++VF DP+  S  N WT+P+LDD    +  D  LRL ASR+  KFMTS + L    L  G V
Sbjct:  182 ELVFQDPFFPSPRNHWTTPQLDDIVGQIHADPVLRLAASRIGYKFMTSTQALVHSDLHTGAV 243
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BLAST of mRNA_H-elongata_contig107745.636.1 vs. uniprot
Match: A0A1G5MUW9_AFIMA (S-methyl-5-thioribose kinase n=3 Tax=Afifella TaxID=643217 RepID=A0A1G5MUW9_AFIMA)

HSP 1 Score: 59.3 bits (142), Expect = 1.230e-8
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:    7 VVFSDPYMTSEMNRWTSPELDDAAASLRTDVTLRLNASRLKQKFMTSCEVLYKKQLLVGRV 189
            ++F++PYM +E NRWT+P LD  AA++R D  L++  SRLK KFM   E +    L  G V
Sbjct:  186 LIFTEPYMVAERNRWTAPYLDPLAAAIREDGDLKVAISRLKVKFMCDAEAMLHGDLHTGSV 246
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BLAST of mRNA_H-elongata_contig107745.636.1 vs. uniprot
Match: A0A7S2ESC2_TRICV (S-methyl-5-thioribose kinase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ESC2_TRICV)

HSP 1 Score: 59.3 bits (142), Expect = 1.230e-8
Identity = 28/62 (45.16%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:    4 QVVFSDPYMTSEMNRWTSPELDDAAASLRTDVTLRLNASRLKQKFMTSCEVLYKKQLLVGRV 189
            QVVF++PY+ S  NRWTSP+LD    ++ +D  L+L  ++LK KF+T  E L    L  G V
Sbjct:  215 QVVFTEPYIKSANNRWTSPQLDGYKKNIESDTELKLAVAKLKSKFVTQTEALLHADLHTGSV 276
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107745.636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTE3_ECTSI1.240e-2188.46Methylthioribose-1-phosphate isomerase n=1 Tax=Ect... [more]
A0A6H5JH20_9PHAE4.160e-2174.19S-methyl-5-thioribose kinase n=1 Tax=Ectocarpus sp... [more]
UPI000406FD761.870e-948.39S-methyl-5-thioribose kinase n=1 Tax=Paludibacteri... [more]
UPI00047BAD003.510e-946.77S-methyl-5-thioribose kinase n=1 Tax=Afifella pfen... [more]
A0A545TM91_9PROT4.800e-945.90S-methyl-5-thioribose kinase n=1 Tax=Denitrobaculu... [more]
A0A7S0DDI8_MICPS4.810e-945.16S-methyl-5-thioribose kinase n=1 Tax=Micromonas pu... [more]
A0A383VBY4_TETOB6.730e-945.16Methylthioribose-1-phosphate isomerase n=1 Tax=Tet... [more]
UPI001F0114478.980e-945.16S-methyl-5-thioribose kinase n=1 Tax=Pleomorphomon... [more]
A0A1G5MUW9_AFIMA1.230e-845.90S-methyl-5-thioribose kinase n=3 Tax=Afifella TaxI... [more]
A0A7S2ESC2_TRICV1.230e-845.16S-methyl-5-thioribose kinase n=1 Tax=Trieres chine... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig107745contigH-elongata_contig107745:1685..1891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.1
Seed ortholog evalue3.5e-18
Seed eggNOG ortholog2880.D7FTE3
Preferred nameMRI1
KEGG rclassRC00002,RC00078,RC01151
KEGG koko:K00899,ko:K03239,ko:K08963,ko:K20047
KEGG ReactionR04143,R04420
KEGG Pathwayko00270,ko01100,ko03013,map00270,map01100,map03013
KEGG ModuleM00034
GOsGO:0000096,GO:0000097,GO:0000166,GO:0000302,GO:0001650,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0003824,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005851,GO:0005911,GO:0006082,GO:0006412,GO:0006413,GO:0006518,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0006950,GO:0006979,GO:0008135,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009059,GO:0009066,GO:0009067,GO:0009086,GO:0009506,GO:0009719,GO:0009723,GO:0009725,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010039,GO:0010467,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0017076,GO:0017144,GO:0019001,GO:0019509,GO:0019538,GO:0019752,GO:0030054,GO:0031974,GO:0031981,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032870,GO:0032991,GO:0033554,GO:0034599,GO:0034614,GO:0034641,GO:0034645,GO:0035639,GO:0035690,GO:0036094,GO:0042221,GO:0042493,GO:0042802,GO:0043043,GO:0043094,GO:0043102,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0046394,GO:0046523,GO:0050896,GO:0051716,GO:0055044,GO:0070013,GO:0070887,GO:0071241,GO:0071248,GO:0071265,GO:0071267,GO:0071281,GO:0071310,GO:0071369,GO:0071495,GO:0071704,GO:0071731,GO:0071732,GO:0097159,GO:0097366,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902170
EggNOG free text desc.S-methyl-5-thioribose-1-phosphate isomerase activity
EggNOG OGsCOG0182@1,KOG1468@2759
EC2.7.1.100,5.3.1.23
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03012,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929606.8599477-CDS-H-elongata_contig107745:1684..18911622929606.8599477-CDS-H-elongata_contig107745:1684..1891Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107745 1685..1891 +
1691679089.1440082-CDS-H-elongata_contig107745:1684..18911691679089.1440082-CDS-H-elongata_contig107745:1684..1891Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107745 1685..1891 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig107745.636.1prot_H-elongata_contig107745.636.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig107745 1685..1891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig107745.636.1

>prot_H-elongata_contig107745.636.1 ID=prot_H-elongata_contig107745.636.1|Name=mRNA_H-elongata_contig107745.636.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
MQVVFSDPYMTSEMNRWTSPELDDAAASLRTDVTLRLNASRLKQKFMTSC
EVLYKKQLLVGRVRECNC*
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mRNA from alignment at H-elongata_contig107745:1685..1891+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig107745.636.1 ID=mRNA_H-elongata_contig107745.636.1|Name=mRNA_H-elongata_contig107745.636.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig107745:1685..1891+ (Himanthalia elongata Himel1 dioecious)
ATGCAGGTTGTTTTTTCTGACCCTTACATGACGAGCGAAATGAACCGCTG
GACGTCGCCCGAGCTGGACGACGCCGCCGCTTCTCTCCGGACGGATGTGA
CTCTAAGGCTCAACGCATCAAGATTGAAGCAGAAGTTCATGACCAGCTGC
GAGGTATTGTACAAGAAGCAGTTGTTGGTCGGACGCGTACGTGAATGTAA
TTGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig107745:1685..1891+

>mRNA_H-elongata_contig107745.636.1 ID=mRNA_H-elongata_contig107745.636.1|Name=mRNA_H-elongata_contig107745.636.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig107745:1685..1891+ (Himanthalia elongata Himel1 dioecious)
ATGCAGGTTGTTTTTTCTGACCCTTACATGACGAGCGAAATGAACCGCTG
GACGTCGCCCGAGCTGGACGACGCCGCCGCTTCTCTCCGGACGGATGTGA
CTCTAAGGCTCAACGCATCAAGATTGAAGCAGAAGTTCATGACCAGCTGC
GAGGTATTGTACAAGAAGCAGTTGTTGGTCGGACGCGTACGTGAATGTAA
TTGCTGAATGCAGGTTGTTTTTTCTGACCCTTACATGACGAGCGAAATGA
ACCGCTGGACGTCGCCCGAGCTGGACGACGCCGCCGCTTCTCTCCGGACG
GATGTGACTCTAAGGCTCAACGCATCAAGATTGAAGCAGAAGTTCATGAC
CAGCTGCGAGGTATTGTACAAGAAGCAGTTGTTGGTCGGACGCGTACGTG
AATGTAATTGCTGA
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